Sed0007884 (gene) Chayote v1

Overview
NameSed0007884
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease H
LocationLG05: 11993923 .. 11995859 (+)
RNA-Seq ExpressionSed0007884
SyntenySed0007884
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGGTTGGTCTATCAATTTCATTCCTAGGTTTCAAATCATGTGGCGCATTCTATCGCAAGTTGGGCAGTGAAGGAGGAGATTAATTGTTTGTGGGTTGATTCTTACTCTTTTTGGTTGAAAAGCCTTATTGATGTTGATATTGGAGCTTGTATTTCGCTGGGCCTTTACTGTCGTTATTAATGAGATTTTCTTTTCAAAAAAAAAAAAAAGCATCACCAAATTTCAACACCCACTTCTCTAAAAAAATTTACAATTAAAATTAAAAACATATAAAAAAGATTTGGCAAACTTTAATTATATATAATACTCATTATATAGTCACCTGCATGTTCATTCATGCACAAACCTTAATTCATACGTATGTTAATAATTCTTGTTGTATGGTTGCTTTAAAACAAAAATGCAGATGGTCTCAAATTGCTGCACGATTACCGGGAAGAACAGATAATGAAATTAAGAATTTTTGGAATTCAACCGTTAAAAAGATGCTCAAGAATTTTTCCACCATGCTATTGCCTAGCACAAGCTCTACCTCCCCCTCCAGCGACTCAAAATCACATTTTTTGTCGGCCTCTTTTTAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGGTCGGGCCAAATCGTGTTTTTTTTAGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA

mRNA sequence

ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA

Coding sequence (CDS)

ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA

Protein sequence

MSGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLFKAQDQQQPDSIYLPIYGADPKSFVITLDSFSLLSTIHCGPFFPIAAPTFLEDNSFFNLPLLLRVNNTFVTATIKTIIKETNNSNNLIKNINCLPNNNNSKVESINDGVEANFLREEFSFGEWYLEPGGFDERHSFFFPLH
Homology
BLAST of Sed0007884 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 9.6e-29
Identity = 88/282 (31.21%), Postives = 130/282 (46.10%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+K++M  +  A+ A+ + +   WN I KL VPTK+KIF+WR  H  I     L  R +
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKS 121
               P    CG   ES+ H FF+CKRAR+IW  L            ISF  +         
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227

Query: 122  TAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECL 181
              ++   AIT W IWNDRN +  G+ +  V+ K +W+  +L+    A +       +   
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMS------NYSP 1287

Query: 182  ELENVEGASLSYWIPPPPNILKLNVDVKVPSC-GKKLGGGAILRNFLGLCCGAKCVFRAQ 241
              ++     + YW P     LKLN D    +C G     G I+R+       A  +    
Sbjct: 1288 RTQSNHRPVVQYWRPSSSVSLKLNTDA---ACRGASTSFGCIIRDSSCSLVAATSIRVPF 1347

Query: 242  NIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKN 282
             +  L AE   + EGLK A   +   +E+ESDS + +  I+N
Sbjct: 1348 PLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1380

BLAST of Sed0007884 vs. NCBI nr
Match: XP_030502765.1 (uncharacterized protein LOC115717936 [Cannabis sativa])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-28
Identity = 79/305 (25.90%), Postives = 136/305 (44.59%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+++ +    +   A+      WW+   K+K+P KV+IF+W+++H  +     L +RH+
Sbjct: 917  SGYQLAVSLAEQDDTASSSSMEHWWSTFWKVKIPPKVRIFVWKVFHSTLPVAAELYRRHI 976

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
               P+   C    ES++H  F+C RA+ +W+L  + +D   L + +   +L   + V +T
Sbjct: 977  ATSPYCTICNSAEESITHALFSCPRAKTVWDLSPLNIDFNTLRQTASADILLHLSTVLTT 1036

Query: 122  AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
            +E E   +  W  W++RN +  G S+ S      +   YL E   A  K+          
Sbjct: 1037 SEYEQFLVICWCNWHERNAIYHGNSVRSPQAVAAYAPSYLTEFQSARAKRSQPTTSSVAA 1096

Query: 182  LENVEGASLSY---WIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRA 241
             +    +  ++   W  PP   LKLN +  +     K+G GA LRN  G    A      
Sbjct: 1097 TDPRPSSEFTHAPKWTAPPRGRLKLNTNAAIDRARNKVGIGATLRNADGFVVAAVSKPLL 1156

Query: 242  QNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYS 301
             N      EA  L   L    + +++   IE+DS ++V  + + +   S F   L  I  
Sbjct: 1157 GNYKAEEMEALGLALSLNWLISNNLSIDFIETDSLLVVQGLLSSQSFLSAFHAILNNITF 1216

Query: 302  LLKLF 304
            L+  F
Sbjct: 1217 LVSFF 1221

BLAST of Sed0007884 vs. NCBI nr
Match: XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-27
Identity = 81/282 (28.72%), Postives = 130/282 (46.10%), Query Frame = 0

Query: 25   WWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNC 84
            WW    KL++P K+KIF WR++H  +     L +RH+        C +  ES+ H  F C
Sbjct: 997  WWKYFWKLQLPQKIKIFAWRVFHDALPVATSLVRRHIITDSTCSVCRQAWESIGHALFGC 1056

Query: 85   KRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCG 144
            K A+ +W       D     +++    L   + + S  E+E+I   LW+IW +RN++  G
Sbjct: 1057 KYAKAVWRATGFHFDWNAAVQMNKGDYLVYLSTIHSKLEMESIICILWSIWTERNRIIHG 1116

Query: 145  ESIPSVDIKVQWIWGYLEELHCAVLK-KPLNGVDECLELENVEGASL--SYWIPPPPNIL 204
            +   S  +   +   YL   H A  K +P     E    +N   A +  S W PP P  L
Sbjct: 1117 KKAKSTVLLASFATNYLSNYHHAQAKYRP----PEATANQNPPPAPVPDSPWRPPDPGSL 1176

Query: 205  KLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNM 264
            K+NVD  + +   ++G GA++RN  G    A       N      EA A+F  L  A  +
Sbjct: 1177 KMNVDAAINASTNQMGIGAVIRNCQGAVIAAFSKPLLGNFASHEIEAKAVFHSLLWASQL 1236

Query: 265  SVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLF 304
             +   +IE+D+ ++ +A+  R    S F   + ++  LL  F
Sbjct: 1237 ELQLGQIETDAMMVTNALYGRSNCISTFHDLINDVSCLLSFF 1274

BLAST of Sed0007884 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-27
Identity = 81/302 (26.82%), Postives = 132/302 (43.71%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+ +      +   ++   +  WW     L++P K+KIF WR+ H  +     L +R V
Sbjct: 781  SGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAWRVIHDALPVATSLVKRKV 840

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
                    C +  ES+ H FF C  A+ +W L++   D K    +     L   A   + 
Sbjct: 841  ITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKGDYLKFLASSHTK 900

Query: 122  AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
            AE E I  TLW IW++RN+V   +   S      +   YL+    A LK          +
Sbjct: 901  AEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATSS--Q 960

Query: 182  LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
            + +   A  + W PPP   LKLN+D        K+G GA++RN++G    A  +    N 
Sbjct: 961  VPSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNF 1020

Query: 242  DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
                 EA A+F G+       ++   +E+D+ ++ +A+K+       F   + +I  LL 
Sbjct: 1021 ASHEMEAKAMFHGINWVLQQQLSISIVETDALLVSNALKSPAAGILAFSDLIMDISYLLS 1080

Query: 302  LF 304
             F
Sbjct: 1081 FF 1080

BLAST of Sed0007884 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-27
Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = 0

Query: 25   WWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNC 84
            WW+   KLK+P KV+IF+W+++H  +     L +RH+   P+   C    E++ H  F+C
Sbjct: 1051 WWSNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTICNSCEETVHHALFSC 1110

Query: 85   KRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCG 144
             RA+ +W L N  +D + + + S    L   +   S++E+E   +  W+IW++RN +  G
Sbjct: 1111 PRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHERNAIYHG 1170

Query: 145  ESIPSVDIKVQWIWGYLEELHCAVLK--KPLNGVDECL-ELENVEGASLSYWIPPPPNIL 204
             S+ +      +   YL E   A  K  KP+           + E      W  PP   L
Sbjct: 1171 NSVRTPAAVAAYAPSYLTEFQQARAKNAKPVTASGAATPSRPSSEFIHAPKWTTPPRGRL 1230

Query: 205  KLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNM 264
            KLN D  +      +G GA+LRN  G+   A       N      EA  L   L    + 
Sbjct: 1231 KLNTDAAIDKERNTIGIGAVLRNSDGIIVAALSKPFRGNFKAEEMEALGLALSLNWLLSH 1290

Query: 265  SVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLF 304
            +++   IE+DS ++V  +K      S F   L  I  L+  F
Sbjct: 1291 NLSVDFIETDSLLVVQGLKTSHSFLSAFHALLNNINYLVSFF 1332

BLAST of Sed0007884 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-12
Identity = 67/269 (24.91%), Postives = 115/269 (42.75%), Query Frame = 0

Query: 19  RDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLS 78
           R     ++N + K++VP +VK FLW + +  ++      +RH++       C    ES+ 
Sbjct: 281 RPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESML 340

Query: 79  HTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKSTAEI---ETIAITLWAI 138
           H   +C     IW  ++         SK  F ++ D+        +I      A+ +W  
Sbjct: 341 HVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWG 400

Query: 139 WNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGASLSYWI 198
           W  R     GE+    D +V+++  +  E++ A     L G+ +   +E + G     W+
Sbjct: 401 WKWRCGNIFGENTKCRD-RVKFVKEWAVEVYRAHSGNVLVGITQ-PRVERMIG-----WV 460

Query: 199 PPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLS---AEAWAL 258
            P    +K+N D            G +LR+    C GA C   + NI   S   AE W +
Sbjct: 461 SPCVGWVKVNTDGASRGNPGLASAGGVLRD----CTGAWCGGFSLNIGRCSAPQAELWGV 520

Query: 259 FEGLKLACNMSVATIEIESDSKVLVDAIK 281
           + GL  A    V  +E+E DS+V+V  +K
Sbjct: 521 YYGLYFAWEKKVPRVELEVDSEVIVGFLK 538

BLAST of Sed0007884 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.6e-29
Identity = 88/282 (31.21%), Postives = 130/282 (46.10%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+K++M  +  A+ A+ + +   WN I KL VPTK+KIF+WR  H  I     L  R +
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKS 121
               P    CG   ES+ H FF+CKRAR+IW  L            ISF  +         
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227

Query: 122  TAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECL 181
              ++   AIT W IWNDRN +  G+ +  V+ K +W+  +L+    A +       +   
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMS------NYSP 1287

Query: 182  ELENVEGASLSYWIPPPPNILKLNVDVKVPSC-GKKLGGGAILRNFLGLCCGAKCVFRAQ 241
              ++     + YW P     LKLN D    +C G     G I+R+       A  +    
Sbjct: 1288 RTQSNHRPVVQYWRPSSSVSLKLNTDA---ACRGASTSFGCIIRDSSCSLVAATSIRVPF 1347

Query: 242  NIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKN 282
             +  L AE   + EGLK A   +   +E+ESDS + +  I+N
Sbjct: 1348 PLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1380

BLAST of Sed0007884 vs. ExPASy TrEMBL
Match: A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-29
Identity = 88/302 (29.14%), Postives = 132/302 (43.71%), Query Frame = 0

Query: 2   SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
           SG+ +      +   A+ +    WW     L +P+K+KIFLWR  H  +    IL  RH+
Sbjct: 494 SGYTLATRLEEQLPAASSNNSLQWWKKFWSLTLPSKIKIFLWRAMHDCLPVADILHHRHI 553

Query: 62  NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
           +       C +  ES +H  F CKR R+IW L +  +   +   +S   VL + +++ S+
Sbjct: 554 SDSAICTLCHQAIESTTHALFWCKRPRKIWQLSSFSISDFVTHNMSLMDVLQNMSQIWSS 613

Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
            +IE  A  LW+IWN+RNK   G      ++ + +   Y+EE   A L       D    
Sbjct: 614 KQIEQFACILWSIWNERNKERHGSKTKPPEMTLFFAMDYIEEFQSARLNTSF--ADSATH 673

Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
                      W+ PP   LKLN D  V +     G GAILRN  G    A  +      
Sbjct: 674 ATTRSQQQELPWMNPPSGRLKLNTDAAVNAVENTSGFGAILRNDTGDIIAAMAMPFKGCF 733

Query: 242 DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
                EA AL   L+   +  +    IE+DS ++V  ++  + H S F   L  I  L+ 
Sbjct: 734 KPEIMEALALIYSLQWLKDSQLPVHFIETDSLLVVKGLQATQRHISDFHCLLNNISLLVS 793

Query: 302 LF 304
            F
Sbjct: 794 NF 793

BLAST of Sed0007884 vs. ExPASy TrEMBL
Match: A0A803P5E3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-28
Identity = 86/307 (28.01%), Postives = 147/307 (47.88%), Query Frame = 0

Query: 2   SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
           SG+K+ +    +    +      WW     L +P+KV+IFLWR     +     L  RH+
Sbjct: 33  SGYKMALLLEEQQLNTSNTTAVTWWKKFWSLSIPSKVRIFLWRTIQVCLPVLDTLHTRHI 92

Query: 62  NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
           +       C ++ +++ H  F+CKR R+ W L N  +D+ + + +S   ++   + + ST
Sbjct: 93  SDTSLCSLCHREKDTIIHALFHCKRPRKFWKLSNFSIDSLLSTHVSLKELMIHVSTIWST 152

Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
            ++E  A  LW++W  RNK   G     +++ +     YLEE H A + K L    +   
Sbjct: 153 LQLEQFACILWSLWTKRNKERHGTKPHLIELLLFKAISYLEEFHSACMPKGLAITHQQAG 212

Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKC-----VF 241
           L++ + +    W+ PP   LKLN +  V    +  G GAIL+N  G C  A        F
Sbjct: 213 LQSNQPS--PKWLNPPSGRLKLNTNASVNKAKQIYGFGAILQNSSGDCIAAMSRPFPDCF 272

Query: 242 RAQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEI 301
           + + I+VL     AL   L+   ++ +    IESDS V+++ ++++    S F   L +I
Sbjct: 273 KPEIIEVL-----ALIHILQWIKDLQLPVDYIESDSLVVINGLQSQHASFSDFHCLLIDI 330

Query: 302 YSLLKLF 304
             LL +F
Sbjct: 333 --LLSVF 330

BLAST of Sed0007884 vs. ExPASy TrEMBL
Match: A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27
Identity = 81/306 (26.47%), Postives = 137/306 (44.77%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+++ +    +   A+      WW+   K+K+P KV+IF+W+++H  +     L +RH+
Sbjct: 1386 SGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHI 1445

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
               P    C    ES++H  F+C RA+ +W L ++ +D   L + +   +L   +   ST
Sbjct: 1446 ATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADILLHLSTALST 1505

Query: 122  AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKK----PLNGVD 181
            +E E   +  W  W++RN +  G ++ S      +   YL E   A  K+    P++ + 
Sbjct: 1506 SEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPTPIS-IA 1565

Query: 182  ECLELENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFR 241
                  + E      W  PP   LKLN D  +     K+G GA LRN  G    A     
Sbjct: 1566 ATDPRPSSEFTHAPKWTAPPQGRLKLNTDAAIDKARNKVGIGATLRNSDGFIVAAISKPL 1625

Query: 242  AQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIY 301
              N      EA  L   L    + +++   IE+DS ++V  + + + + S F   L  I 
Sbjct: 1626 LGNYKAEEMEAIGLALSLNWLISNNLSVDFIETDSLLVVQGLLSSQSYLSAFHAILNNIN 1685

Query: 302  SLLKLF 304
             L+  F
Sbjct: 1686 FLVSFF 1690

BLAST of Sed0007884 vs. ExPASy TrEMBL
Match: A0A803P623 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27
Identity = 81/302 (26.82%), Postives = 132/302 (43.71%), Query Frame = 0

Query: 2    SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
            SG+ +      +   ++   +  WW     L++P K+KIF WR+ H  +     L +R V
Sbjct: 1113 SGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAWRVIHDALPVATSLVKRKV 1172

Query: 62   NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
                    C +  ES+ H FF C  A+ +W L++   D K    +     L   A   + 
Sbjct: 1173 ITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKGDYLKFLASSHTK 1232

Query: 122  AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
            AE E I  TLW IW++RN+V   +   S      +   YL+    A LK          +
Sbjct: 1233 AEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATSS--Q 1292

Query: 182  LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
            + +   A  + W PPP   LKLN+D        K+G GA++RN++G    A  +    N 
Sbjct: 1293 VPSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNF 1352

Query: 242  DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
                 EA A+F G+       ++   +E+D+ ++ +A+K+       F   + +I  LL 
Sbjct: 1353 ASHEMEAKAMFHGINWVLQQQLSISIVETDALLVSNALKSPAAGILAFSDLIMDISYLLS 1412

Query: 302  LF 304
             F
Sbjct: 1413 FF 1412

BLAST of Sed0007884 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09
Identity = 66/292 (22.60%), Postives = 115/292 (39.38%), Query Frame = 0

Query: 37  KVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNI 96
           K+K+FLW+   G +     L +RH++       CG   E+ +H  F+C  A ++WNL  +
Sbjct: 3   KIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAP-ETSTHMLFHCDFAAQVWNLAPL 62

Query: 97  GVDAKILSKISFPFVLDDFARVKSTAEIETIAI--------TLWAIWNDRNKVNCGESIP 156
            +       I  P +L+    +K T  +  + I          W IW  RN++       
Sbjct: 63  QLGH---IPIGTP-ILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQL------- 122

Query: 157 SVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGA--SLSYWIPPPPNILKLN-- 216
                        +  H +V++     V + L  ++ + A   +    P P +   L   
Sbjct: 123 -----------IFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHD 182

Query: 217 ----VDVKVPSCGKKLGGGAIL-------RNFLGLCCGAKCVFRAQNIDVLSAEAWALFE 276
               VD          G G +        +       G +     +    L+AEAWA+  
Sbjct: 183 FLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCR-----RFPSPLAAEAWAIKS 242

Query: 277 GLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLFKA 306
            +  A  +  + + + SDSK +VDA+ +    N IFG+ L EI S+   F++
Sbjct: 243 AMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEIFGL-LVEIRSIRNRFRS 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.19.6e-2931.21uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030502765.11.3e-2825.90uncharacterized protein LOC115717936 [Cannabis sativa][more]
XP_030483481.12.4e-2728.72uncharacterized protein LOC115700065 [Cannabis sativa][more]
XP_030495196.13.1e-2726.82uncharacterized protein LOC115710989 [Cannabis sativa][more]
XP_030508852.13.1e-2728.37uncharacterized protein LOC115723496 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
P0C2F62.2e-1224.91Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6J1DX304.6e-2931.21uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803P9P56.1e-2929.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P5E31.0e-2828.01Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q2K81.5e-2726.47Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P6231.5e-2726.82Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G10000.11.1e-0922.60Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 204..304
e-value: 1.5E-14
score: 53.8
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 19..91
e-value: 1.2E-13
score: 51.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 201..314
e-value: 1.9E-5
score: 26.7
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 190..293
NoneNo IPR availablePANTHERPTHR47074:SF17PUTATIVE-RELATEDcoord: 190..293
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 203..303
e-value: 5.58406E-16
score: 71.9616
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 244..303

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007884.1Sed0007884.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity