Sed0008093 (gene) Chayote v1

Overview
NameSed0008093
Typegene
OrganismSechium edule (Chayote v1)
Descriptionexosome complex component CSL4
LocationLG08: 25860366 .. 25871812 (-)
RNA-Seq ExpressionSed0008093
SyntenySed0008093
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACCCAATTTTAACTTTTATTTCATAAAATGTAAAACCTATACTATTCGCAGCAGATACGATTGGAGTTAGCGACGGCTGCGGCGAGTATGATGAAACAAGGCGGGGAAGATTCTGCGTTGGTGACTCCCGGTGAAGTTCTTGGAAAATCTTCAGACTTCAAACCTGGGAAAGGCGCTTACGTCGCTAACCACACTGTTTACGCTTCCCTTTCCGGTTTCCGCTGCATTCTTCCCCCTCCTACTGCCTCTTCCGACTCGGTACAACGCTCCCTTTTACTTCCTTTTTTCCTCCATCTTTTGATGTTTGGTATGTGGGGTTCTTCTAATTGTCTTCGTTTGCTCTTGGGATGTTAATCAATCGATTTCTTTCAACCCCATCTAAGTTTCTAATGTCTTTTCCTTCCGACCCGCTTGTAGTTTCTTTCTTTATTTCTGTCTACAAGCCCTCTAGACGGATAAGATTTAGCCTTCAAAAATACTGGGCTAGTAAAGTTTTTAATGTGTAGCATTGCACTGGGCTAAGGGCTTAGATGTTGCTTATATTGTGGACAATTTGCATTGTTAGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCCATTGTCATTGCTCGAGTAAGTTTCTTACTATGTCATCTATATGTGTATAATATTTAAAATGCCATATTTCTTTTGTATAGCATGGGCTGGTGTAGGTTATGGCTGCTAGCCTGCTTCCATCCCCCTTTTCTGTTTACCTTTCCTTATCCTCTATTATTTTGCTCTGGAATCCTGTTGGAAAAAGTAATTTTGCATTCATGGTTCGCTTTCGCTAAGCTTTTGGTCAGGCCACAAGTAGTAGACACTAAAATTTGATGATTATTGGTTTTTGGAGTTCTTGTTCATTTTTTTCTGTATTTTTCTACTGCTTCTTGTGTCTGCTTAATTTTGGTAGTTTGGTAATTAGATTGAAGTTAATTGGAGGTAGTTAGCATAGTGTTTTTCTTACGGTTATTCTCTTTTGCTTAGTTACAAACTTGGTCCCTATGGTTTGGGCAAAGTTTCACTTTGGTCCTTAATGGTTATGAAGTTTCAATTTGATGGTTTCAATTTGTTTGTTATAATTTAGCGAAATTGTAGATTTGTTTTTGACTAAGCTATTCTCTATTTGGGTAATGTGTTACTTGACTGTCATAGAGTTTAGAGCTAAGTAAACATTAAAGAAAATTGGGGTGAAACTGAAACTTAGGCCAAACTATAGGGAAAAAGTTAAAACTATTAAAGGGACAAATTGAAGCGAAGCTCAAACCATGAAACTAAATGGGAATTTTTAAAGTAGTAGAGACTAAATTGAAACTTTGTTCAAACCATAGGAACATATTGAAATTCAATCCTTTTCTTTTCATGCGTCGTACATAAATTCTTTTGCTGAGGATATTTTTGCTATCTTCTTGTTTTTTGTACACGGGGAACTGAGGCTTACGCCTTTAAAGCCTTAAGGGTTTAAGCCTGCACTGAGTTCTATTTTCTATGGTATCTATTTTATTTGGCGTTTAGATCATTATTCTTTGGTCATCTCAGCCAATATTTCTTAATATTTTTTTCCGGTACTTGTGTAGATCACAAAAGTAATGCCTAGAATGGCATCAGCGGATATCATGTGTGTTGGTTCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGTTTGAGACATTCTTTTGCGAAGTTCTTTTTTATTCAGTTTTTTTTTCACCGAGTAGAAAGCTCTTCTATCACATTCTAATTTTTGTTTAATATATATATATATATTGTTGGTTGATATAATTAAATTTACCTCAATCCATCAACTTAGGCTTTTGGATTGATTGGCGGTTTAACATAATTCAAAATGGTATCAGAGCAGGAGGTCATGAGTTCAAATCCCTGTCAAGTCATTTCATCCCCGATTAAAATTAAAGTCCACTTGTAGGGCATTTCTCAAATTTCAAAGCCCACAAATGAGGCGGAGTGTTGGTTGATATAATTAAATTTACCCCAATCCATCAGCTTAGGCTTTTGGATTGATTGGTGGTTTAACATAATTCAACATATATATATATATTGTATTTTCTTCCCTACTTTTACACTATCTTAATTATTTCTGTTTCATGTAAATCAAATAATAAAATTTTATGTAGATTACGAAAAAGATTATGTTGTTGGAAACTTGTAGATTATGGCCAAGGAATTAATTTGAATAGGGGCAGAGCGGAAGACTATTACACCAATTAAGAGATATAAGTGTGATCGAAGAAATAAGCAAATGGGTTCTTGCTCTTTATCAGTGAAAAACCAAGAGTTGCATACCAACCAAAAGAATCAAAGGAAAGCGGTAAGTTCAAACAAAATTCGGCCGAAGGACCTTATTTTCTTTCTTAAATGGATGACCATTAACGACCAAAATGAGAAGATCCCTTATATAGGGAAAAATGATCTGCCAATCAAAAGCTCCCAAAATGAAGTCCTAAAAATTTTCGCTTGAGAACATTGAATAAAAGGTGGTTTTGAGATTAATGCCTTTTTGGCCTAAGACAACTCTCTACGATCGCCTAGCAAAAACGAGACCAAATTCTACAAAGAAATGATTCCAAAAAAAAAAAAAAAAACCACAAGCCAAGTCACAGATTTGGAGCATGTGATCAAGATCCTCCTCAACCCTCCTACACAAGATGCAACATCAAGACCCAACCTCTACACCCTATCTATTGTATTAACTCCAATGTGAAGGACAGGCCAAGCAAAAAGGTCAACCTTATTTTGAATTTCACCTTCCACGACGAGGAAAAATCAAAAGCCTCGTATAAAAGGAAGAGGATTAACCAAAAAAAGGAAAAGGACCTACAGGCTTTGCCTGTGGCCGGACTAGGACTCCAACAACGAACATTTCTCTTCTTTGGAATTCAACAGAACTCGCTCAAGGCCAACAACATCAAGCATTTTTGCCAACAAGAGTAATAGCTCAACCGACATAAGTATGTTTTCAAGACCAAGAGGTCATGTGTTCAAAAACCCCACCCCTATTGTTTTTGAAAAATAAAACAATTCCTGCATTTCCCTATTGGACAACGGATGCTAGAACCACAACAAAGGCGAAGAAAACGGTCCCCCCCCTACCATTGAGGCAATTATGGACAAGAATAGAATCTTTGAATAAGAAACCCCTAATTACCAATAGGAAACCACCTATTGATACTTCTATTAATCTTTAATCTAGAAACAACTTTAAAGGAAGCTAAAAAGTTGTTCAGATTAACGAAAGACTCCCATTACCAGAATAAGAAAATATAGTATCATCAACAAACTGAAATGAGCTCAAAGTTGTCCTGACCGACTTAAAACCCTCAATAACCCTACTCTAGACCTCTCACAAAATGATCCTACTTAAAACATTCATCAATGAAGGTTTTCGTTTCCTATCAAAAAAAAAAAACATCTACCACGAGCTGAGAAATAAAAGGAGAAAGAGGATCTCTTTGTTGAAGCCCTCTAGATGCACAAATCCTACCCTCAGTCGACCATGGACAAAAATAGAATACTTGACAGACCTAACAAAACCCCAAATCCAGGATCTTTGTTGATAACTTTTTGTAAATGGTGGAAGGCACATGTTAAGGAACTTATTTCATATTGCTTGCTTTTTCAGAGGTGTAAATATTCTTATAATGATGGAATAGGGAAACAGATAGTTTCAAGGAACGTTTTAGTTTGATTTTTCATCTTGTTACACTGGTGCAATTAAATTATTGAATCAACTTTAAATGGAAAAAAGTCTAGCGTATCCAAAGGAAGAGTGGAAGACTCATGTGATAGAATCTACCACACTTTTCTATTAAAATAAGATAAACCTCTCGAGAGAATCTCTCAAAGAGCTGCAATACAATGATGATAATTCGATACCAAAAGAGTAACCTAGTCCGCCTATTTATAGCATTCCTAGGATTTAACCTAACTTTGTAAATAACTCTATTTAGGCCCATAGGCCCATTACAACCTAAATTCGCATAATAAAATATATTAAAATAGTAAATAACTCATTCTTCACTTCTTGCTCCGCCTCGAATATACTTTTAATGTTGCCGGGATCGTATCAATACCTCCCCCCCACAGAGCCACCTTGTCCTCAAGGTGAAAGTCCGGAAATTGCAATTCCAAATCACCATGATTCCCAAGTCGCATCCTCTCAAAAGCGAGCCTTCCCATTGAACCAAACTTGACGCGATCCCCGCCGTGTAAATTCTCTGGGCGCCCAACACGGCCTTTAGGGCGAACCACCATGCACAGATCATCTCCCACCAAGGACGGTGTAGACATGACAATAACCGACGTGTCTCGCGCTTTACGCAGAATCGACACGTGAAAAACGGGTGAATCTTAATCTGCCGCGGTAGTTCCAAACGATAAGCAACAGACCCACTCGAGCCAAAGACACGGTAGGGCCCAATAAACCTCGGCGCCCGGCTTCGGTGTTGAAATTTAGCCAAAGAAGATTGGCGGTATGGTCGAAGCTTGATATACACCGATCATCAATATTAAATCGTACATCCCTACGTTTTGCGTTTGCGCGATCCGCCATAGATTGCGCGCTCGCGACAAGCTAGCCTTTAAGGTGGCCAAGATCCGATCACGATCCTTCATCATTGAATCCACGACGCCATCGGGCTAACTCGTGATCATAACCCAACAGGTAGGAGGGGTCCGCCATAAATAATCTCGAAAGGTGTCATACCCGTGGATGAGTGGAAAGAAGTGTTAAAGTCAGTACTCGCCAGGGACAACCATTGGTACCACGCCTTAGGATGATGCACCACAAAACATCTCAAATAGGATTCCAAACAACGATTCACCACCTCGATCCGCCCATCATGCATGGATGGTAAGTGGTGCTCCGACAGAGTTTAGTGCCCGTAGCCTTGAACATCTCTTCCCAAAGCAAACTTGTAAAAACCTTATCGCGGTCGGATACAATACTTTTCTAATCCCATGCAACCGAACGATCTCCTTGATAAACACCTTTGACACCGAAAGGAAGAAAACGGTGTCGAAGAGGTATGAAATGAGAATATTTGGATGAGACGGTCAACCACCACCAAGATAGTGTCATAACCCTCTGGATCGCGGTAAACCTTCCACAAAGTCCATCGAAATATCTTCCTAGACCTGTGCAGGGATCGACAAGGGCTGTAGCAACCCCGCAGGAGATAAAGATAGGTGTTTAGCTTGAACACAGATAGAGCATTCGGCCACAAAGGAACGCACACGAGCCTTCATTCCTTGCCAAGACACTTCCTTAGCTAAATTACCGATAAGTTTTAAGGACTCAAAATGTCCCCAATAGCACCACTATGAAATTCAAGCAAAAGTAGAGGAATCGTTGGGGATGTTGGAGGCAAAACAAGCCTACCCTGATAAAGCAACACATCACCAACTACTGAGTATCCCGGAGGGCCCCCCTCGCCAACGGTCACTGACTTATAAATTTCCATCAACTTAGCATCCTCTTTAACCTGTTGTGTAAATACGGCGGTGTTAATACCCACCACCACACTCAGCATGCCAAGCTCGCATTTCTCGGGCATTCGTGACAAAGCATCCGCGGCTCTATTTTCGAGGCCCTTCTTATATTCGATGCTGAAATCATATCCCATTAATTTCGCAATCCAACGCTGATAGTCGCCATCCACTACACGCTGCTCAAGAAGAAATTTCGACTCTTACGGTCGGTCACGAACAACAAAGTGATGCCCTAGCGAGATAGGCCCGCCAAATACGCACCGCGCGAAAACGATTGCCATCGGTTCACGTTCATATACCGTTTCACCCGATGAGTAATTGGCAATGCCTTGCTAAAATATGCTATCGGTTGACCTGTTGCATCGAATCGCTCCCACCCCGATGCCCGAAGCATCGGTTTCACCACAAATACTTGGTCAAAATCGCAATCGTGAGGATCGGGACACTACTCATATAGCATGTTTCATCTCAAAATCGTCTTGGCGATCGGTCCCCACTCAAACTTCCCTTTCTTTAATAATCAAGTCAACGGAAAAGCCATGGAACCGTAGTTAGCCACAAATCGTCGATAGTATCCGGTCAACCCGAGAATCCTCGGAGGTCCCGAATATTTCGAGGACTTGGCCACTCTATCATCATTGCGATCTTTGCCGGTCGGCAGAGACGCCTTCCACAGAATATAAAGTGCCCTAAGTACTCAATATGTTGCAACCCAAATTGGCACTTCTTCGCATTTGCGGCGAAAGCATGTGCTGCGCAAAGACCTCAAAACACGAGCCGTGCTCCTCCTGTGTTCTGAATAGTCATGTCAGTAAATCAAAATGTCATAAAAAAATACCAAAGACGAACTTACGCAGAGATCGACCGCAAATCTCATTCATCACAGATCGAACGTGGCGGAGCATTCCGCAACCCAAAAGGCATGACTACAAACTCGTAATGTCCTTCATGCGTTCGAAAAAGCTGTCTTGTATATGTCGGTCGGTTTGACACGAATTTGGTGATATCCACCTTTAGATCAATTTTTTCGAAAAACGAAGCGCCATGAAGCTCATCCAACAATTCATCCACCAAATGATATCGGGTATTTATCCCAGATCGTAGCTTGGTTTAAGGCACGCAGAATCGACACGAAAACGCCAACTTCCATCCTTCTTTTCACTAACAAAACAGGGGCTAGAGAAAGAACTCGTAGGCTAGGGCGAATTACCCCGCTAACAACATTTCCGTACTAGTTTTTCTATCTCGTTTTTTTGATATTGTGGGTGCCGTATATGGCGGACATTCACCGAGTTCGTCCCCGCAAATCGGTTCAATCGCATGATCACAGCTTTCTTTCGAGAGTAAATCGCCAAGGATTGAAAAACCGATGAAAAGATTCAATTAAAGAGTGAAGCTCTCGGGTACTCGCGATAAATCCGGAGCATCTTGGTTGGTCCACAATCTGTCTTTGTCGCCTCACACATGTTCAACTCAACGAGTAACCCTTGGTCCTCGGGGCGTAAGGATTTCATCATGGATTTCAAGGATACTTGAGCCTTGACCAACCGGGGTCCCCTTGCAGTGCTGCCGGGACCCCAACACAAACCGCATCTTGAGGGAACTCAAATTGAATTCTATCCTTCCCAATGTTTCTAGCCATGCCACCCCAAAATCACATCTGCGCTACCTAAAGGTAAAGGTAGGAATTCATTTACCACTTTCAATTCAAATTGTGTGTAGTACGACATTTTTACTGATTCCCGCCGTTCGCATGATTCGCTGGTTCCCAACATGATGCCATAATCGTTTGAGGGCTCTATCGGTAACTTTAACTTCTCCACAATGACGTCGGAAATAAAGTTATGGGTGGCCCCACAATCTATCAAAACTACTACCTCCAACCCCGAATAAATCCAAAGGACTTTCAAAGTCTTGGCGAACTCACTTTCCCGCCAAGGAGTTTAAGGACAATGCCGCTAAATCCCTTGTATCGCCTGTATCCACAAAAGTTTCATCCTCCGGTTGCCTCATCATTTTCGTCACGAATCCTCGTGGTCATAGGTGTCGCGTACTACCAATATCTCCAAAGATCAAGTTCTTTCTTTTTGCATCGGTGCGGTCACAAATCTCTCGTCGCAACGGAAACACAACCCTTTATCCTTCCCGACACGGATTTCATCACCATCACAAACGCTTATACTGGCGTAGTGGTTGCTTATCTTGTTTGTAATCGGTTTAGACGTTGAGAACGTAGTCGTTCTCATAGTTGCAACACCCGCTCCCTTCGTACTAACTAGTCCGATCCCACACTTGTTTTGTTCACTAGTCCCGGCTCACCCCTTTTCCTAGTGCTCTGGAAAGCCGGATCATCCTCAATTACTTGTGCCATGAACTTTTTATCTTGTATTCCCACGGGTGCCAATTTTCTCATTTCACTCCTTATTTCTTCTTTTAAACCGCTTTCCCATTTCCCTTCTAACGATCGGCACTAATATCGCGCATTCCCTTAGCATATTTCTCAAACGATCGTAGATATTCTTTAACAAAGCCCTCTTGTCGCAAACTCATCGACTTAGCGTACTGTTGTCATTTATGCTAGGTTGAAATCGGTGTAACAGGAGCTCTCGAAATTCTTCCCAAGAACTGATCGGCGATCGATCTTCCTCATACTGCAGCCATTCCAGAGCCTCACCCTCCATACACAATGCCGCGGCGTCGACTCGTTCCTGCCCATTTAATCGGTTAACCCAAAAATACCGTTCCACTCGACACAACCAACCTTCCGGATCCTCATCGGTAAGACCCTTGAAAACTGGCATCTCGAGCTTAGTAACCTCCTGTCAAATCTGGACTCTTTCGTTCTCCCGTGTTCGGTCCTCCCCCTGCTCATATCGGTCCTCCCACTCTCTCCGATCTTCCCGCTCCCTCTCGATTATAGCCATCCCACCCACGTTCGTTCCAACCGTCGTGCGCTATTGGTCTGTCATGACCGATGCGCACCCTCCTCTCCTCCGGTGACTCGTGGACCCGGCCGCCCACCTTTCGCTCGCCTTCCGGTCCCCCGCTGTTACTCCCATCGCCAAAATCCGGGTATCTCTCTCTCCGATCCCGCTCAATTGGCCCAGACCGACCCGACCCGGTCCCCCTTGACCGCCGCCTGGCCTGCCGTGCCCAACGCCCGACCCGCACGCCGCACTACCCCGCTCACCCCCGACACCTCCTGAGCCCCAGCCCGCTCCTACCGCACCACCCACCGCCCGGCCCCCAGGTCGCACGACCCACAGTGCCTTCGCGACCTAACGCCGCGCGCTGCGCCAACCCCTAACTCGCGCGACCCCGCGTCCACTCCGCCCACGTTCCAGCCCGTGCGCCCGCCTACGACGTGGCCGTCAACCTCTGTCTGCGCCCAGCCTCTTCCGCCCGTCGCCACACGCTCCTGCGCCGCCGCCCGGTCCCCCTCGGCCCCTGCGACGCCTTCGCGCTGACCCGACCCGGCCGAGCCAGCCCACCGCCACGAGCCCACCCCTTCCCTTTGTCCGCACTGCTTGCCTCGGTTTACGCCGTTCCCGGTGTTCGTTCTAGCAACTTTTGTATATTTAGGTTAATTTGACCTATCTCACTATTCATCGCTGCCAGTTGAACCTCGAATTCCTATTGCTTCTTCACCATCTCGGCACCACTCGATTCGCACTCTTGAACCCTAGTCTCCATCTTGGTAGTTACCATTCCCGGATCGGTAAATGGCTCTGATACCAAAATGATAGAATCTACCACACTTTTCTATTAAAATAAGATAAACCTCTCGAGAGAATCTCTCAAAGAGCCGCAATACAATGATGATAATTCGATACCAAAAGAGTAACCTAGTCCGCCTATTTATAGCATTCCTAGGATTTAACCTAACTTTGTAAATAACTCTATTTAGGCCCATAGGCCCATTACAACCTAAATTCGCATAATAAAATATATTAAAATAGTAAATAACTCATTCTTCACTTCTTGCTCCGCCTCGAATATACTTTTAATGTTGCCGGGATCGTATCATCATGCTTATCCAATCCACTTTTTTTAGGAGAAAGCTTTTGTTACATTGTTTTGTCAATCAGTGGTATATTTATACATCATATACTAAATTACCGGTCCTTTAGTTGAAATGTCTTTTTATCTTACCTTGGAAGATCATTTATGCTCTGTCTCAAATCACTTCTGTAGGCAACAAGATGTCCGAGCCACGGAGATTGATAAAGTAGATATGCACTTGTCATTTCATCCCGGTGACATCGTCAAAGCTCTTGTTGTATCCTTTATGCTTGAATTTCATCAGTTGCATGGCTATAAGATCCCTTGAAGATATCTGGTGTAAAATTCTTCTCTTCTCGTCCCAGACAGTTAAAAGATCATATTATTAAGGTCAAAAACAAGTTTAGGCATTAAACTTATAGAGTTGTGTCTAATAAGTCCCTGAATTTTAAAGGGTATCTAATAGAATTTTAAATTCTTAGTTGCACAGGTTTTTAAACTTACGAAAGTATATATAATAGACTCCTGAACTTTTAATCGTGTCTAATTGATCCCAAATTTAGTATACGTTTTTCAAAATTCAACAACATATTACACATAAAATTAAGTTTATCAGACTTATTCATTGTTCAATCCAGAATTACCAAGCAAGAAACTTTGTTTTCTGGATGAGAGAATTTTATTTCATCTTTTTGCTGATGGAGATTTAGTATTTCATTATTGCTCGCACCAAAGATTCCTTCTTGGAGGTTTTGAGTTGAGCGTATTTCTGACCACCATTTTCCTTGACTAAAGTTCTCTCTGAAGCTTTCTCTAGGAGATGCAAGGGCCTATCATCTTTCAACTGCAAAAAATGAACTCGGCGTCGTCTCTGCTGAAAGTACAGAAGGTAAACAGTACTTTTGTTAATGATCATGACATATGAAGTATTCAGCAAATGGCGTGTGGGATTTGTGCGTGTTTTTTGTTCTTTTCTTTTTCTATCTTTCAAATTAACACAAATAGGGTAGCAGACCGTTCATTAAAAGTGGAGTCATACATGTCCAACTATTTGGACATATGCACGTACCCGCATACCCGATGTTGTTATAAAAAAGTTTACCATAAATATTAATTCCAGCATTCATTCAAGTTTAATATTCAATTTGATGAAATAAAGACATTAATAACAGTTTACCTTGAATAACTTGAATAACCATCATAGAGTGGCTTAGTGGTCAAGACTGTCTTAAGATCGGTTCACACCTACTTGGATTTGCTTGACGTTTAATTATAAATAGGATCAGACAATATGTCCTGTGATAATAGTCGATATTAGCGTAAGCTGGCTCAAGCAGGCACACAGATAAAACGAAAATGGTTTACCGTGAATATTCTGTTATTACTTGATCATGAATGAATATTGACCCCTCTTATGGGCAAAAAGCTTTTGAGGCTTACCATCCCATTTGATTTGGAAGGACCTGGTTTTAACTCATGGCAAATTGATGTTATTTTAGGTGCAGTAATGGTTCCCATCAGTTGGACAGAAATGCAGTGTCCATTAACAGGCCAAGTTCAGCAAAGAAAGGTTGCCAAAGTTGGAGGATGACTTGCTCCAACTAGAACAATGCTATCCAATTTTCTTGTTTATTTTTTCCCCTTATGATCTTACTTTTATATTGGTTTTCGTCTCTTAAATGTTGGGTTTCGAGTATAGAAAAGTGCACATTCGACTGTGGTAATTGCATGTTTTAAGATTTGAAATTACATGAGCAGTTTGCCTTTTCTGTATTATAAATAGAGAAGAGAATTTTGTTTCTATTTGCTAGAAAAATTTCCTGGGGACCTACGTAAAAAGACACGTTGGTGTCACATAAATTTTTTTATAAATAAAAATTATT

mRNA sequence

GAAACCCAATTTTAACTTTTATTTCATAAAATGTAAAACCTATACTATTCGCAGCAGATACGATTGGAGTTAGCGACGGCTGCGGCGAGTATGATGAAACAAGGCGGGGAAGATTCTGCGTTGGTGACTCCCGGTGAAGTTCTTGGAAAATCTTCAGACTTCAAACCTGGGAAAGGCGCTTACGTCGCTAACCACACTGTTTACGCTTCCCTTTCCGGTTTCCGCTGCATTCTTCCCCCTCCTACTGCCTCTTCCGACTCGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCCATTGTCATTGCTCGAATCACAAAAGTAATGCCTAGAATGGCATCAGCGGATATCATGTGTGTTGGTTCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGCAACAAGATGTCCGAGCCACGGAGATTGATAAAGTAGATATGCACTTGTCATTTCATCCCGGTGACATCGTCAAAGCTCTTGTTCTTTCTCTAGGAGATGCAAGGGCCTATCATCTTTCAACTGCAAAAAATGAACTCGGCGTCGTCTCTGCTGAAAGTACAGAAGGTGCAGTAATGGTTCCCATCAGTTGGACAGAAATGCAGTGTCCATTAACAGGCCAAGTTCAGCAAAGAAAGGTTGCCAAAGTTGGAGGATGACTTGCTCCAACTAGAACAATGCTATCCAATTTTCTTGTTTATTTTTTCCCCTTATGATCTTACTTTTATATTGGTTTTCGTCTCTTAAATGTTGGGTTTCGAGTATAGAAAAGTGCACATTCGACTGTGGTAATTGCATGTTTTAAGATTTGAAATTACATGAGCAGTTTGCCTTTTCTGTATTATAAATAGAGAAGAGAATTTTGTTTCTATTTGCTAGAAAAATTTCCTGGGGACCTACGTAAAAAGACACGTTGGTGTCACATAAATTTTTTTATAAATAAAAATTATT

Coding sequence (CDS)

ATGATGAAACAAGGCGGGGAAGATTCTGCGTTGGTGACTCCCGGTGAAGTTCTTGGAAAATCTTCAGACTTCAAACCTGGGAAAGGCGCTTACGTCGCTAACCACACTGTTTACGCTTCCCTTTCCGGTTTCCGCTGCATTCTTCCCCCTCCTACTGCCTCTTCCGACTCGAGACCAACTGTGGAAGTGACCGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCTGGATCCATTGTCATTGCTCGAATCACAAAAGTAATGCCTAGAATGGCATCAGCGGATATCATGTGTGTTGGTTCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGCAACAAGATGTCCGAGCCACGGAGATTGATAAAGTAGATATGCACTTGTCATTTCATCCCGGTGACATCGTCAAAGCTCTTGTTCTTTCTCTAGGAGATGCAAGGGCCTATCATCTTTCAACTGCAAAAAATGAACTCGGCGTCGTCTCTGCTGAAAGTACAGAAGGTGCAGTAATGGTTCCCATCAGTTGGACAGAAATGCAGTGTCCATTAACAGGCCAAGTTCAGCAAAGAAAGGTTGCCAAAGTTGGAGGATGA

Protein sequence

MMKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQCPLTGQVQQRKVAKVGG
Homology
[Close]
BLAST of Sed0008093 vs. NCBI nr
Match: KAG7020862.1 (Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 176/196 (89.80%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Sed0008093 vs. NCBI nr
Match: XP_023530831.1 (exosome complex component CSL4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 176/196 (89.80%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 3   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 62

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 63  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 122

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQC
Sbjct: 123 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 182

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 183 PLTGQIQQRKVAKVGG 198

[Close]
BLAST of Sed0008093 vs. NCBI nr
Match: XP_022974279.1 (exosome complex component CSL4 [Cucurbita maxima])

HSP 1 Score: 348.2 bits (892), Expect = 4.6e-92
Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 5   MKVGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 64

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 65  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 124

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQC
Sbjct: 125 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 184

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 185 PLTGQIQQRKVAKVGG 200

[Close]
BLAST of Sed0008093 vs. NCBI nr
Match: XP_022934020.1 (exosome complex component CSL4 [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 7.9e-92
Identity = 174/196 (88.78%), Postives = 184/196 (93.88%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIV AR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Sed0008093 vs. NCBI nr
Match: KAG6588300.1 (Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 173/193 (89.64%), Postives = 182/193 (94.30%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 180

Query: 182 PLTGQVQQRKVAK 195
           PLTGQ+QQRKVAK
Sbjct: 181 PLTGQIQQRKVAK 193

[Close]
BLAST of Sed0008093 vs. ExPASy Swiss-Prot
Match: Q9Y3B2 (Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.0e-34
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 0 

Query: 14  PGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGHKAHGAVP 73
           PGE L    +  PG G Y  +  +++SL+G  C++   ++ + + P V V        +P
Sbjct: 10  PGERLCNLEEGSPGSGTYTRHGYIFSSLAG--CLM--KSSENGALPVVSVVRETESQLLP 69

Query: 74  APGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDMHLSFHPG 133
             G+IV  +++ +  R A   I+ VGS  +K  F G IR++DVRATE DKV+++ SF PG
Sbjct: 70  DVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPG 129

Query: 134 DIVKALVLSLGDARA-YHLSTAKNELGVVSAESTEGAVMVPISWTEMQCPLTGQVQQRKV 193
           DIV A V+SLGDA++ Y L+TA+NELGVV A S  G  MVPISW EMQCP T   + RKV
Sbjct: 130 DIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKV 188

Query: 194 AKV 196
           A+V
Sbjct: 190 ARV 188

[Close]
BLAST of Sed0008093 vs. ExPASy Swiss-Prot
Match: Q9DAA6 (Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.0e-34
Identity = 82/183 (44.81%), Postives = 115/183 (62.84%), Query Frame = 0 

Query: 14  PGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGHKAHGAVP 73
           PGE L    +  PG G Y  +  +++SL+G  C++   T+ + + P V V        +P
Sbjct: 10  PGERLCNLEEGSPGSGTYTRHGYIFSSLAG--CLM--KTSENGAVPVVSVMRETESQLLP 69

Query: 74  APGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDMHLSFHPG 133
             G++V  +++ +  R A   I+ VGS  +K  F G IR++D+RATE DKV+++ SF PG
Sbjct: 70  DVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPG 129

Query: 134 DIVKALVLSLGDARA-YHLSTAKNELGVVSAESTEGAVMVPISWTEMQCPLTGQVQQRKV 193
           DIV A V+SLGDA++ Y L+TA+NELGVV A S  G  MVPISW EMQCP T   + RKV
Sbjct: 130 DIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKV 188

Query: 194 AKV 196
           A+V
Sbjct: 190 ARV 188

[Close]
BLAST of Sed0008093 vs. ExPASy Swiss-Prot
Match: O59821 (Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-24
Identity = 72/185 (38.92%), Postives = 108/185 (58.38%), Query Frame = 0 

Query: 11  LVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGHKAHG 70
           LV PG+V+ + +    G+G       + ++ +G   I  P   S      VE T      
Sbjct: 3   LVLPGQVVARGA--PNGEGTVKRGDYIISTRTG---IFDPEKNSVTYPRKVEET-----A 62

Query: 71  AVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDMHLSF 130
            +P  GSIV+AR++++  R A+ +I  V     K++F G+I  QD+RATE +KV +  SF
Sbjct: 63  VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSF 122

Query: 131 HPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTE-GAVMVPISWTEMQCPLTGQVQQ 190
            PGDIV+ALV+SLGD  +Y L+TA+N+LGV+ A+S+E G  M P+ +  MQ   +G  + 
Sbjct: 123 RPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEM 176

Query: 191 RKVAK 195
           RK AK
Sbjct: 183 RKCAK 176

[Close]
BLAST of Sed0008093 vs. ExPASy Swiss-Prot
Match: P53859 (Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CSL4 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-18
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 0 

Query: 72  VPAPGSIVIARITKVMPRMASADIMCV--------------------------------- 131
           +P  G IV+ R+T++  + A+ +I+ V                                 
Sbjct: 132 LPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVS 191

Query: 132 -GSKSVKEKFTGIIRQQDVRATEIDKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNE 191
             S  + E F GIIR QDVR+T+ D+V +   F PGDIV+A VLSLGD   Y+L+TA+N+
Sbjct: 192 QASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARND 251

Query: 192 LGVVSAESTEGA--VMVPISWTEMQCPLTGQVQQRKVAK 195
           LGVV A +  GA  +M    W  M  P+TG  ++RK AK
Sbjct: 252 LGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290

[Close]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match: A0A6J1IH52 (exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.2e-92
Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 5   MKVGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 64

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 65  EVTGHKAHGAVPAPGSIVIARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 124

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQC
Sbjct: 125 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQC 184

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 185 PLTGQIQQRKVAKVGG 200

[Close]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match: A0A6J1F6G8 (exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92
Identity = 174/196 (88.78%), Postives = 184/196 (93.88%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G E++  VTPGEVLGK SD KPGKGAYVAN+TVYASLSGFR I+ PPT SSDSRPTV
Sbjct: 1   MKEGEEETEFVTPGEVLGKFSDMKPGKGAYVANNTVYASLSGFRRIISPPTDSSDSRPTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIV AR+TKVMPRMASADIMCVG KSVKEKF+G+IRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVTARVTKVMPRMASADIMCVGPKSVKEKFSGVIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVM+PISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMIPISWTEMQC 180

Query: 182 PLTGQVQQRKVAKVGG 198
           PLTGQ+QQRKVAKVGG
Sbjct: 181 PLTGQIQQRKVAKVGG 196

[Close]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match: A0A6J1DE54 (exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.0e-89
Identity = 172/191 (90.05%), Postives = 178/191 (93.19%), Query Frame = 0 

Query: 7   EDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGH 66
           E++  VTPGEVLGK SD K GKGAYVAN+TVYASLSGFR ILPPP  SSDSRPTVEVTGH
Sbjct: 5   EETQFVTPGEVLGKPSDLKSGKGAYVANNTVYASLSGFRRILPPPPNSSDSRPTVEVTGH 64

Query: 67  KAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDM 126
           KAHGAVPAPGS+VIAR+T VM RMASADIMCVG KSVKEKFTGIIRQQDVRATEIDKVDM
Sbjct: 65  KAHGAVPAPGSVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDM 124

Query: 127 HLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQCPLTGQ 186
           HLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GAVMVPISWTEMQCPLTGQ
Sbjct: 125 HLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQ 184

Query: 187 VQQRKVAKVGG 198
           +QQRKVAKVGG
Sbjct: 185 IQQRKVAKVGG 195

[Close]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match: A0A1S3CMV8 (exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88
Identity = 167/196 (85.20%), Postives = 182/196 (92.86%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G +++  VTPGE+LG  SDFKPG+GAYVA++TVYASLSGFR I+PPP+ SSD R TV
Sbjct: 1   MKEGEKETEFVTPGEILGNFSDFKPGRGAYVADNTVYASLSGFRRIIPPPSDSSDLRSTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVIAR+TKVM +MASADIMCVG KSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIARVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDA+AYHLSTAKNELGVVSAEST GA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDAKAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 182 PLTGQVQQRKVAKVGG 198
           P+TGQ+QQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match: A0A0A0L935 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.7e-87
Identity = 167/196 (85.20%), Postives = 179/196 (91.33%), Query Frame = 0 

Query: 2   MKQGGEDSALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTV 61
           MK+G +D+  VTPGEVLG  SDFKPG+GAYV ++TVYASLSGFR I+ PP+ SSD R TV
Sbjct: 1   MKEGEKDTEFVTPGEVLGNFSDFKPGRGAYVTDNTVYASLSGFRRIIHPPSDSSDLRSTV 60

Query: 62  EVTGHKAHGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEI 121
           EVTGHKAHGAVPAPGSIVI R+TKVM +MASADIMCVG KSVKEKFTGIIRQQDVRATEI
Sbjct: 61  EVTGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATEI 120

Query: 122 DKVDMHLSFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQC 181
           DKVDMHLSF PGDIVKALVLSLGDARAYHLSTAKNELGVVSAEST GA MVPISWTEMQC
Sbjct: 121 DKVDMHLSFRPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAEMVPISWTEMQC 180

Query: 182 PLTGQVQQRKVAKVGG 198
           P+TGQ+QQRKVAKVGG
Sbjct: 181 PVTGQIQQRKVAKVGG 196

[Close]
BLAST of Sed0008093 vs. TAIR 10
Match: AT5G38890.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 273.9 bits (699), Expect = 1.0e-73
Identity = 135/188 (71.81%), Postives = 159/188 (84.57%), Query Frame = 0 

Query: 9   SALVTPGEVLGKSSDFKPGKGAYVANHTVYASLSGFRCILPPPTASSDSRPTVEVTGHKA 68
           + LVTPG+V+GK+++FK GKGAYV + T+YASL+G   I+ P   S D R  VEVTGHKA
Sbjct: 3   TGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62

Query: 69  HGAVPAPGSIVIARITKVMPRMASADIMCVGSKSVKEKFTGIIRQQDVRATEIDKVDMHL 128
           HG +P  GS+VIAR+TKVM +MA+ DI+CVGSK+V+E F G+IRQQDVRATEIDKVDMH 
Sbjct: 63  HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQ 122

Query: 129 SFHPGDIVKALVLSLGDARAYHLSTAKNELGVVSAESTEGAVMVPISWTEMQCPLTGQVQ 188
           SFH GDIV+A+VLSLGDARAY+LSTAKNELGVVSAES  G  MVPISWTEMQCPL+GQ +
Sbjct: 123 SFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTE 182

Query: 189 QRKVAKVG 197
           QRKVAKVG
Sbjct: 183 QRKVAKVG 190

The following BLAST results are available for this feature:
BLAST of Sed0008093 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020862.11.6e-9289.80Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023530831.11.6e-9289.80exosome complex component CSL4 [Cucurbita pepo subsp. pepo][more]
XP_022974279.14.6e-9289.80exosome complex component CSL4 [Cucurbita maxima][more]
XP_022934020.17.9e-9288.78exosome complex component CSL4 [Cucurbita moschata][more]
KAG6588300.11.1e-9089.64Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. ... [more]
BLAST of Sed0008093 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y3B26.0e-3445.36Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1[more]
Q9DAA66.0e-3444.81Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1[more]
O598214.3e-2438.92Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
P538596.0e-1836.48Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... [more]
BLAST of Sed0008093 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IH522.2e-9289.80exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 ... [more]
A0A6J1F6G83.8e-9288.78exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=... [more]
A0A6J1DE541.0e-8990.05exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE... [more]
A0A1S3CMV83.3e-8885.20exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1[more]
A0A0A0L9353.7e-8785.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1[more]
BLAST of Sed0008093 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38890.11.0e-7371.81Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 10..48
e-value: 2.6E-9
score: 38.6
NoneNo IPR availableGENE3D2.40.50.140coord: 66..196
e-value: 1.9E-53
score: 181.7
NoneNo IPR availableCDDcd05791S1_CSL4coord: 72..161
e-value: 2.16564E-47
score: 148.548
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 11..46
IPR019495Exosome complex component CSL4, C-terminalPFAMPF10447EXOSC1coord: 100..143
e-value: 7.1E-11
score: 42.7
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 11..45
e-value: 4.6E-13
score: 48.7
IPR039771Exosome complex component Csl4PANTHERPTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDcoord: 2..196
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 72..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008093.1Sed0008093.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding