Sed0008088 (gene) Chayote v1

Overview


Name	Sed0008088
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Stress response protein nst1
Location	LG01: 70672837 .. 70673019 (+)
RNA-Seq Expression	Sed0008088
Synteny	Sed0008088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATAGGCTGTATGGGATGGGGAGTGTGTTGATAATGCTTGTAGTGGCTGGTTTGGTTTTGTTTCTGCCGCTGGTGATCGGAACACTTCAGCCGCCGTCCGGCCTTGTGCTGTTCCTTTTTCCGGTCATTCTCGCGGTGGTGTTCATCTGTCTCGCATTCGCATCCTCCGATTGA

mRNA sequence

ATGGAAGAAGATAGGCTGTATGGGATGGGGAGTGTGTTGATAATGCTTGTAGTGGCTGGTTTGGTTTTGTTTCTGCCGCTGGTGATCGGAACACTTCAGCCGCCGTCCGGCCTTGTGCTGTTCCTTTTTCCGGTCATTCTCGCGGTGGTGTTCATCTGTCTCGCATTCGCATCCTCCGATTGA

Coding sequence (CDS)

ATGGAAGAAGATAGGCTGTATGGGATGGGGAGTGTGTTGATAATGCTTGTAGTGGCTGGTTTGGTTTTGTTTCTGCCGCTGGTGATCGGAACACTTCAGCCGCCGTCCGGCCTTGTGCTGTTCCTTTTTCCGGTCATTCTCGCGGTGGTGTTCATCTGTCTCGCATTCGCATCCTCCGATTGA

Protein sequence

MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASSD

Homology

[Close]

BLAST of Sed0008088 vs. NCBI nr
Match: XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          MEE  ++GMGSVLIMLVV GLVLFLPL+IG+LQPPSG +L LFPV LA VF  L+ ASS
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASS 59

[Close]

BLAST of Sed0008088 vs. NCBI nr
Match: XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          ME+  ++GMGSVL+MLVV GLVLFLPLVIG+LQPPSGL+L +FPV LA VF  L+ ASS
Sbjct: 1  MEKTSVFGMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRASS 59

[Close]

BLAST of Sed0008088 vs. NCBI nr
Match: XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          MEE  ++GMGSVLIMLVV GLVL LPLVIG+LQPPSG +L LFPV LA VF  L+ ASS
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRASS 59

[Close]

BLAST of Sed0008088 vs. NCBI nr
Match: KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASSD 60
           M E+ + GMGSVLIMLVV G +LFLPLVIG++QPPSGL+L +FPV LA VF  L+ ASS+
Sbjct: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111

[Close]

BLAST of Sed0008088 vs. NCBI nr
Match: KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLA 56
          MEE  ++GMGSVLIMLVV GLVL LPLVIG+LQPPSG +L LFPV LA VF  L+
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55

[Close]

BLAST of Sed0008088 vs. ExPASy TrEMBL
Match: A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          MEE  ++GMGSVLIMLVV GLVLFLPL+IG+LQPPSG +L LFPV LA VF  L+ ASS
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASS 59

[Close]

BLAST of Sed0008088 vs. ExPASy TrEMBL
Match: A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          MEE  ++GMGSVLIMLVV GLVLFLPL+IG+LQPPSG +L LFPV LA VF  L+ ASS
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASS 59

[Close]

BLAST of Sed0008088 vs. ExPASy TrEMBL
Match: A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 2  EEDRLYGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFASS 60
          +++ + G+ SV+++LVVA L+LFLPL +G +QPPS   L +FP++L VVFI L+ ASS
Sbjct: 34 KDNGVCGVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91

[Close]

BLAST of Sed0008088 vs. TAIR 10
Match: AT4G14315.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 9.0e-05
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 7  YGMGSVLIMLVVAGLVLFLPLVIGTLQPPSGLVLFLFPVILAVVFICLAFAS 59
          +GMGSVL ++VVA ++LF+PL++G +  PS  ++ +FPV+L  VF+ L F S
Sbjct: 7  FGMGSVLAIVVVALMLLFVPLMMGPVTAPSLPMILMFPVVLLFVFLYLHFTS 58

The following BLAST results are available for this feature:

BLAST of Sed0008088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447644.1	1.8e-10	72.88	PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str...	[more]
XP_038888108.1	3.9e-10	71.19	uncharacterized protein LOC120078008 [Benincasa hispida]	[more]
XP_011652820.1	5.1e-10	72.88	uncharacterized protein LOC105435116 [Cucumis sativus]	[more]
KAG7011309.1	3.3e-09	66.67	hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8650841.1	5.7e-09	72.73	hypothetical protein Csa_017605, partial [Cucumis sativus]	[more]

BLAST of Sed0008088 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8Q7	8.5e-11	72.88	Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BHY2	8.5e-11	72.88	uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=...	[more]
A0A2P5EXP0	7.7e-04	51.72	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV...	[more]

BLAST of Sed0008088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14315.1	9.0e-05	48.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008088.1	Sed0008088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane