Sed0007979 (gene) Chayote v1

Overview


Name	Sed0007979
Type	gene
Organism	Sechium edule (Chayote v1)
Description	activating signal cointegrator 1
Location	LG01: 17754837 .. 17755616 (+)
RNA-Seq Expression	Sed0007979
Synteny	Sed0007979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGTTCCAACTTCAAACTTACATGCCTATGTCAAGCCACAAAATTTGATTGACAATTGTTTTTGTACTACAAAATTTGATTGACAATTGTTTTTGGATATCAGGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTAACAAATCATCTTCTATTTAACTATTGTTGACTAAATGTTTTCTTCTTAATGATTAACTATGTTTTAGTTCTAGCCAACAACATGGATAATAGACCACCATCCCTTACAGTGTAAAATATTGTTGGAAAGTTAGCTTCTCCAGGTTCCCTCTACATTTGTTAATGCGTAATAATTTGGTGGATTCATTCTGGAAATATTAATCTAATCTACTTTTCTCTTGGCCTGCTGCTCTCTATATTCTCTTGTGTTTTGTTTATTACATGTTTGGAAGTGATTTAAAATCATTTTGGTCACGTTCAAAATTACTCATAAACATGTTTTGTATCTTGGGTAGGTTCCTATGAATGAAGATGTTGCTTCTGAATACGAATCGCACAACAATATCTTGCGACCACCGGACGAAAGAGAAGTGAACCAGATTAAACCAAACCCATCTATTCAAATTCATCCAATCTTCTTAGATCCGGACCCCAGAGAGAAGTCGACCAAAGGTAGAAACTGA

mRNA sequence

ATGAGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTTCCTATGAATGAAGATGTTGCTTCTGAATACGAATCGCACAACAATATCTTGCGACCACCGGACGAAAGAGAAGTGAACCAGATTAAACCAAACCCATCTATTCAAATTCATCCAATCTTCTTAGATCCGGACCCCAGAGAGAAGTCGACCAAAGGTAGAAACTGA

Coding sequence (CDS)

ATGAGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTTCCTATGAATGAAGATGTTGCTTCTGAATACGAATCGCACAACAATATCTTGCGACCACCGGACGAAAGAGAAGTGAACCAGATTAAACCAAACCCATCTATTCAAATTCATCCAATCTTCTTAGATCCGGACCCCAGAGAGAAGTCGACCAAAGGTAGAAACTGA

Protein sequence

MRKSVIDEHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN

Homology

[Close]

BLAST of Sed0007979 vs. NCBI nr
Match: XP_022137696.1 (uncharacterized protein C1A6.01c [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 3.1e-32
Identity = 81/115 (70.43%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNS--WLSN--EEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED ASE ESHNNILRP DEREVN+IKPNP++QIHP+FLDP PREKSTKGRN
Sbjct: 315 VLLNEDDASELESHNNILRPLDEREVNRIKPNPTLQIHPVFLDPGPREKSTKGRN 365

[Close]

BLAST of Sed0007979 vs. NCBI nr
Match: XP_038894201.1 (uncharacterized protein LOC120082886 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNS--WLSN--EEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED ASE ESHNNILR PDEREVN+IKPNPS+QIHP+FLDP PREKSTK  N
Sbjct: 315 VLLNEDDASELESHNNILRTPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKDTN 365

[Close]

BLAST of Sed0007979 vs. NCBI nr
Match: XP_023001344.1 (uncharacterized protein LOC111495503 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-31
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G++   I+    EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNNWLSIE----EKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 VLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRN 365

[Close]

BLAST of Sed0007979 vs. NCBI nr
Match: KAG7020046.1 (Activating signal cointegrator 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.8e-31
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 2   RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIG 61
           R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+G
Sbjct: 255 RTSVIDD------QSDYYQIEGNNWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVG 314

Query: 62  RKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           RKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 RKVLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRN 365

[Close]

BLAST of Sed0007979 vs. NCBI nr
Match: XP_023519595.1 (uncharacterized protein LOC111782962 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 5.8e-31
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 2   RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIG 61
           R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+G
Sbjct: 255 RTSVIDD------QSDYYQIEGNNWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVG 314

Query: 62  RKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           RKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 RKVLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRN 365

[Close]

BLAST of Sed0007979 vs. ExPASy TrEMBL
Match: A0A6J1C7E8 (uncharacterized protein C1A6.01c OS=Momordica charantia OX=3673 GN=LOC111009070 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 81/115 (70.43%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNS--WLSN--EEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED ASE ESHNNILRP DEREVN+IKPNP++QIHP+FLDP PREKSTKGRN
Sbjct: 315 VLLNEDDASELESHNNILRPLDEREVNRIKPNPTLQIHPVFLDPGPREKSTKGRN 365

[Close]

BLAST of Sed0007979 vs. ExPASy TrEMBL
Match: A0A6J1KMG5 (uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G++   I+    EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNNWLSIE----EKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 VLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPGPREKSTKPRN 365

[Close]

BLAST of Sed0007979 vs. ExPASy TrEMBL
Match: A0A6J1E707 (uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC111431364 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 2   RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIG 61
           R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+G
Sbjct: 255 RTSVIDD------QSDYYQIEGNNWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVG 314

Query: 62  RKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           RKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 RKVLLNEDDTSELESRNSILRPPDEREVNRIKPNPSLQIHPVFLDPCPREKSTKPRN 365

[Close]

BLAST of Sed0007979 vs. ExPASy TrEMBL
Match: A0A0A0LSM8 (zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 77/115 (66.96%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 2   RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
           R SVID   ++ +++G+S  ++     EKELL+KKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 255 RTSVIDDQSDYYQIEGNS--WLSN--EEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRK 314

Query: 62  VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
           V +NED +SE ESH NI+RP DEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 315 VLLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRN 365

[Close]

BLAST of Sed0007979 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 2    RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRK 61
            R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRK
Sbjct: 1032 RTSVIDDQSDYYQIEGNS--WLSN--EEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRK 1091

Query: 62   VPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTKGRN 114
            V +NED +SE ESH NILR  DEREVN+IKPNPS+QIHP+FLDP PREKSTK RN
Sbjct: 1092 VLLNEDDSSELESHTNILRRADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRN 1142

[Close]

BLAST of Sed0007979 vs. TAIR 10
Match: AT3G47610.1 (transcription regulators;zinc ion binding )

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-23
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 2   RKSVIDEHLRLQGHSDHYIKP-----PLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIG 61
           R +VID+       SD+Y           EKEL+RKK+E I+EAER K++KVV+TFDLIG
Sbjct: 237 RTTVIDD------QSDYYESESSTWLSAEEKELVRKKREEIEEAERVKKSKVVMTFDLIG 296

Query: 62  RKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREK 108
           RKV +NED  SE ES N IL PP+ + VN+IKPNP+ ++ PIFLDP P EK
Sbjct: 297 RKVLLNEDDISELESGNRILGPPETKNVNRIKPNPTARLVPIFLDPGPTEK 341

The following BLAST results are available for this feature:

BLAST of Sed0007979 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137696.1	3.1e-32	70.43	uncharacterized protein C1A6.01c [Momordica charantia]	[more]
XP_038894201.1	2.6e-31	69.57	uncharacterized protein LOC120082886 [Benincasa hispida]	[more]
XP_023001344.1	4.5e-31	68.70	uncharacterized protein LOC111495503 [Cucurbita maxima]	[more]
KAG7020046.1	5.8e-31	69.23	Activating signal cointegrator 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023519595.1	5.8e-31	69.23	uncharacterized protein LOC111782962 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0007979 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7E8	1.5e-32	70.43	uncharacterized protein C1A6.01c OS=Momordica charantia OX=3673 GN=LOC111009070 ...	[more]
A0A6J1KMG5	2.2e-31	68.70	uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503...	[more]
A0A6J1E707	4.8e-31	69.23	uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A0A0LSM8	1.1e-30	66.96	zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE...	[more]
A0A5A7T3B5	3.1e-30	67.83	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Sed0007979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47610.1	3.6e-23	54.95	transcription regulators;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..113
None	No IPR available	PANTHER	PTHR12963:SF4	TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN	coord: 25..112
IPR039128	Activating signal cointegrator 1-like	PANTHER	PTHR12963	THYROID RECEPTOR INTERACTING PROTEIN RELATED	coord: 25..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007979.1	Sed0007979.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0008270	zinc ion binding