Sed0008122 (gene) Chayote v1

Overview


Name	Sed0008122
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll A-B binding protein
Location	LG11: 5555896 .. 5563484 (-)
RNA-Seq Expression	Sed0008122
Synteny	Sed0008122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTCGATAGAATAATAGCTCAAGCGGCATCAATACACACTTAATGATTTATGGATCATAAGTTTAAGATTCAGGTGATTAATTATCTAATTTATTATTAATCTATATCTGTAATCGATATTTGTAATCAATTTGCTCATGGCCATTTACCAAACTTATTTTGCGCAGGGATCATATACAAATAACCCAAGTCAAATCAGAATTAAGATATATTCGAGTGGCAAGGGAGCCATTACAAACCTGTCTCACTCTCTAGAAAATAAAAATGTGGATATGGGCATCTGAAATCTATAAATCAAAACCCCCCATAAATTTCTATATAAACATGGTTTGCTCAAGAAATGGATAAGGATTGTTCATGTGAAGAAGCTGCAGATTTTGGAAATGGCTTCTTCCACTGCGCTGATTCTCCCCATCAATGGAGGAAACCGCCTTTCGTCTTCTCCACGCCTCTCTTTCCGCCATACCCATCCTTCTGCAACTTTCTCCAGGTAATTTCATCTTCTTCCTCAAATACCCATTTCGCCAATCGCTCTAATTTGTGGGTTTTGTTTAGTTTCCCCCCTTTTTCAATATCATGGGTTTCTATCATATAATTGTATGGTTTTAGAGACATAGATGAAATTGATTCTTGTAATTTCTTTGTTTGATTGGGGCTGTGGGTCTAAGCTTCGTATGCTGTAGGGTTTGATGGTTTTGGAATAGGGTTCAAGCTAAAGAGTGATTAGAGTTTGAGTTTGATTATTAGATAAGCCATTTAGGTTTTTATCTGTTTTGAGAAATTTGGTGATTTTGTTACGAAAAAATGGAACAAATTAAAGAAAACTTGAGACAGAACATAGTAATTTAACTTGGTTACTAACAGTGTGTTATAGAGATAATTGTTTCATTAAGGAGAGATCGCTGCTTGTTGACCGGGCTCTGACTATGTTATCCTGGGGCAACATAGTTCAAAGGCATCTCAACAACTTTCATGAGTTGACTACCTCGCCTAATGCCTAAGCTTATAGGGGTGATGGATCTTCACTTCTCGTCTCGAAAACATGGTTGGGACAAAAACAATGGTTTTGAGTGATTTAGTTTCTTTAGTATCCGTTAGTGTTTGGGTCAGTTTATACGCACCTCAACTATTCTCATCTTAGAGGACATACCGCTTGATCCTACAACATTTAGAGGAAACTAGTATAAAAGAACTAAATTAGTTATAAACCATTACCTAGCTAGTACTGAAATTTGGTGACTAGAATACAACATTTGGATGTATAGTTTTCATCCTAGGAACTTGAACTCAAAATTTTGGAGGTATATCTAAATAGGGGAAAATGGCACTACATGAGTAATAGATACTCATGTCTGAAACTAAAACTTAGGTTGCTTGTTACGACATTTTTCCTTCAATGTTGATCTACAAGTGATGCTAAAACCTAGGTTGTTGTTATATTCCTATCAGAAAAAAACATTATTTAATATTATTGAGTTACAAATAGGATCAAATAAGAATTCTATTCTAGTCACCACGAAACCTATATAAAATAATAAAAGAACTAAATGAACAATAGAACTGTTGTTAAAACTCATTACCTAGCTTGGTAGTCTCCTATTGTGGCCCTTCTTCCCAGCTCTGTCTTACTGTATTGGTACGTTCTAGGCCTTAGCTAAAGTAAGAATAATTAGAGGGGCATATGTGCAATTAGTTAAGAAGTTTGTTAGGGTTTTACAATTCTAAATAGAGGGGAGGGGTGAGTGAAGAGGCATCCAACATATCGAGTGAATTCTTATTGGCTGAGAGAGTAATCTCTAGAGAATGGCAAGTTCCAAGACATATTAAATCTTGGTTTATCTTTGTAGTTTTTTTATAGTTTGATATCAGTATAAAAGTCGGGTCATATCATATCCCTTATTATTCATTTTGTTTTCTTACTTTTCCCTGTGCTTCTTTGTATATTCCGTCTGTGAAAGGATCCCTTTTGTTTCCTAGCTGGTCCTTCGAGTCCTTTTTTGAATTGATAGCATTGTTCTCACGGTTGTATCTTGGATCAAACGCTATCCATGCTTTAAAGATTATCCTTTTTCCTCCCTCCTTTCTAATTGGAAATGTATTTTGTAAATTTTGGTGCTTTTGTTATAGTCCTATTGAACCGCATTTCATCCTTAATGAAATTGTTTCTTCTCAAAAAAAAAAAAAAAATACAAAGCATAATAAAGAAGGTTCTACAGAAGGCCGAGCTGAATTCATATGTATCGTACACTTACATTGGAGAAAAATTTTAAGGTATCCGATACCAATTTCTTACCATCAATTCACAGAACAATTCATAAACAACAGATAGTATGGAAAATAACGCTCAAAACAGAGATGAACTTTCAATGACCAGCAGATTCATTAACAATGGCATGAAACAAATTACAAACTGAATTAAGGAAATGAACAATAGAACGGTATGAACAACATTACCCGGTGAATTTGAGAACACCGGATCCTCTCCTACAATTCCTATGACTTAGTCCAAAAGAAAAATCTTCCTCCTCGACCTCACTTTACATTATTTATAACCACTAGAGGCTCTCCCCCCACATTCCCTCTAACCACTTGCTAAGGAACTACCCAATGTGCTCCTTCTAGAATATTCCAGATAATTAGGGTTCTTGCGAAAAGACGAGTCACCCTAGCCTTTTCAAGTACAATCCAAATCGGCAAAACTATAAAATGAGGGGCTTTCCTTGAAATTTCTAATAAGTAGACCTATATAAGCAATGAAATGAGTTCTAAAGTGCTATCTCATTTACTTTTGAGTTATATCTAAAAAAATATGCCTATTAATTTTTAACGAAATGTACTGAATTGTAGCATAAATTTTAAACTTATAGATTTTTCGCACTTCAGTGTTTATTCGTTGACCATCAAAAGAGCGTAAATGGTTCGATACAAGTTTCAACACATTGCATGGTGCAAGGTGTATGATACTGTTGATATATGTTTATTTTATTATTTTTATCTTTTTAATTAATTTTTCATTTTAGGATTAGATTAAATATTATTTTCTATCTTTTCCTTGTATGATTAGGTATTATCTTTTATTTTATGTCATCTCTTGTAATCTATTTAAACCCAATGTTGAGTTCATTATAACCCAATGTTGAGTTCATTATTAAATGAAGAATTTGAAAAATTTAAGTTCCATCTTTCAACGGATATTTTAGTCTCAATTTCAATCATGGGAAATGTTAGAACTCAAGTTTTTGAAGCATTTTGATCCTTGGGTTTCCTTTATAATCTTGAAACAATATTTTGTTCAGCTTGGGATCATTCTTTCAGATTGGGTTTGTTTCTGTAATTGGTTTTGATTTTTTTTTTTAGTGGGCTAGTTTTTTTATGTGCCCTTGTATTTTATTCTTTCATTTTTCTCTATAAAAGCTCAATTTCGTATAAAAAGAAAGAGAAAGACTATTTCATCCATGCTAATTGCTGCATCATTCTTGATAGTACCTTTCCCTTCCAGGTGGGGTTGGAGTAGGGATCAAGATGCAGGCAAAAGCACTCACAGAACGAAGGGTCTAGCGTTTCGAATCTTGGCTAACCCTAATGTACGCATTAACTCAAGGCTTCTACATTTTTAATGGCTATATATTTAGTTTGCATATATGGTCAAAGATTTTGTAGGTATGTCATTAGAAATTAGTTAGTGGGTGTTTATGGTCAAAGATTTTACGGTAACAAACTGCCTGCTTCCTAGATATATTCAGATAGATCTCCTCAGCCCCCCCACTCAGAATGGAAGACAATCAATCTTCCAATGTCTCTTATGATTAAAATGCAATTTGATGTGGTTATCTATCTGATTTCTTAGACTTATATAGTACATTGACATTCGATATCCATATACAGTTGTTCAGTTTCTTGTTTATTCTATGGACTTATTCGATCTTATGAATTGTATCTACTTTGTCTATCTGTGTTTGAAGATTCCTTTACTTTTTCAATCCTTTTTCATTGAGCTACTATTGAGGTTCCCATATTAGAAATGTGAGGAGATCTTACATTTATAAGATAGATGATCAACTCCACTCATTGACAATTATTTTAGAGATGGAAGCCCATACTAATCTAATATGGTATCGAAGTCCATTAAACTCGTCGGTCCTATAAAAATAAAATTGAGATTCGATCCAAGATAGTGAACCTTAAGAGGCATCATCTTGAGGGGTATGTTGATGATCTCACATTTGTAAGGTGAGGAAACCTTGTAGCATTTATAAAATAGACGAGCTACTCTACTCATTATCAATTGGTTTTAAGATAGAATTTCATACCTCATTTCATTCATGTAATTTATTAGGATAGCATAATACCCCATTCATTATATTTAACTTGAATAAAAACAAAATTGTTTTCAAATCGGGCCTAAGTTGTTTATGGCTTTTGTTCTGCAACAAACATATAACATGTCATTTGGTTAGGTTTCTCCTGGGAAAGATGGTTCAATTAAGGAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGAATGGCTGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGGTAAATGAATTGATCATCAATGGTGCAAATCTTGTTTATTAACCATACAGATAGGTTCTTAAAATGACTATGCAAATAATGTTGTGAAATGTGAATGCAGAGACGACGTCAGATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTTGTCATCGAAGGTCAAACTGGAAAAGGAATTCTAGCACAGGTGAGAAGTTACAGCATTTTATGTTTGTATCATTTTTTTTAACAGTCTTTTGAACAAGAATTTATGGGTTTACATTTGTTGATCCCTATATGCTTGTGAGTGATAGCTTATGAATTTTACTTGATAAGAACTTGTGGGTTCGACCACTTCATTTAGATAAGTTATTAAGTCCCAGTCCCTATGGGATGACCTTGTTGATAGAGTCTTGGGGTCTCCAAAGTATGCCTCTTTAAAGGTCTCAAGTTCAAGATTCACGAGTGAACTTAGTTGTAAAATCCCTTGTTGTTGTCTCCAAGTATCCTTAGGTAAAAAAAGGAAGTTATTAACTGCCAAATTTTATGTTGAATTATGTTAAACTATCAATCAACCCAAAAGCTTCTGGTGGGTTGGGGTAAATTTTAATTATATCAACCAACACTCCCCCTTACTTGTGGGCTTTGAAATTTGAGAACTGCCCTACAAGTGGAATTCAATTTTAATTGGGGTTGAAATGACTCGGCAGGAGGCTCGAACTCAGGACTTCCTGCTCTGGTACCATGTTGAATTATGTTAAACTACCAACCTACCCAAAATGTTAAGTTGATGGGTTGGAGTAAATTTTAATTATATCAACCAACATTTTATAGGGTTGGAAGGTAGTTACCATTTTTTTTGTAAACATGGAGGTGGGAGTTTCATCATAGTTTGGAAGGTTGGACGAAAGTTACCAAGTTTGAAAGGTTGCCAATTCCAACCAGTAACCTCTCAAGTCTTTGAGTTATAATCGCTAAAGCTATTTAGGACCAAGTATTCTCAAATTTCTCCACCTTTCTATTTTGTTCCCCTTCTAGATAATCGTTTTGTTTTTAGTTTTGATTTTTTAGAAATTAAGCTGCTGGTATTTTCTTTGTTTTCCAATTTCTTTGTTCCCCTGTTTGTTTTTACTTTTCTTTGTTCGGATGCTGCTTCTTCTTCTTCTTCTTCTTCTTTGTAACTAGCTGCCTACAACTTTCTCCTCCTCCTTTTATATCAATGAAGGTTTCCGTCTCCTATCACCATTTTTTTCAAATGTCTTAAAATCTTATCGGGGACTCTTAAGGAGAGCATTTATCAAAAAATATTTTTCGTTTTAAGAATTGTCTAAGCTTTCAAGAGTCTTGAGGAGATGGAGAAAACAAGTGATTATTAGGAAATGAGCCTCCCCTCTCCTTTGATAGTTTGTAACTTTTCATTTCATGAATGAAAGTTTTATGTTTCCTATATAAAATTTTTAAAAAAACGAACAGATTTTTTTGAACAAAGATTCTAAAAAAAATATAATTGGTTAGATTGTATCTTTTCGGGCATTGTTGCTTTGTTACCAGGTTTTTTTTAAAAGTTATTTGTTAGGTTTTGTCTCGCTTGAATTGTAGCCCTTTTCTGTAGCTGGCTCTATTTTTATGAACTTCTTTTTGTATATCTGTGTATTCTTTCATCTTTTTAGTTCGATTTAAAAAAAAAAAAAATCTGTAGACATAATACTATTAGATAACAAAATTAATTAGTGATGAGGGGAGTAGCTCATATACCTTATAAAGATGTTGTAGAATGCATTTCCCCAAGACCCGAAGGGTTAGTTTCTAGAAATAGATAAAATAAGCATCAGGCATTCTGAGCTGGAAGAAGGCAAGCAAATGAAGGGAGGCATTAGTATTACGATTCAACTACAAGAAGCAAAAGTTTGTAGACTCGACAAGTCGCTTATAGAATGTCGACTACTAAGTTCAGACTTTCCTATCTTTCTCTTTCTCAAAGACTCCTCACATTTCCAATGTGGGACAAAGTGAGTATCTCCAACGTGCCTCTCAAGATGGTGCGACATTGAAAACACCCACTTGGATTAGATTGGAATTTGTGCATCGATATACCCGCTTAGTCTTACTCGCTTCGGTTGGACATTATCCGGTTGGGTCAGATCCGGTTTATGGATTAAATTCCCGCTTAGGTTGGATCAAAATTTGAGAACCAAATAACTACACATGAGTTCTGCTTGAAAATCAATTGGTGATGAGGAGAGTAATCCATATTACTTATATGTTGAAGATTCCACATCTTTCCAATGTGGGAGAAGGTGCGTACCTGCAACAAAGACAACCAATGCAAGTATAGCTCTGCGGTAAGAGAACATTGGCTACTATAACTTTTTTCTTTAATACTAGTGTGTTTTTTTCTTAATATTTTGTGGGGCTTTTGGCTTGAGAGAAACTATACAATGTTAAGCCTAGTGAACAACAATCACTAGACCTTTTTGTTATTACAATCTTTAGTTTGATTTTGTTGGATTATAGCTCCTTTTGGTAGGTATTTTTTTTAGTTTCCCTTTGGTTGGGCTTGTTTATGGCATGTTCTTGTATTTTCTTTCATTTTTCTTATTGAATTCGTACTAAAACATTCAATTTTTTTTGAAGAGCAAAGAAATTTAAAAACAAAAAATCTTACACAATGTTTATATCACTTATTTTTCCAGTTAGCCGACTACTTTGCTGCTGTCATGAACTTCTTTGTACAATAGACATCTTCAATGGCAGAAGGGTAAGTCCTTTAATGAAAGAATTATTCACTTCTCAACAATTGAAAGTTTAGTATGTTTGATATTTTTGAGCTAAAAAATCTTTCCATTGTAAGATTCTGTACTCTTCATTCTTTTTTTTCTTTTCATGTTTGATTTCTTCACATTTCATACACAAAGTTAACATTTAATTGTGAAGCAGTGTATTCATATGGTTTTGCTTTTGCTTTGGCTGATTTTACTGCAATGCAGTCAATATCCACTATTTAACCTTTTCTTTATACCAT

mRNA sequence

GGAGTCGATAGAATAATAGCTCAAGCGGCATCAATACACACTTAATGATTTATGGATCATAAGTTTAAGATTCAGGGATCATATACAAATAACCCAAGTCAAATCAGAATTAAGATATATTCGAGTGGCAAGGGAGCCATTACAAACCTGTCTCACTCTCTAGAAAATAAAAATGTGGATATGGGCATCTGAAATCTATAAATCAAAACCCCCCATAAATTTCTATATAAACATGGTTTGCTCAAGAAATGGATAAGGATTGTTCATGTGAAGAAGCTGCAGATTTTGGAAATGGCTTCTTCCACTGCGCTGATTCTCCCCATCAATGGAGGAAACCGCCTTTCGTCTTCTCCACGCCTCTCTTTCCGCCATACCCATCCTTCTGCAACTTTCTCCAGGTGGGGTTGGAGTAGGGATCAAGATGCAGGCAAAAGCACTCACAGAACGAAGGGTCTAGCGTTTCGAATCTTGGCTAACCCTAATGTTTCTCCTGGGAAAGATGGTTCAATTAAGGAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGAATGGCTGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAGATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTTGTCATCGAAGGTCAAACTGGAAAAGGAATTCTAGCACAGTTAGCCGACTACTTTGCTGCTGTCATGAACTTCTTTGTACAATAGACATCTTCAATGGCAGAAGGGTAAGTCCTTTAATGAAAGAATTATTCACTTCTCAACAATTGAAAGTTTAGTATGTTTGATATTTTTGAGCTAAAAAATCTTTCCATTGTAAGATTCTGTACTCTTCATTCTTTTTTTTCTTTTCATGTTTGATTTCTTCACATTTCATACACAAAGTTAACATTTAATTGTGAAGCAGTGTATTCATATGGTTTTGCTTTTGCTTTGGCTGATTTTACTGCAATGCAGTCAATATCCACTATTTAACCTTTTCTTTATACCAT

Coding sequence (CDS)

ATGGCTTCTTCCACTGCGCTGATTCTCCCCATCAATGGAGGAAACCGCCTTTCGTCTTCTCCACGCCTCTCTTTCCGCCATACCCATCCTTCTGCAACTTTCTCCAGGTGGGGTTGGAGTAGGGATCAAGATGCAGGCAAAAGCACTCACAGAACGAAGGGTCTAGCGTTTCGAATCTTGGCTAACCCTAATGTTTCTCCTGGGAAAGATGGTTCAATTAAGGAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGAATGGCTGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAGATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTTGTCATCGAAGGTCAAACTGGAAAAGGAATTCTAGCACAGTTAGCCGACTACTTTGCTGCTGTCATGAACTTCTTTGTACAATAG

Protein sequence

MASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

Homology

[Close]

BLAST of Sed0008122 vs. NCBI nr
Match: XP_023538319.1 (uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILAN
Sbjct: 2   ASTALILPIHGGN-------LSFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
           PNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 62  PNVSPGKDNLIKQVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           L++EGQTGKGILAQLA Y AAV+NFFV+
Sbjct: 122 LIVEGQTGKGILAQLAGYLAAVVNFFVR 142

[Close]

BLAST of Sed0008122 vs. NCBI nr
Match: XP_022937783.1 (uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >XP_022937784.1 uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >KAG6586074.1 hypothetical protein SDJN03_18807, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020898.1 hypothetical protein SDJN02_17586 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 4.2e-61
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILAN
Sbjct: 2   ASTALILPIHGGN-------LSFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
           PNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 62  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           L++EGQTGKGILAQLA Y AAV+NFFV+
Sbjct: 122 LIVEGQTGKGILAQLAGYLAAVVNFFVR 142

[Close]

BLAST of Sed0008122 vs. NCBI nr
Match: XP_022969695.1 (uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 4.2e-61
Identity = 126/148 (85.14%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +STALILPI+GGNR +SS  LSFRHTH SATFSRWGWSRD+D G STHRT+G AFRILAN
Sbjct: 2   ASTALILPIHGGNR-TSSQCLSFRHTHSSATFSRWGWSRDRDVGNSTHRTRGQAFRILAN 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
           PNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 62  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           L++EGQTGKGILAQLA Y AAV+NFFV+
Sbjct: 122 LIVEGQTGKGILAQLAGYLAAVVNFFVR 148

[Close]

BLAST of Sed0008122 vs. NCBI nr
Match: XP_008451793.1 (PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451800.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451808.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 8.2e-57
Identity = 122/149 (81.88%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 2   ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILA 61
           A+S +LILPINGGN L  S  LSFRH+HPSATFSR GWSRDQD G+STHRT+G AFRI  
Sbjct: 24  AASASLILPINGGN-LPPSQYLSFRHSHPSATFSRLGWSRDQDVGRSTHRTRGQAFRI-- 83

Query: 62  NPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 121
             NVSP KDG IK+VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA
Sbjct: 84  -SNVSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 143

Query: 122 GLVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           GLVIEGQTGKGILAQLADYF+ ++NFF++
Sbjct: 144 GLVIEGQTGKGILAQLADYFSILINFFIR 168

[Close]

BLAST of Sed0008122 vs. NCBI nr
Match: XP_038889814.1 (uncharacterized protein LOC120079625 [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 3.8e-54
Identity = 118/147 (80.27%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +ST+LILPI GGN L  S  LSFRHTHPSATFSR GWSRDQD G+STHRT+G AF+I   
Sbjct: 2   ASTSLILPIKGGN-LPPSQYLSFRHTHPSATFSRSGWSRDQDVGRSTHRTRGQAFQI--- 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
            NVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKR+RQIEAINGAWAMIGLTAG
Sbjct: 62  SNVSPGKDDLIKQVIMVDPLEAKRIAAKEMEKIKAKEKFKRKRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFV 150
           LVIEGQTGKGILAQL  YF+ V+NFF+
Sbjct: 122 LVIEGQTGKGILAQLGGYFSTVINFFI 144

[Close]

BLAST of Sed0008122 vs. ExPASy TrEMBL
Match: A0A6J1FC77 (uncharacterized protein LOC111444076 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444076 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILAN
Sbjct: 2   ASTALILPIHGGN-------LSFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
           PNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 62  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           L++EGQTGKGILAQLA Y AAV+NFFV+
Sbjct: 122 LIVEGQTGKGILAQLAGYLAAVVNFFVR 142

[Close]

BLAST of Sed0008122 vs. ExPASy TrEMBL
Match: A0A6J1I0N1 (uncharacterized protein LOC111468645 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468645 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 126/148 (85.14%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 3   SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILAN 62
           +STALILPI+GGNR +SS  LSFRHTH SATFSRWGWSRD+D G STHRT+G AFRILAN
Sbjct: 2   ASTALILPIHGGNR-TSSQCLSFRHTHSSATFSRWGWSRDRDVGNSTHRTRGQAFRILAN 61

Query: 63  PNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 122
           PNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 62  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 121

Query: 123 LVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           L++EGQTGKGILAQLA Y AAV+NFFV+
Sbjct: 122 LIVEGQTGKGILAQLAGYLAAVVNFFVR 148

[Close]

BLAST of Sed0008122 vs. ExPASy TrEMBL
Match: A0A1S3BSE0 (uncharacterized protein LOC103492970 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492970 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.0e-57
Identity = 122/149 (81.88%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 2   ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILA 61
           A+S +LILPINGGN L  S  LSFRH+HPSATFSR GWSRDQD G+STHRT+G AFRI  
Sbjct: 24  AASASLILPINGGN-LPPSQYLSFRHSHPSATFSRLGWSRDQDVGRSTHRTRGQAFRI-- 83

Query: 62  NPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 121
             NVSP KDG IK+VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA
Sbjct: 84  -SNVSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 143

Query: 122 GLVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           GLVIEGQTGKGILAQLADYF+ ++NFF++
Sbjct: 144 GLVIEGQTGKGILAQLADYFSILINFFIR 168

[Close]

BLAST of Sed0008122 vs. ExPASy TrEMBL
Match: A0A6J1DIT0 (uncharacterized protein LOC111020859 OS=Momordica charantia OX=3673 GN=LOC111020859 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.1e-54
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 19  SSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIM 78
           SS  LSFRH HP ATFSRWGW+RDQ  GK THRT+G AFRILANPNVSPGKDG +KEVIM
Sbjct: 7   SSQYLSFRHAHPPATFSRWGWNRDQGGGKITHRTRGQAFRILANPNVSPGKDGFVKEVIM 66

Query: 79  VDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLA 138
           VDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL 
Sbjct: 67  VDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLT 126

Query: 139 DYFAAVMNFFVQ 151
           DYF  V++ FV+
Sbjct: 127 DYFNTVVHVFVR 138

[Close]

BLAST of Sed0008122 vs. ExPASy TrEMBL
Match: A0A0A0LH95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058660 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.2e-54
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 2   ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILA 61
           A+STALILPINGGN L  S  LSFRHT PSATFSR GWSR  DAG+ST RT+G AFRI  
Sbjct: 24  AASTALILPINGGN-LPPSQYLSFRHTLPSATFSRLGWSR--DAGRSTRRTRGQAFRI-- 83

Query: 62  NPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 121
             NVSPG+DG IK+VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA
Sbjct: 84  -SNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA 143

Query: 122 GLVIEGQTGKGILAQLADYFAAVMNFFVQ 151
           GLVIEG+TGKGILAQLADYF+ ++NFF++
Sbjct: 144 GLVIEGRTGKGILAQLADYFSILINFFIR 166

[Close]

BLAST of Sed0008122 vs. TAIR 10
Match: AT4G28025.2 (unknown protein. )

HSP 1 Score: 131.0 bits (328), Expect = 8.2e-31
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 31  SATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDPLEAKR 90
           S++  R G  R QDA    +R +    R+LANPNVS    PGK    KEVIMVDPLEAKR
Sbjct: 23  SSSNGRKGLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKR 82

Query: 91  MAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMN 149
           +A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGILAQLA Y++AV++
Sbjct: 83  LASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVH 142

[Close]

BLAST of Sed0008122 vs. TAIR 10
Match: AT4G28025.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-30
Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 26  RHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDP 85
           R   PS++  + G  R QDA    +R +    R+LANPNVS    PGK    KEVIMVDP
Sbjct: 28  RFAIPSSSLVK-GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDP 87

Query: 86  LEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYF 145
           LEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGILAQLA Y+
Sbjct: 88  LEAKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYW 147

Query: 146 AAVMNFF 149
           +AV++ F
Sbjct: 148 SAVVHLF 153

The following BLAST results are available for this feature:

BLAST of Sed0008122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538319.1	2.5e-61	84.46	uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022937783.1	4.2e-61	84.46	uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >XP_0229377...	[more]
XP_022969695.1	4.2e-61	85.14	uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima]	[more]
XP_008451793.1	8.2e-57	81.88	PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_038889814.1	3.8e-54	80.27	uncharacterized protein LOC120079625 [Benincasa hispida]	[more]

BLAST of Sed0008122 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC77	2.0e-61	84.46	uncharacterized protein LOC111444076 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I0N1	2.0e-61	85.14	uncharacterized protein LOC111468645 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3BSE0	4.0e-57	81.88	uncharacterized protein LOC103492970 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DIT0	4.1e-54	84.09	uncharacterized protein LOC111020859 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0LH95	9.2e-54	81.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058660 PE=4 SV=1	[more]

BLAST of Sed0008122 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28025.2	8.2e-31	61.48	unknown protein.	[more]
AT4G28025.1	1.8e-30	59.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 49..109 e-value: 4.0E-5 score: 24.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 15..128 e-value: 1.4E-6 score: 30.3
None	No IPR available	PANTHER	PTHR37752	OS02G0610700 PROTEIN	coord: 11..129
None	No IPR available	PANTHER	PTHR37752:SF1	OS02G0610700 PROTEIN	coord: 11..129
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 75..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008122.1	Sed0008122.1	mRNA
Sed0008122.2	Sed0008122.2	mRNA
Sed0008122.3	Sed0008122.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0046872	metal ion binding