Sed0007969 (gene) Chayote v1

Overview
NameSed0007969
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG09: 32328180 .. 32328793 (-)
RNA-Seq ExpressionSed0007969
SyntenySed0007969
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTGCAAGTATTATTCATGAAGGTAATAAGTGGGATACAAATTTGATTAAGGCGATTTGCTCGAAAGAAGAGGCTGATGCTATTTGTGGCATCCCGTTGGGGTCAATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCTAACGGTGTGTTCAGTGTGAAAAGTGCCTACCACTTAGCGATGGATTTATCTAGAGTTGGAGAAGCTTCTACCTCTGATAATTCGATGTCAACAAAGTTGTGGAATTCTTTCTGGAAGGTTGAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAATATTTTGAAAAATATGATTCCGACAAGGGCCAACATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGTGATTAAGGATTGCAAGTATGCGGTCCATGTGTGGATGTCTATTTTTCCTGCATTAACTGACTTTATTTCTTTTTTCAGGAATGCTTACTCGGGGGAATTATTTTGGCAAGGAATTTGTGCAAAAATCCCTATTCAGGATCGGCCAAAAGCCGTAGTTATAATTTGGCAACTTTGGAACTTTCGAAATTCTGTGTTGCATAG

mRNA sequence

ATGAAAGTTGCAAGTATTATTCATGAAGGTAATAAGTGGGATACAAATTTGATTAAGGCGATTTGCTCGAAAGAAGAGGCTGATGCTATTTGTGGCATCCCGTTGGGGTCAATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCTAACGGTGTGTTCAGTGTGAAAAGTGCCTACCACTTAGCGATGGATTTATCTAGAGTTGGAGAAGCTTCTACCTCTGATAATTCGATGTCAACAAAGTTGTGGAATTCTTTCTGGAAGGTTGAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAATATTTTGAAAAATATGATTCCGACAAGGGCCAACATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGTGATTAAGGATTGCAAGTATGCGGTCCATGAATGCTTACTCGGGGGAATTATTTTGGCAAGGAATTTGTGCAAAAATCCCTATTCAGGATCGGCCAAAAGCCGTAGTTATAATTTGGCAACTTTGGAACTTTCGAAATTCTGTGTTGCATAG

Coding sequence (CDS)

ATGAAAGTTGCAAGTATTATTCATGAAGGTAATAAGTGGGATACAAATTTGATTAAGGCGATTTGCTCGAAAGAAGAGGCTGATGCTATTTGTGGCATCCCGTTGGGGTCAATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCTAACGGTGTGTTCAGTGTGAAAAGTGCCTACCACTTAGCGATGGATTTATCTAGAGTTGGAGAAGCTTCTACCTCTGATAATTCGATGTCAACAAAGTTGTGGAATTCTTTCTGGAAGGTTGAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAATATTTTGAAAAATATGATTCCGACAAGGGCCAACATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGTGATTAAGGATTGCAAGTATGCGGTCCATGAATGCTTACTCGGGGGAATTATTTTGGCAAGGAATTTGTGCAAAAATCCCTATTCAGGATCGGCCAAAAGCCGTAGTTATAATTTGGCAACTTTGGAACTTTCGAAATTCTGTGTTGCATAG

Protein sequence

MKVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGIILARNLCKNPYSGSAKSRSYNLATLELSKFCVA
Homology
BLAST of Sed0007969 vs. NCBI nr
Match: XP_035544594.1 (uncharacterized protein LOC118347987 [Juglans regia])

HSP 1 Score: 112.1 bits (279), Expect = 5.3e-21
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 0

Query: 2    KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 61
            +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W+ +  G+FSV+SAYH
Sbjct: 937  RVCELMQGRGEWNTLLIRNIFNKEEADQICSIPISSMEVEDRLVWSPSKKGIFSVRSAYH 996

Query: 62   LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 121
            L M+  +      S +    K W+S W+++   K+KL  W    + + T+ N+  K I  
Sbjct: 997  LEMERKQAIRGENSRHEERVKGWDSIWELDVPRKVKLFLWKATNDFLATKKNLFLKKITG 1056

Query: 122  RNCCTLCGMLNETNLHVIKDCKYA 146
               C +C +  ET +HV+  C  A
Sbjct: 1057 NPLCPICKLDEETIMHVVWQCPAA 1080

BLAST of Sed0007969 vs. NCBI nr
Match: XP_035546588.1 (uncharacterized protein LOC118348634 [Juglans regia])

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-21
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 0

Query: 2    KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 61
            +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W  +  G+FSV+SAYH
Sbjct: 937  RVCELMQGRGEWNTLLIRNIFNKEEADQICSIPVSSMEVEDRLVWGPSKKGIFSVRSAYH 996

Query: 62   LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 121
            L M+  +      S +    K W+S W+++   K+KL  W    + + T+ N+  K I  
Sbjct: 997  LEMERKQAIRGENSRHEERVKGWDSIWELDVPRKVKLFLWKATNDFLATKKNLFLKKITG 1056

Query: 122  RNCCTLCGMLNETNLHVIKDCKYA 146
               C +C +  ET +HV+  C  A
Sbjct: 1057 NPLCPICKLDEETIMHVVWQCPAA 1080

BLAST of Sed0007969 vs. NCBI nr
Match: XP_035544636.1 (uncharacterized protein LOC118348020 [Juglans regia])

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-21
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 0

Query: 3   VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 62
           V  ++ EG K W+   IK+I S+EEAD I  IPL   D  D +IW  +  G+FSVKSAYH
Sbjct: 735 VKDLMFEGRKVWNEGFIKSIFSEEEADLIISIPLSKRDVDDRMIWGPSKKGIFSVKSAYH 794

Query: 63  LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 122
           L    SRV +  +S+ +   KLW S W++      K   W    N++ TR N++SK I  
Sbjct: 795 LEESRSRVSKGESSEQNGLGKLWKSIWRLNIPGSTKNFLWKAGNNLLATRKNLRSKRIVE 854

Query: 123 RNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII 156
            + C +C    ET +HV+  C  A ++   G +I
Sbjct: 855 DSRCPICLQEEETVMHVLWQCP-AANDVWSGSVI 887

BLAST of Sed0007969 vs. NCBI nr
Match: XP_023902041.1 (uncharacterized protein LOC112013897 [Quercus suber])

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-21
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 0

Query: 4   ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLA 63
           A I  E  +W  ++++A+    EA  I  IPL      D+IIW  N  G FSVKSAY++A
Sbjct: 549 ALIDRERKRWRDDVVRALFLPFEARTILSIPLSHNFPEDQIIWVGNRKGEFSVKSAYYIA 608

Query: 64  ---MDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGID 123
              +D   VGE+S+ D+   + LW   W +   PK+++ AW +  N +PT  N+Q KG++
Sbjct: 609 VGVIDNMEVGESSSGDS--RSLLWRKLWHLNIPPKVRIFAWKMCMNALPTFLNLQRKGVN 668

Query: 124 IRNCCTLCGMLNETNLHVIKDCKYA 146
           I + C  CGM  E+N+HV   C+ A
Sbjct: 669 ICDVCPACGMEPESNIHVFVKCEVA 691

BLAST of Sed0007969 vs. NCBI nr
Match: EEC72938.1 (hypothetical protein OsI_06800 [Oryza sativa Indica Group])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 3   VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHL 62
           V+ +I +   WDT+ I       +A+AI  I L S    D I W+ +  G FSV+SAYHL
Sbjct: 367 VSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDRLGRFSVRSAYHL 426

Query: 63  AMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDIR 122
           A+ L++V E S+S  + +++ WN+ WK  A  K+K+ AW  + N +PT  N + + +++ 
Sbjct: 427 AIALAQVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVS 486

Query: 123 NCCTLCGMLNETNLHVIKDCKYA 146
           + CT+CG+ +E  +H +  C +A
Sbjct: 487 DICTICGVESEYVVHALFRCPHA 509

BLAST of Sed0007969 vs. ExPASy TrEMBL
Match: A0A6P9EAZ3 (uncharacterized protein LOC118347987 OS=Juglans regia OX=51240 GN=LOC118347987 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 0

Query: 2    KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 61
            +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W+ +  G+FSV+SAYH
Sbjct: 937  RVCELMQGRGEWNTLLIRNIFNKEEADQICSIPISSMEVEDRLVWSPSKKGIFSVRSAYH 996

Query: 62   LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 121
            L M+  +      S +    K W+S W+++   K+KL  W    + + T+ N+  K I  
Sbjct: 997  LEMERKQAIRGENSRHEERVKGWDSIWELDVPRKVKLFLWKATNDFLATKKNLFLKKITG 1056

Query: 122  RNCCTLCGMLNETNLHVIKDCKYA 146
               C +C +  ET +HV+  C  A
Sbjct: 1057 NPLCPICKLDEETIMHVVWQCPAA 1080

BLAST of Sed0007969 vs. ExPASy TrEMBL
Match: A0A6P9EBC5 (uncharacterized protein LOC118348020 OS=Juglans regia OX=51240 GN=LOC118348020 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 0

Query: 3   VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 62
           V  ++ EG K W+   IK+I S+EEAD I  IPL   D  D +IW  +  G+FSVKSAYH
Sbjct: 735 VKDLMFEGRKVWNEGFIKSIFSEEEADLIISIPLSKRDVDDRMIWGPSKKGIFSVKSAYH 794

Query: 63  LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 122
           L    SRV +  +S+ +   KLW S W++      K   W    N++ TR N++SK I  
Sbjct: 795 LEESRSRVSKGESSEQNGLGKLWKSIWRLNIPGSTKNFLWKAGNNLLATRKNLRSKRIVE 854

Query: 123 RNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII 156
            + C +C    ET +HV+  C  A ++   G +I
Sbjct: 855 DSRCPICLQEEETVMHVLWQCP-AANDVWSGSVI 887

BLAST of Sed0007969 vs. ExPASy TrEMBL
Match: A0A6P9ERU8 (uncharacterized protein LOC118348634 OS=Juglans regia OX=51240 GN=LOC118348634 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 0

Query: 2    KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYH 61
            +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W  +  G+FSV+SAYH
Sbjct: 937  RVCELMQGRGEWNTLLIRNIFNKEEADQICSIPVSSMEVEDRLVWGPSKKGIFSVRSAYH 996

Query: 62   LAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDI 121
            L M+  +      S +    K W+S W+++   K+KL  W    + + T+ N+  K I  
Sbjct: 997  LEMERKQAIRGENSRHEERVKGWDSIWELDVPRKVKLFLWKATNDFLATKKNLFLKKITG 1056

Query: 122  RNCCTLCGMLNETNLHVIKDCKYA 146
               C +C +  ET +HV+  C  A
Sbjct: 1057 NPLCPICKLDEETIMHVVWQCPAA 1080

BLAST of Sed0007969 vs. ExPASy TrEMBL
Match: B8AFP4 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_06800 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 3   VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHL 62
           V+ +I +   WDT+ I       +A+AI  I L S    D I W+ +  G FSV+SAYHL
Sbjct: 367 VSDLIDQSESWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDRLGRFSVRSAYHL 426

Query: 63  AMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDIR 122
           A+ L++V E S+S  + +++ WN+ WK  A  K+K+ AW  + N +PT  N + + +++ 
Sbjct: 427 AIALAQVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVS 486

Query: 123 NCCTLCGMLNETNLHVIKDCKYA 146
           + CT+CG+ +E  +H +  C +A
Sbjct: 487 DICTICGVESEYVVHALFRCPHA 509

BLAST of Sed0007969 vs. ExPASy TrEMBL
Match: A0A2N9I4S0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46946 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 0

Query: 4   ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLA 63
           A I  +   W+  LI AI    EAD I  IPL      D IIW+   NGV+SV+SAYHL 
Sbjct: 601 ALIFQDTRLWNAPLIDAIFEVSEADTIKSIPLNRRSSTDTIIWSETKNGVYSVRSAYHLL 660

Query: 64  MDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDIRN 123
           M   + GE  +S+NS    LW   W      KIKL  W   KN++PT+ N+  K      
Sbjct: 661 MKAKKGGE--SSNNSQVNNLWKGIWNASVPQKIKLFIWKACKNILPTKLNLFRKKACNSM 720

Query: 124 CCTLCGMLNETNLHVIKDCKYA 146
            C LC    E+ +HV+ DCK+A
Sbjct: 721 SCDLCDNDLESVMHVLVDCKFA 740

BLAST of Sed0007969 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 39/147 (26.53%), Postives = 61/147 (41.50%), Query Frame = 0

Query: 13  WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEA 72
           WD + I     + +   I  I L    + D+IIWN N+ G ++V+S Y L          
Sbjct: 88  WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147

Query: 73  STSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLN 132
           + +    S  L    W +  +PK+K   W  L   + T   + ++G+ I   C  C   N
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHREN 207

Query: 133 ETNLHVIKDCKYAVHECLLGGIILARN 160
           E+  H +  C +A     L    L RN
Sbjct: 208 ESINHALFTCPFATMAWRLSDSSLIRN 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_035544594.15.3e-2134.72uncharacterized protein LOC118347987 [Juglans regia][more]
XP_035546588.19.0e-2134.72uncharacterized protein LOC118348634 [Juglans regia][more]
XP_035544636.19.0e-2138.31uncharacterized protein LOC118348020 [Juglans regia][more]
XP_023902041.19.0e-2138.62uncharacterized protein LOC112013897 [Quercus suber][more]
EEC72938.11.2e-2035.66hypothetical protein OsI_06800 [Oryza sativa Indica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P9EAZ32.6e-2134.72uncharacterized protein LOC118347987 OS=Juglans regia OX=51240 GN=LOC118347987 P... [more]
A0A6P9EBC54.4e-2138.31uncharacterized protein LOC118348020 OS=Juglans regia OX=51240 GN=LOC118348020 P... [more]
A0A6P9ERU84.4e-2134.72uncharacterized protein LOC118348634 OS=Juglans regia OX=51240 GN=LOC118348634 P... [more]
B8AFP45.7e-2135.66Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A2N9I4S05.7e-2140.85Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46946 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09510.12.4e-1126.53Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 54..145
e-value: 2.9E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 4..145
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 4..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007969.1Sed0007969.1mRNA