Sed0008124 (gene) Chayote v1

Overview


Name	Sed0008124
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Auxin-responsive protein
Location	LG07: 3470426 .. 3472038 (+)
RNA-Seq Expression	Sed0008124
Synteny	Sed0008124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAAACACAAGCTTTCTACATTATTATTACTTAAATTCCTTCAAAATCTTCAAACACTTTGATTTCCAAACCCTAATAGAAATGGAAAAACTGGGAGCTTCTAATGACCAAGATCTCAACCTCCAAGCCACCGAGCTCTGCCTCGGCCTCCCCGGCTTCGACCGCCGCGGCGCGTCGAAGCCTAACAAGAGACCCTTTTCAGAGGTTGATAAGGAAAGTGAGAGCAGTGTCTCTGATGCCGGGACTAGCCTCGATCATAGCTCCCAACCTCCTCCCCTCAAGTAAGTATAATAGATATATAATTCTCGAATTTGTTTTTTCTAGAGACTTTAAATTCTTAATAGCATACATGAATTATTTAATTTTTGATTGTTTTTTAGATATATCTGCGTTTTATATGATATAATATCAAAATTTAGTGCGAAGTTTTAATCTAAATTAAGATCCATCGTAAGAATGATAAACTTTTTTTAAAAACTACATCTCACAATTTGTTTTAATAAAATTATAAAAGAATCGATTACTTTCTTTTATAATCCATTAGTTTTGAAATGGAATTTTCTAAGACTTTAAATTGTGTCTTTTATAGAGCACAAGTGGTTGGATGGCCCCCGGTTCGATCATACCGAAAGAATTGCTTAGCGGGAAAGAAAAGCGAGACGGAAAGTTGCATCGGGGGGTTTGTGAAAGTAAGTATGGATGGAGCTCCGTACTTGAGGAAGATCGATCTAACCGTTTACAAAAGCTATGCAGAGCTTGTAAAGGCCTTGGAAAACATGTTCAAATTTAATCTTGGTAAGAGATCCTTAACAAAAACAAAAAAAACATAAAATATAATATCTCTATCGGCTTAAGCTTTTGAGTTAGTCTAATTTATCGTTCAATCTCAGGTGGTTATTCCGAGAAGGAAGGTTTCAATGGATCTGATTATGCTCAAACCTACGAAGACAAAGATGGCGACTGGATGCTTGTAGGCGATGTTCCATGGGAGTAAGTTCTTAAACTTTGATATTTTCAATTTCTTCTATTAAAAATGAAGCAAATTTAAGAACAATTCTAATGTGAAATTTAAAATTTGAAATGTGCAGAATGTTCATCCCTTCTTGCAAAAGGCTGAGGATCATGAAAGGATCAGAAGCAAGAGGGTTGGGATGTTTATAAAACTTCCAATTCAAGCAACTTTCTGACAGCTAACAAGAGAAGAAAAAAAAGAGAGATATTATTGTTTTTAGAACTTTATTGTAAAAGAATTTTAGATCCAACAGTGTAAAGGACTATCCAATTATCTCCGAATACAATTGATACTTTTTTTCGTCTAATACTTGAGGTACCACTGACCGACCCATCTAAAATTTTATTTTGTATTTTGGGGATTTTCTTTTAAATAGATTACTTTGTATGTGCTCTAATCTATACATTTAGCCATTAGATGAGTGTATAAGAGTCATGTATCTATGCTCGAATTCTATAACTCCTTCTCGATCAATATTATTATTGTTGTTGTTGTTATTATTTAATAATATTATTAATATTCATGTTATGTTACATGAATCTAAGGGTTTATAAATTAGAAGAGCGTTAAAGGTTAAATATTTTTAACTAGCCAACAAC

mRNA sequence

CCAAAAACACAAGCTTTCTACATTATTATTACTTAAATTCCTTCAAAATCTTCAAACACTTTGATTTCCAAACCCTAATAGAAATGGAAAAACTGGGAGCTTCTAATGACCAAGATCTCAACCTCCAAGCCACCGAGCTCTGCCTCGGCCTCCCCGGCTTCGACCGCCGCGGCGCGTCGAAGCCTAACAAGAGACCCTTTTCAGAGGTTGATAAGGAAAGTGAGAGCAGTGTCTCTGATGCCGGGACTAGCCTCGATCATAGCTCCCAACCTCCTCCCCTCAAAGCACAAGTGGTTGGATGGCCCCCGGTTCGATCATACCGAAAGAATTGCTTAGCGGGAAAGAAAAGCGAGACGGAAAGTTGCATCGGGGGGTTTGTGAAAGTAAGTATGGATGGAGCTCCGTACTTGAGGAAGATCGATCTAACCGTTTACAAAAGCTATGCAGAGCTTGTAAAGGCCTTGGAAAACATGTTCAAATTTAATCTTGGTGGTTATTCCGAGAAGGAAGGTTTCAATGGATCTGATTATGCTCAAACCTACGAAGACAAAGATGGCGACTGGATGCTTGTAGGCGATGTTCCATGGGAAATGTTCATCCCTTCTTGCAAAAGGCTGAGGATCATGAAAGGATCAGAAGCAAGAGGGTTGGGATGTTTATAAAACTTCCAATTCAAGCAACTTTCTGACAGCTAACAAGAGAAGAAAAAAAAGAGAGATATTATTGTTTTTAGAACTTTATTGTAAAAGAATTTTAGATCCAACAGTGTAAAGGACTATCCAATTATCTCCGAATACAATTGATACTTTTTTTCGTCTAATACTTGAGGTACCACTGACCGACCCATCTAAAATTTTATTTTGTATTTTGGGGATTTTCTTTTAAATAGATTACTTTGTATGTGCTCTAATCTATACATTTAGCCATTAGATGAGTGTATAAGAGTCATGTATCTATGCTCGAATTCTATAACTCCTTCTCGATCAATATTATTATTGTTGTTGTTGTTATTATTTAATAATATTATTAATATTCATGTTATGTTACATGAATCTAAGGGTTTATAAATTAGAAGAGCGTTAAAGGTTAAATATTTTTAACTAGCCAACAAC

Coding sequence (CDS)

ATGGAAAAACTGGGAGCTTCTAATGACCAAGATCTCAACCTCCAAGCCACCGAGCTCTGCCTCGGCCTCCCCGGCTTCGACCGCCGCGGCGCGTCGAAGCCTAACAAGAGACCCTTTTCAGAGGTTGATAAGGAAAGTGAGAGCAGTGTCTCTGATGCCGGGACTAGCCTCGATCATAGCTCCCAACCTCCTCCCCTCAAAGCACAAGTGGTTGGATGGCCCCCGGTTCGATCATACCGAAAGAATTGCTTAGCGGGAAAGAAAAGCGAGACGGAAAGTTGCATCGGGGGGTTTGTGAAAGTAAGTATGGATGGAGCTCCGTACTTGAGGAAGATCGATCTAACCGTTTACAAAAGCTATGCAGAGCTTGTAAAGGCCTTGGAAAACATGTTCAAATTTAATCTTGGTGGTTATTCCGAGAAGGAAGGTTTCAATGGATCTGATTATGCTCAAACCTACGAAGACAAAGATGGCGACTGGATGCTTGTAGGCGATGTTCCATGGGAAATGTTCATCCCTTCTTGCAAAAGGCTGAGGATCATGAAAGGATCAGAAGCAAGAGGGTTGGGATGTTTATAA

Protein sequence

MEKLGASNDQDLNLQATELCLGLPGFDRRGASKPNKRPFSEVDKESESSVSDAGTSLDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRIMKGSEARGLGCL

Homology

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BLAST of Sed0008124 vs. NCBI nr
Match: XP_004146959.1 (auxin-induced protein 22D [Cucumis sativus] >KGN44764.1 hypothetical protein Csa_016823 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 3.5e-84
Identity = 161/196 (82.14%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 1   MEKLGASNDQ-DLNLQATELCLGLPGFD---RRGASKPNKRPFSEVDKESESSVSDAGTS 60
           M KL AS+D  DLN QATEL LGLPG D   RR  SK NKRPFSE+DKE+ SSVSD G  
Sbjct: 1   MAKLAASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNH 60

Query: 61  LDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTV 120
           +D +SQPPP KAQVVGWPPVRSYRKNCLA KKSE ES  GG+VKVSMDGAPYLRKIDLTV
Sbjct: 61  IDQTSQPPPSKAQVVGWPPVRSYRKNCLAVKKSEIESSSGGYVKVSMDGAPYLRKIDLTV 120

Query: 121 YKSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCK 180
           YKSY +LVKALENMFKFNLGGYSE+EGFNGSDY  TYEDKDGDWMLVGDVPWEMFI SCK
Sbjct: 121 YKSYTDLVKALENMFKFNLGGYSEREGFNGSDYVPTYEDKDGDWMLVGDVPWEMFISSCK 180

Query: 181 RLRIMKGSEARGLGCL 193
           RLRIMKGSEARGLGCL
Sbjct: 181 RLRIMKGSEARGLGCL 196

[Close]

BLAST of Sed0008124 vs. NCBI nr
Match: XP_023004261.1 (auxin-induced protein 22D-like [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 3.5e-84
Identity = 157/195 (80.51%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 1   MEKLGASNDQDLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTSL 60
           M KL  S+D+DLNLQATEL LGLPG    DRR  S+PNKRPFSE+DKE++S VSDA    
Sbjct: 1   MAKLAVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGS 60

Query: 61  DHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVY 120
           D SSQPPP K Q+VGWPP+RSYRKNCLAGKKSE ESC GG+VKVSMDGAPYLRKIDLT+Y
Sbjct: 61  DQSSQPPPSKGQIVGWPPIRSYRKNCLAGKKSEAESCNGGYVKVSMDGAPYLRKIDLTIY 120

Query: 121 KSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKR 180
           KSY ELVKALENMF FNLGGYSEKEGFNGSDY  TYEDKD DWMLVGDVPWEMFI SCKR
Sbjct: 121 KSYVELVKALENMFNFNLGGYSEKEGFNGSDYVPTYEDKDSDWMLVGDVPWEMFICSCKR 180

Query: 181 LRIMKGSEARGLGCL 193
           LRIMKGSEA+GLG L
Sbjct: 181 LRIMKGSEAKGLGRL 195

[Close]

BLAST of Sed0008124 vs. NCBI nr
Match: XP_008451269.1 (PREDICTED: auxin-induced protein 22D-like [Cucumis melo] >KAA0059697.1 auxin-induced protein 22D-like [Cucumis melo var. makuwa] >TYK26134.1 auxin-induced protein 22D-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 5.9e-84
Identity = 164/197 (83.25%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MEKLGASNDQ-DLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTS 60
           M KL AS+D  DLN QATEL LGLPG    DRR  SK NKRPFSE+DKES SS+S+ G  
Sbjct: 1   MAKLAASSDHPDLNFQATELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNC 60

Query: 61  LDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTV 120
           LD +SQPPP KAQVVGWPPVRSYRKN LAGKKSETES  GG+VKVSMDGAPYLRKIDLT+
Sbjct: 61  LDQTSQPPPSKAQVVGWPPVRSYRKNYLAGKKSETESSSGGYVKVSMDGAPYLRKIDLTI 120

Query: 121 YKSYAELVKALENMFKFNLGGYSEKEGF-NGSDYAQTYEDKDGDWMLVGDVPWEMFIPSC 180
           YKSY ELVKALENMFKFNLGGYSEKEGF NGSDYA TYEDKDGDWMLVGDVPWEMFI SC
Sbjct: 121 YKSYTELVKALENMFKFNLGGYSEKEGFNNGSDYAPTYEDKDGDWMLVGDVPWEMFISSC 180

Query: 181 KRLRIMKGSEARGLGCL 193
           KRLRIMKGSEARGLGCL
Sbjct: 181 KRLRIMKGSEARGLGCL 197

[Close]

BLAST of Sed0008124 vs. NCBI nr
Match: XP_023513502.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.5 bits (815), Expect = 3.8e-83
Identity = 155/192 (80.73%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 4   LGASNDQDLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTSLDHS 63
           +  S+D+DLNLQATEL LGLPG    DRR  S+PNKRPFSE+DKE++S VSDA    D S
Sbjct: 1   MAVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQS 60

Query: 64  SQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSY 123
           SQPPP KAQ+VGWPPVRSYRKNCLAGKKSE ESC GG+VKVSMDGAPYLRKIDLT+YKSY
Sbjct: 61  SQPPPSKAQIVGWPPVRSYRKNCLAGKKSEAESCNGGYVKVSMDGAPYLRKIDLTIYKSY 120

Query: 124 AELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRI 183
            ELVKALENMF FNLGGYSEKEGFNGSDY  TYEDKD DWMLVGDVPWEMFI SCKRLRI
Sbjct: 121 VELVKALENMFNFNLGGYSEKEGFNGSDYVPTYEDKDSDWMLVGDVPWEMFICSCKRLRI 180

Query: 184 MKGSEARGLGCL 193
           MKGSEA+G+G L
Sbjct: 181 MKGSEAKGVGRL 192

[Close]

BLAST of Sed0008124 vs. NCBI nr
Match: XP_022960238.1 (auxin-induced protein 22D-like [Cucurbita moschata])

HSP 1 Score: 314.3 bits (804), Expect = 7.2e-82
Identity = 153/192 (79.69%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 4   LGASNDQDLNLQATELCLGLPGFDR---RGASKPNKRPFSEVDKESESSVSDAGTSLDHS 63
           +  S+D+DLNLQATEL LGLPG D+   R  S+PNKRPFSE+DKE++S VSD     D S
Sbjct: 1   MAVSDDRDLNLQATELRLGLPGSDQPDHRCGSQPNKRPFSEIDKENDSRVSDVENGSDPS 60

Query: 64  SQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSY 123
           SQPPP KAQ+VGWPPVRSYRKNCL GKKSE ESC GG+VKVSMDGAPYLRKIDLT+YKSY
Sbjct: 61  SQPPPSKAQIVGWPPVRSYRKNCLVGKKSEAESCNGGYVKVSMDGAPYLRKIDLTIYKSY 120

Query: 124 AELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRI 183
            ELVKALENMF FNLGGYSEKEGFNGSDY  TYEDKD DWMLVGDVPWEMFI SCKRLRI
Sbjct: 121 VELVKALENMFNFNLGGYSEKEGFNGSDYVPTYEDKDSDWMLVGDVPWEMFICSCKRLRI 180

Query: 184 MKGSEARGLGCL 193
           MKGSEA+GLG L
Sbjct: 181 MKGSEAKGLGRL 192

[Close]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-62
Identity = 122/194 (62.89%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 1   MEKLGASNDQDLNLQATELCLGLPGFD---RRGASKPNKRPFSEVDKESESSVSDAGTSL 60
           ME    S +++LNL+ATEL LGLPG D   +R  ++ NKR  S  +   E S+S+     
Sbjct: 1   MENSLGSYEKELNLKATELRLGLPGSDEPEKRATARSNKR--SSPEASDEESISNGSDVT 60

Query: 61  DHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVY 120
              +  PP KAQVVGWPP+RSYRKN +  KK E     G +VKVSM GAPYLRKIDL VY
Sbjct: 61  KEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVY 120

Query: 121 KSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKR 180
           KSY EL+KALENMFK   G YSE+EG+NGS+YA TYEDKDGDWMLVGDVPW MF+ SCKR
Sbjct: 121 KSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKR 180

Query: 181 LRIMKGSEARGLGC 192
           LRIMKGSEA+GLGC
Sbjct: 181 LRIMKGSEAKGLGC 192

[Close]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-59
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MEKLGASNDQDLNLQATELCLGLPGFDRR-GASKPNKRPFSE-VDKESESSVSDAGTSLD 60
           MEK+    D+ +NL+ATEL LGLPG +      K NKR   E  +KE ES      T   
Sbjct: 1   MEKVDV-YDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIES------TGKT 60

Query: 61  HSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYK 120
            ++ PP  KAQ+VGWPPVRSYRKN +  KKSE+E   G +VKVSMDGAPYLRKIDLT+YK
Sbjct: 61  ETASPP--KAQIVGWPPVRSYRKNNVQTKKSESEG-QGNYVKVSMDGAPYLRKIDLTMYK 120

Query: 121 SYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRL 180
            Y EL+K+LENMFKF++G Y E+EG+ GSD+  TYEDKDGDWMLVGDVPWEMF+ SCKRL
Sbjct: 121 QYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRL 180

Query: 181 RIMKGSEARGLGC 192
           RIMKGSE +GLGC
Sbjct: 181 RIMKGSEVKGLGC 183

[Close]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 118/201 (58.71%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 7   SNDQDLNLQATELCLGLPGFDRRGASKP---------NKRPFSEVDKES-----ESSVSD 66
           S + +LNL+ATEL LGLPG D     +P         NKR   E+++        S  SD
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62

Query: 67  AGTSLDHSSQP-PPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRK 126
           + T+ DH+     P K QVVGWPP+RS+RKN L  KK E     G ++KVSM GAPYLRK
Sbjct: 63  STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRK 122

Query: 127 IDLTVYKSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMF 186
           IDL VYKSY EL+KAL+N+FK   G YSE+EG+NGS+YA TYEDKDGDWMLVGDVPW MF
Sbjct: 123 IDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMF 182

Query: 187 IPSCKRLRIMKGSEARGLGCL 193
           + SCKRLRI+KGSEA+GLGCL
Sbjct: 183 VSSCKRLRIIKGSEAKGLGCL 203

[Close]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-57
Identity = 118/193 (61.14%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 9   DQDLNLQATELCLGLPGFDRRGASKP--------NKRPFS-EVDKESESSVSDAGTSLDH 68
           D+ +NL+ TEL LGLPG D    +K         NKR  S + +KE ESS     TS   
Sbjct: 2   DEFVNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS--- 61

Query: 69  SSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETE-SCIGGFVKVSMDGAPYLRKIDLTVYK 128
               PP KAQ+VGWPPVRSYRKN +  KK+E+E    G +VKVSMDGAPYLRKIDL+ YK
Sbjct: 62  ----PPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYK 121

Query: 129 SYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRL 188
            Y+EL+KALE MFKF++G Y E++G+ GSD+  TYEDKDGDWML+GDVPWEMFI +CKRL
Sbjct: 122 GYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRL 181

Query: 189 RIMKGSEARGLGC 192
           RIMKGSEA+GLGC
Sbjct: 182 RIMKGSEAKGLGC 187

[Close]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 113/194 (58.25%), Postives = 137/194 (70.62%), Query Frame = 0


Query: 9   DQDLNLQATELCLGLPGFDRR--------GASKPNKRPFSEVDKESESSVSDAGTSLDH- 68
           + DLNL+ATEL LGLPG + +           + NKR   E  ++S  S+S A     H 
Sbjct: 8   ESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDS-VSISKASHHQQHV 67

Query: 69  -SSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYK 128
            +   PP KA++VGWPP+RSYRKN +   + +     G FVKVSMDGAPYLRK+DL VY 
Sbjct: 68  ETVSAPPPKAKIVGWPPIRSYRKNSVQEGEGD-----GIFVKVSMDGAPYLRKVDLKVYG 127

Query: 129 SYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRL 188
            Y EL+KALE MFK  +G YSE+EG+ GS+YA TYEDKDGDWMLVGDVPW+MF+ SCKRL
Sbjct: 128 GYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRL 187

Query: 189 RIMKGSEARGLGCL 193
           RIMKGSEARGLGC+
Sbjct: 188 RIMKGSEARGLGCV 195

[Close]

BLAST of Sed0008124 vs. ExPASy TrEMBL
Match: A0A6J1KRM5 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111497647 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 157/195 (80.51%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 1   MEKLGASNDQDLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTSL 60
           M KL  S+D+DLNLQATEL LGLPG    DRR  S+PNKRPFSE+DKE++S VSDA    
Sbjct: 1   MAKLAVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGS 60

Query: 61  DHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVY 120
           D SSQPPP K Q+VGWPP+RSYRKNCLAGKKSE ESC GG+VKVSMDGAPYLRKIDLT+Y
Sbjct: 61  DQSSQPPPSKGQIVGWPPIRSYRKNCLAGKKSEAESCNGGYVKVSMDGAPYLRKIDLTIY 120

Query: 121 KSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKR 180
           KSY ELVKALENMF FNLGGYSEKEGFNGSDY  TYEDKD DWMLVGDVPWEMFI SCKR
Sbjct: 121 KSYVELVKALENMFNFNLGGYSEKEGFNGSDYVPTYEDKDSDWMLVGDVPWEMFICSCKR 180

Query: 181 LRIMKGSEARGLGCL 193
           LRIMKGSEA+GLG L
Sbjct: 181 LRIMKGSEAKGLGRL 195

[Close]

BLAST of Sed0008124 vs. ExPASy TrEMBL
Match: A0A0A0K770 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G378530 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 161/196 (82.14%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 1   MEKLGASNDQ-DLNLQATELCLGLPGFD---RRGASKPNKRPFSEVDKESESSVSDAGTS 60
           M KL AS+D  DLN QATEL LGLPG D   RR  SK NKRPFSE+DKE+ SSVSD G  
Sbjct: 1   MAKLAASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNH 60

Query: 61  LDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTV 120
           +D +SQPPP KAQVVGWPPVRSYRKNCLA KKSE ES  GG+VKVSMDGAPYLRKIDLTV
Sbjct: 61  IDQTSQPPPSKAQVVGWPPVRSYRKNCLAVKKSEIESSSGGYVKVSMDGAPYLRKIDLTV 120

Query: 121 YKSYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCK 180
           YKSY +LVKALENMFKFNLGGYSE+EGFNGSDY  TYEDKDGDWMLVGDVPWEMFI SCK
Sbjct: 121 YKSYTDLVKALENMFKFNLGGYSEREGFNGSDYVPTYEDKDGDWMLVGDVPWEMFISSCK 180

Query: 181 RLRIMKGSEARGLGCL 193
           RLRIMKGSEARGLGCL
Sbjct: 181 RLRIMKGSEARGLGCL 196

[Close]

BLAST of Sed0008124 vs. ExPASy TrEMBL
Match: A0A5A7UYH3 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00540 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.9e-84
Identity = 164/197 (83.25%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MEKLGASNDQ-DLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTS 60
           M KL AS+D  DLN QATEL LGLPG    DRR  SK NKRPFSE+DKES SS+S+ G  
Sbjct: 1   MAKLAASSDHPDLNFQATELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNC 60

Query: 61  LDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTV 120
           LD +SQPPP KAQVVGWPPVRSYRKN LAGKKSETES  GG+VKVSMDGAPYLRKIDLT+
Sbjct: 61  LDQTSQPPPSKAQVVGWPPVRSYRKNYLAGKKSETESSSGGYVKVSMDGAPYLRKIDLTI 120

Query: 121 YKSYAELVKALENMFKFNLGGYSEKEGF-NGSDYAQTYEDKDGDWMLVGDVPWEMFIPSC 180
           YKSY ELVKALENMFKFNLGGYSEKEGF NGSDYA TYEDKDGDWMLVGDVPWEMFI SC
Sbjct: 121 YKSYTELVKALENMFKFNLGGYSEKEGFNNGSDYAPTYEDKDGDWMLVGDVPWEMFISSC 180

Query: 181 KRLRIMKGSEARGLGCL 193
           KRLRIMKGSEARGLGCL
Sbjct: 181 KRLRIMKGSEARGLGCL 197

[Close]

BLAST of Sed0008124 vs. ExPASy TrEMBL
Match: A0A1S3BS59 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492618 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.9e-84
Identity = 164/197 (83.25%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MEKLGASNDQ-DLNLQATELCLGLPGF---DRRGASKPNKRPFSEVDKESESSVSDAGTS 60
           M KL AS+D  DLN QATEL LGLPG    DRR  SK NKRPFSE+DKES SS+S+ G  
Sbjct: 1   MAKLAASSDHPDLNFQATELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNC 60

Query: 61  LDHSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTV 120
           LD +SQPPP KAQVVGWPPVRSYRKN LAGKKSETES  GG+VKVSMDGAPYLRKIDLT+
Sbjct: 61  LDQTSQPPPSKAQVVGWPPVRSYRKNYLAGKKSETESSSGGYVKVSMDGAPYLRKIDLTI 120

Query: 121 YKSYAELVKALENMFKFNLGGYSEKEGF-NGSDYAQTYEDKDGDWMLVGDVPWEMFIPSC 180
           YKSY ELVKALENMFKFNLGGYSEKEGF NGSDYA TYEDKDGDWMLVGDVPWEMFI SC
Sbjct: 121 YKSYTELVKALENMFKFNLGGYSEKEGFNNGSDYAPTYEDKDGDWMLVGDVPWEMFISSC 180

Query: 181 KRLRIMKGSEARGLGCL 193
           KRLRIMKGSEARGLGCL
Sbjct: 181 KRLRIMKGSEARGLGCL 197

[Close]

BLAST of Sed0008124 vs. ExPASy TrEMBL
Match: A0A6J1H897 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461039 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82
Identity = 153/192 (79.69%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 4   LGASNDQDLNLQATELCLGLPGFDR---RGASKPNKRPFSEVDKESESSVSDAGTSLDHS 63
           +  S+D+DLNLQATEL LGLPG D+   R  S+PNKRPFSE+DKE++S VSD     D S
Sbjct: 1   MAVSDDRDLNLQATELRLGLPGSDQPDHRCGSQPNKRPFSEIDKENDSRVSDVENGSDPS 60

Query: 64  SQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSY 123
           SQPPP KAQ+VGWPPVRSYRKNCL GKKSE ESC GG+VKVSMDGAPYLRKIDLT+YKSY
Sbjct: 61  SQPPPSKAQIVGWPPVRSYRKNCLVGKKSEAESCNGGYVKVSMDGAPYLRKIDLTIYKSY 120

Query: 124 AELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRI 183
            ELVKALENMF FNLGGYSEKEGFNGSDY  TYEDKD DWMLVGDVPWEMFI SCKRLRI
Sbjct: 121 VELVKALENMFNFNLGGYSEKEGFNGSDYVPTYEDKDSDWMLVGDVPWEMFICSCKRLRI 180

Query: 184 MKGSEARGLGCL 193
           MKGSEA+GLG L
Sbjct: 181 MKGSEAKGLGRL 192

[Close]

BLAST of Sed0008124 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-60
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MEKLGASNDQDLNLQATELCLGLPGFDRR-GASKPNKRPFSE-VDKESESSVSDAGTSLD 60
           MEK+    D+ +NL+ATEL LGLPG +      K NKR   E  +KE ES      T   
Sbjct: 1   MEKVDV-YDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIES------TGKT 60

Query: 61  HSSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYK 120
            ++ PP  KAQ+VGWPPVRSYRKN +  KKSE+E   G +VKVSMDGAPYLRKIDLT+YK
Sbjct: 61  ETASPP--KAQIVGWPPVRSYRKNNVQTKKSESEG-QGNYVKVSMDGAPYLRKIDLTMYK 120

Query: 121 SYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRL 180
            Y EL+K+LENMFKF++G Y E+EG+ GSD+  TYEDKDGDWMLVGDVPWEMF+ SCKRL
Sbjct: 121 QYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRL 180

Query: 181 RIMKGSEARGLGC 192
           RIMKGSE +GLGC
Sbjct: 181 RIMKGSEVKGLGC 183

[Close]

BLAST of Sed0008124 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-58
Identity = 118/193 (61.14%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 9   DQDLNLQATELCLGLPGFDRRGASKP--------NKRPFS-EVDKESESSVSDAGTSLDH 68
           D+ +NL+ TEL LGLPG D    +K         NKR  S + +KE ESS     TS   
Sbjct: 2   DEFVNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS--- 61

Query: 69  SSQPPPLKAQVVGWPPVRSYRKNCLAGKKSETE-SCIGGFVKVSMDGAPYLRKIDLTVYK 128
               PP KAQ+VGWPPVRSYRKN +  KK+E+E    G +VKVSMDGAPYLRKIDL+ YK
Sbjct: 62  ----PPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYK 121

Query: 129 SYAELVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRL 188
            Y+EL+KALE MFKF++G Y E++G+ GSD+  TYEDKDGDWML+GDVPWEMFI +CKRL
Sbjct: 122 GYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRL 181

Query: 189 RIMKGSEARGLGC 192
           RIMKGSEA+GLGC
Sbjct: 182 RIMKGSEAKGLGC 187

[Close]

BLAST of Sed0008124 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 103/187 (55.08%), Postives = 118/187 (63.10%), Query Frame = 0


Query: 11  DLNLQATELCLGLPGFDRR--------GASKPNKRPFSEVDKESESSVSDAGTSLDHSSQ 70
           +LNL+ TELCLGLPG   +             NKR F E   E ES+             
Sbjct: 8   ELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDEEEST------------- 67

Query: 71  PPPLKAQVVGWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSYAE 130
            PP K Q+VGWPPVRS RKN          +    +VKVSMDGAPYLRKIDL  YK+Y E
Sbjct: 68  -PPTKTQIVGWPPVRSSRKN----------NNSVSYVKVSMDGAPYLRKIDLKTYKNYPE 127

Query: 131 LVKALENMFKFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRIMK 190
           L+KALENMFK  +G Y E+EG+ GS +  TYEDKDGDWMLVGDVPW+MF  SCKRLRIMK
Sbjct: 128 LLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMK 170

[Close]

BLAST of Sed0008124 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 189.5 bits (480), Expect = 2.5e-48
Identity = 101/175 (57.71%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 12  LNLQATELCLGLPGFDRRGASKPNKRPFSEVDKESESSVSDAGTSLDHSSQPPPLKAQVV 71
           LNL+ TEL LGLP     GA +  +   S V   ++   +D+       S PPP K Q+V
Sbjct: 7   LNLKDTELRLGLP-----GAQEEQQLELSCVRSNNKRKNNDS----TEESAPPPAKTQIV 66

Query: 72  GWPPVRSYRKNCLAGKKSETESCIGGFVKVSMDGAPYLRKIDLTVYKSYAELVKALENMF 131
           GWPPVRS RKN      ++  S    +VKVSMDGAPYLRKIDL +YK+Y EL+KALENMF
Sbjct: 67  GWPPVRSNRKN----NNNKNVS----YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMF 126

Query: 132 KFNLGGYSEKEGFNGSDYAQTYEDKDGDWMLVGDVPWEMFIPSCKRLRIMKGSEA 187
           KF +G YSE+EG+ GS +  TYEDKDGDWMLVGDVPW+MF  SC++LRIMKGSEA
Sbjct: 127 KFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164

[Close]

BLAST of Sed0008124 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-47
Identity = 112/212 (52.83%), Postives = 129/212 (60.85%), Query Frame = 0


Query: 11  DLNLQATELCLGLPGFDRRGASKPNKRPFSE-VD----------KESESSVSDAGT--SL 70
           +LNL+ TELCLGLPG D       NKR FSE VD           +  S+  D  T  S 
Sbjct: 6   ELNLRETELCLGLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSK 65

Query: 71  DHSSQP-----PPLKAQVVGWPPVRSYRKNCLAG-KKSETESCIGGFVKVSMDGAPYLRK 130
           + S+ P     PP KAQVVGWPPVRSYRKN +   +KS        FVKVSMDGAPYLRK
Sbjct: 66  EKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRK 125

Query: 131 IDLTVYKSYAELVKALENMF-KFNLGGYSEKEGF-------------NGSDYAQTYEDKD 190
           IDL +YKSY EL  AL NMF  F +G +  +EG              N  DY  +YEDKD
Sbjct: 126 IDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKD 185

The following BLAST results are available for this feature:

BLAST of Sed0008124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146959.1	3.5e-84	82.14	auxin-induced protein 22D [Cucumis sativus] >KGN44764.1 hypothetical protein Csa...	[more]
XP_023004261.1	3.5e-84	80.51	auxin-induced protein 22D-like [Cucurbita maxima]	[more]
XP_008451269.1	5.9e-84	83.25	PREDICTED: auxin-induced protein 22D-like [Cucumis melo] >KAA0059697.1 auxin-ind...	[more]
XP_023513502.1	3.8e-83	80.73	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960238.1	7.2e-82	79.69	auxin-induced protein 22D-like [Cucurbita moschata]	[more]

BLAST of Sed0008124 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24542	5.1e-62	62.89	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
P33077	3.1e-59	63.21	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
O24543	1.5e-58	58.71	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]
Q38822	4.9e-57	61.14	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P32294	1.2e-55	58.25	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]

BLAST of Sed0008124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRM5	1.7e-84	80.51	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111497647 PE=3 SV=1	[more]
A0A0A0K770	1.7e-84	82.14	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G378530 PE=3 SV=1	[more]
A0A5A7UYH3	2.9e-84	83.25	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BS59	2.9e-84	83.25	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492618 PE=3 SV=1	[more]
A0A6J1H897	3.5e-82	79.69	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461039 PE=3 SV=1	[more]

BLAST of Sed0008124 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43700.1	2.2e-60	63.21	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	3.5e-58	61.14	AUX/IAA transcriptional regulator family protein	[more]
AT3G23030.1	1.5e-48	55.08	indole-3-acetic acid inducible 2	[more]
AT4G14560.1	2.5e-48	57.71	indole-3-acetic acid inducible	[more]
AT1G04250.1	4.7e-47	52.83	AUX/IAA transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 35..138 e-value: 2.5E-30 score: 106.1
None	No IPR available	GENE3D	3.10.20.90		coord: 91..146 e-value: 2.4E-15 score: 58.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 8..139
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 8..139
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 96..146 score: 13.722666

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008124.1	Sed0008124.1	mRNA
Sed0008124.2	Sed0008124.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding