Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGGTTGGTCTATCAATTTCATTCCTAGGTTTCAAATCATGTGGCGCATTCTATCGCAAGTTGGGCAGTGAAGGAGGAGATTAATTGTTTGTGGGTTGATTCTTACTCTTTTTGGTTGAAAAGCCTTATTGATGTTGATATTGGAGCTTGTATTTCGCTGGGCCTTTACTGTCGTTATTAATGAGATTTTCTTTTCAAAAAAAAAAAAAAGCATCACCAAATTTCAACACCCACTTCTCTAAAAAAATTTACAATTAAAATTAAAAACATATAAAAAAGATTTGGCAAACTTTAATTATATATAATACTCATTATATAGTCACCTGCATGTTCATTCATGCACAAACCTTAATTCATACGTATGTTAATAATTCTTGTTGTATGGTTGCTTTAAAACAAAAATGCAGATGGTCTCAAATTGCTGCACGATTACCGGGAAGAACAGATAATGAAATTAAGAATTTTTGGAATTCAACCGTTAAAAAGATGCTCAAGAATTTTTCCACCATGCTATTGCCTAGCACAAGCTCTACCTCCCCCTCCAGCGACTCAAAATCACATTTTTTGTCGGCCTCTTTTTAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGGTCGGGCCAAATCGTGTTTTTTTTAGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA
mRNA sequence
ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA
Coding sequence (CDS)
ATGAGTGGTCATAAGGTGTTTATGGACAGAAGAGTTGAAGCTTCTGGAGCAAATAGAGATGAAAAGTGTCTTTGGTGGAATATTATTTGCAAGCTTAAAGTGCCTACTAAGGTGAAAATTTTCCTTTGGAGATTGTATCATGGTTTTATTCTAGCCAATTTTATTCTCCAGCAGAGACATGTTAATGTGCAGCCATGGTCTGTGCATTGTGGTAAAGACCATGAATCTTTAAGTCATACCTTTTTCAATTGCAAGAGAGCTAGGAGAATCTGGAATCTGTTGAATATTGGAGTTGATGCTAAAATCCTTTCAAAGATTAGTTTCCCCTTTGTTCTTGATGATTTCGCTCGTGTGAAATCCACTGCAGAGATTGAAACTATTGCGATTACTTTATGGGCAATTTGGAATGACAGAAACAAGGTTAATTGTGGAGAATCGATTCCATCTGTTGATATTAAAGTCCAATGGATTTGGGGTTACCTGGAGGAATTGCATTGTGCAGTTTTGAAGAAGCCTCTTAATGGTGTAGATGAATGTCTAGAGCTCGAAAATGTTGAGGGAGCTTCTTTATCCTATTGGATCCCTCCTCCCCCAAATATTTTGAAGCTTAATGTTGATGTTAAGGTGCCAAGTTGTGGTAAGAAGCTCGGAGGTGGGGCTATTTTGCGGAACTTTCTGGGTTTATGTTGTGGAGCTAAGTGTGTGTTTCGTGCCCAAAATATTGATGTTTTATCTGCTGAAGCTTGGGCTTTGTTTGAAGGTCTAAAGTTAGCCTGCAATATGAGTGTTGCTACCATTGAAATCGAATCCGATTCAAAGGTTTTGGTGGATGCTATAAAGAATAGAAAGTTGCATAACTCTATTTTTGGAGTTTTCTTGGAGGAAATTTATTCTTTGTTGAAGCTTTTTAAAGCTCAAGATCAACAACAACCAGACTCAATTTACTTACCCATCTATGGCGCCGATCCAAAGTCTTTTGTTATCACCCTCGATTCCTTCTCACTCCTTTCCACCATCCACTGTGGACCATTCTTCCCCATTGCAGCCCCAACCTTCCTCGAAGATAATAGCTTCTTCAATCTCCCTCTATTGCTGAGGGTTAACAATACCTTCGTCACTGCCACGATCAAAACAATAATTAAAGAAACTAACAATAGTAATAACTTAATTAAAAACATCAACTGCCTCCCTAATAATAACAATTCAAAGGTTGAGAGCATCAATGATGGGGTTGAAGCAAATTTTCTTCGTGAGGAGTTTTCATTTGGTGAATGGTACTTGGAGCCTGGAGGATTTGATGAAAGACATTCCTTCTTCTTTCCCCTGCATTAA
Protein sequence
MSGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLFKAQDQQQPDSIYLPIYGADPKSFVITLDSFSLLSTIHCGPFFPIAAPTFLEDNSFFNLPLLLRVNNTFVTATIKTIIKETNNSNNLIKNINCLPNNNNSKVESINDGVEANFLREEFSFGEWYLEPGGFDERHSFFFPLH
Homology
BLAST of Sed0007884 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 139.0 bits (349), Expect = 9.6e-29
Identity = 88/282 (31.21%), Postives = 130/282 (46.10%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+K++M + A+ A+ + + WN I KL VPTK+KIF+WR H I L R +
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKS 121
P CG ES+ H FF+CKRAR+IW L ISF +
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227
Query: 122 TAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECL 181
++ AIT W IWNDRN + G+ + V+ K +W+ +L+ A + +
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMS------NYSP 1287
Query: 182 ELENVEGASLSYWIPPPPNILKLNVDVKVPSC-GKKLGGGAILRNFLGLCCGAKCVFRAQ 241
++ + YW P LKLN D +C G G I+R+ A +
Sbjct: 1288 RTQSNHRPVVQYWRPSSSVSLKLNTDA---ACRGASTSFGCIIRDSSCSLVAATSIRVPF 1347
Query: 242 NIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKN 282
+ L AE + EGLK A + +E+ESDS + + I+N
Sbjct: 1348 PLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1380
BLAST of Sed0007884 vs. NCBI nr
Match:
XP_030502765.1 (uncharacterized protein LOC115717936 [Cannabis sativa])
HSP 1 Score: 138.7 bits (348), Expect = 1.3e-28
Identity = 79/305 (25.90%), Postives = 136/305 (44.59%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+++ + + A+ WW+ K+K+P KV+IF+W+++H + L +RH+
Sbjct: 917 SGYQLAVSLAEQDDTASSSSMEHWWSTFWKVKIPPKVRIFVWKVFHSTLPVAAELYRRHI 976
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
P+ C ES++H F+C RA+ +W+L + +D L + + +L + V +T
Sbjct: 977 ATSPYCTICNSAEESITHALFSCPRAKTVWDLSPLNIDFNTLRQTASADILLHLSTVLTT 1036
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
+E E + W W++RN + G S+ S + YL E A K+
Sbjct: 1037 SEYEQFLVICWCNWHERNAIYHGNSVRSPQAVAAYAPSYLTEFQSARAKRSQPTTSSVAA 1096
Query: 182 LENVEGASLSY---WIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRA 241
+ + ++ W PP LKLN + + K+G GA LRN G A
Sbjct: 1097 TDPRPSSEFTHAPKWTAPPRGRLKLNTNAAIDRARNKVGIGATLRNADGFVVAAVSKPLL 1156
Query: 242 QNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYS 301
N EA L L + +++ IE+DS ++V + + + S F L I
Sbjct: 1157 GNYKAEEMEALGLALSLNWLISNNLSIDFIETDSLLVVQGLLSSQSFLSAFHAILNNITF 1216
Query: 302 LLKLF 304
L+ F
Sbjct: 1217 LVSFF 1221
BLAST of Sed0007884 vs. NCBI nr
Match:
XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])
HSP 1 Score: 134.4 bits (337), Expect = 2.4e-27
Identity = 81/282 (28.72%), Postives = 130/282 (46.10%), Query Frame = 0
Query: 25 WWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNC 84
WW KL++P K+KIF WR++H + L +RH+ C + ES+ H F C
Sbjct: 997 WWKYFWKLQLPQKIKIFAWRVFHDALPVATSLVRRHIITDSTCSVCRQAWESIGHALFGC 1056
Query: 85 KRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCG 144
K A+ +W D +++ L + + S E+E+I LW+IW +RN++ G
Sbjct: 1057 KYAKAVWRATGFHFDWNAAVQMNKGDYLVYLSTIHSKLEMESIICILWSIWTERNRIIHG 1116
Query: 145 ESIPSVDIKVQWIWGYLEELHCAVLK-KPLNGVDECLELENVEGASL--SYWIPPPPNIL 204
+ S + + YL H A K +P E +N A + S W PP P L
Sbjct: 1117 KKAKSTVLLASFATNYLSNYHHAQAKYRP----PEATANQNPPPAPVPDSPWRPPDPGSL 1176
Query: 205 KLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNM 264
K+NVD + + ++G GA++RN G A N EA A+F L A +
Sbjct: 1177 KMNVDAAINASTNQMGIGAVIRNCQGAVIAAFSKPLLGNFASHEIEAKAVFHSLLWASQL 1236
Query: 265 SVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLF 304
+ +IE+D+ ++ +A+ R S F + ++ LL F
Sbjct: 1237 ELQLGQIETDAMMVTNALYGRSNCISTFHDLINDVSCLLSFF 1274
BLAST of Sed0007884 vs. NCBI nr
Match:
XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])
HSP 1 Score: 134.0 bits (336), Expect = 3.1e-27
Identity = 81/302 (26.82%), Postives = 132/302 (43.71%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+ + + ++ + WW L++P K+KIF WR+ H + L +R V
Sbjct: 781 SGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAWRVIHDALPVATSLVKRKV 840
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
C + ES+ H FF C A+ +W L++ D K + L A +
Sbjct: 841 ITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKGDYLKFLASSHTK 900
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
AE E I TLW IW++RN+V + S + YL+ A LK +
Sbjct: 901 AEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATSS--Q 960
Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
+ + A + W PPP LKLN+D K+G GA++RN++G A + N
Sbjct: 961 VPSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNF 1020
Query: 242 DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
EA A+F G+ ++ +E+D+ ++ +A+K+ F + +I LL
Sbjct: 1021 ASHEMEAKAMFHGINWVLQQQLSISIVETDALLVSNALKSPAAGILAFSDLIMDISYLLS 1080
Query: 302 LF 304
F
Sbjct: 1081 FF 1080
BLAST of Sed0007884 vs. NCBI nr
Match:
XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])
HSP 1 Score: 134.0 bits (336), Expect = 3.1e-27
Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = 0
Query: 25 WWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNC 84
WW+ KLK+P KV+IF+W+++H + L +RH+ P+ C E++ H F+C
Sbjct: 1051 WWSNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTICNSCEETVHHALFSC 1110
Query: 85 KRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKSTAEIETIAITLWAIWNDRNKVNCG 144
RA+ +W L N +D + + + S L + S++E+E + W+IW++RN + G
Sbjct: 1111 PRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHERNAIYHG 1170
Query: 145 ESIPSVDIKVQWIWGYLEELHCAVLK--KPLNGVDECL-ELENVEGASLSYWIPPPPNIL 204
S+ + + YL E A K KP+ + E W PP L
Sbjct: 1171 NSVRTPAAVAAYAPSYLTEFQQARAKNAKPVTASGAATPSRPSSEFIHAPKWTTPPRGRL 1230
Query: 205 KLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLSAEAWALFEGLKLACNM 264
KLN D + +G GA+LRN G+ A N EA L L +
Sbjct: 1231 KLNTDAAIDKERNTIGIGAVLRNSDGIIVAALSKPFRGNFKAEEMEALGLALSLNWLLSH 1290
Query: 265 SVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLF 304
+++ IE+DS ++V +K S F L I L+ F
Sbjct: 1291 NLSVDFIETDSLLVVQGLKTSHSFLSAFHALLNNINYLVSFF 1332
BLAST of Sed0007884 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 2.2e-12
Identity = 67/269 (24.91%), Postives = 115/269 (42.75%), Query Frame = 0
Query: 19 RDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLS 78
R ++N + K++VP +VK FLW + + ++ +RH++ C ES+
Sbjct: 281 RPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESML 340
Query: 79 HTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKSTAEI---ETIAITLWAI 138
H +C IW ++ SK F ++ D+ +I A+ +W
Sbjct: 341 HVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWG 400
Query: 139 WNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGASLSYWI 198
W R GE+ D +V+++ + E++ A L G+ + +E + G W+
Sbjct: 401 WKWRCGNIFGENTKCRD-RVKFVKEWAVEVYRAHSGNVLVGITQ-PRVERMIG-----WV 460
Query: 199 PPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNIDVLS---AEAWAL 258
P +K+N D G +LR+ C GA C + NI S AE W +
Sbjct: 461 SPCVGWVKVNTDGASRGNPGLASAGGVLRD----CTGAWCGGFSLNIGRCSAPQAELWGV 520
Query: 259 FEGLKLACNMSVATIEIESDSKVLVDAIK 281
+ GL A V +E+E DS+V+V +K
Sbjct: 521 YYGLYFAWEKKVPRVELEVDSEVIVGFLK 538
BLAST of Sed0007884 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 4.6e-29
Identity = 88/282 (31.21%), Postives = 130/282 (46.10%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+K++M + A+ A+ + + WN I KL VPTK+KIF+WR H I L R +
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIW-NLLNIGVDAKILSKISFPFVLDDFARVKS 121
P CG ES+ H FF+CKRAR+IW L ISF +
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227
Query: 122 TAEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECL 181
++ AIT W IWNDRN + G+ + V+ K +W+ +L+ A + +
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMS------NYSP 1287
Query: 182 ELENVEGASLSYWIPPPPNILKLNVDVKVPSC-GKKLGGGAILRNFLGLCCGAKCVFRAQ 241
++ + YW P LKLN D +C G G I+R+ A +
Sbjct: 1288 RTQSNHRPVVQYWRPSSSVSLKLNTDA---ACRGASTSFGCIIRDSSCSLVAATSIRVPF 1347
Query: 242 NIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKN 282
+ L AE + EGLK A + +E+ESDS + + I+N
Sbjct: 1348 PLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1380
BLAST of Sed0007884 vs. ExPASy TrEMBL
Match:
A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 6.1e-29
Identity = 88/302 (29.14%), Postives = 132/302 (43.71%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+ + + A+ + WW L +P+K+KIFLWR H + IL RH+
Sbjct: 494 SGYTLATRLEEQLPAASSNNSLQWWKKFWSLTLPSKIKIFLWRAMHDCLPVADILHHRHI 553
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
+ C + ES +H F CKR R+IW L + + + +S VL + +++ S+
Sbjct: 554 SDSAICTLCHQAIESTTHALFWCKRPRKIWQLSSFSISDFVTHNMSLMDVLQNMSQIWSS 613
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
+IE A LW+IWN+RNK G ++ + + Y+EE A L D
Sbjct: 614 KQIEQFACILWSIWNERNKERHGSKTKPPEMTLFFAMDYIEEFQSARLNTSF--ADSATH 673
Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
W+ PP LKLN D V + G GAILRN G A +
Sbjct: 674 ATTRSQQQELPWMNPPSGRLKLNTDAAVNAVENTSGFGAILRNDTGDIIAAMAMPFKGCF 733
Query: 242 DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
EA AL L+ + + IE+DS ++V ++ + H S F L I L+
Sbjct: 734 KPEIMEALALIYSLQWLKDSQLPVHFIETDSLLVVKGLQATQRHISDFHCLLNNISLLVS 793
Query: 302 LF 304
F
Sbjct: 794 NF 793
BLAST of Sed0007884 vs. ExPASy TrEMBL
Match:
A0A803P5E3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 1.0e-28
Identity = 86/307 (28.01%), Postives = 147/307 (47.88%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+K+ + + + WW L +P+KV+IFLWR + L RH+
Sbjct: 33 SGYKMALLLEEQQLNTSNTTAVTWWKKFWSLSIPSKVRIFLWRTIQVCLPVLDTLHTRHI 92
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
+ C ++ +++ H F+CKR R+ W L N +D+ + + +S ++ + + ST
Sbjct: 93 SDTSLCSLCHREKDTIIHALFHCKRPRKFWKLSNFSIDSLLSTHVSLKELMIHVSTIWST 152
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
++E A LW++W RNK G +++ + YLEE H A + K L +
Sbjct: 153 LQLEQFACILWSLWTKRNKERHGTKPHLIELLLFKAISYLEEFHSACMPKGLAITHQQAG 212
Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKC-----VF 241
L++ + + W+ PP LKLN + V + G GAIL+N G C A F
Sbjct: 213 LQSNQPS--PKWLNPPSGRLKLNTNASVNKAKQIYGFGAILQNSSGDCIAAMSRPFPDCF 272
Query: 242 RAQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEI 301
+ + I+VL AL L+ ++ + IESDS V+++ ++++ S F L +I
Sbjct: 273 KPEIIEVL-----ALIHILQWIKDLQLPVDYIESDSLVVINGLQSQHASFSDFHCLLIDI 330
Query: 302 YSLLKLF 304
LL +F
Sbjct: 333 --LLSVF 330
BLAST of Sed0007884 vs. ExPASy TrEMBL
Match:
A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27
Identity = 81/306 (26.47%), Postives = 137/306 (44.77%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+++ + + A+ WW+ K+K+P KV+IF+W+++H + L +RH+
Sbjct: 1386 SGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHI 1445
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
P C ES++H F+C RA+ +W L ++ +D L + + +L + ST
Sbjct: 1446 ATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADILLHLSTALST 1505
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKK----PLNGVD 181
+E E + W W++RN + G ++ S + YL E A K+ P++ +
Sbjct: 1506 SEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPTPIS-IA 1565
Query: 182 ECLELENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFR 241
+ E W PP LKLN D + K+G GA LRN G A
Sbjct: 1566 ATDPRPSSEFTHAPKWTAPPQGRLKLNTDAAIDKARNKVGIGATLRNSDGFIVAAISKPL 1625
Query: 242 AQNIDVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIY 301
N EA L L + +++ IE+DS ++V + + + + S F L I
Sbjct: 1626 LGNYKAEEMEAIGLALSLNWLISNNLSVDFIETDSLLVVQGLLSSQSYLSAFHAILNNIN 1685
Query: 302 SLLKLF 304
L+ F
Sbjct: 1686 FLVSFF 1690
BLAST of Sed0007884 vs. ExPASy TrEMBL
Match:
A0A803P623 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27
Identity = 81/302 (26.82%), Postives = 132/302 (43.71%), Query Frame = 0
Query: 2 SGHKVFMDRRVEASGANRDEKCLWWNIICKLKVPTKVKIFLWRLYHGFILANFILQQRHV 61
SG+ + + ++ + WW L++P K+KIF WR+ H + L +R V
Sbjct: 1113 SGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAWRVIHDALPVATSLVKRKV 1172
Query: 62 NVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNIGVDAKILSKISFPFVLDDFARVKST 121
C + ES+ H FF C A+ +W L++ D K + L A +
Sbjct: 1173 ITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKGDYLKFLASSHTK 1232
Query: 122 AEIETIAITLWAIWNDRNKVNCGESIPSVDIKVQWIWGYLEELHCAVLKKPLNGVDECLE 181
AE E I TLW IW++RN+V + S + YL+ A LK +
Sbjct: 1233 AEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATSS--Q 1292
Query: 182 LENVEGASLSYWIPPPPNILKLNVDVKVPSCGKKLGGGAILRNFLGLCCGAKCVFRAQNI 241
+ + A + W PPP LKLN+D K+G GA++RN++G A + N
Sbjct: 1293 VPSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNF 1352
Query: 242 DVLSAEAWALFEGLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLK 301
EA A+F G+ ++ +E+D+ ++ +A+K+ F + +I LL
Sbjct: 1353 ASHEMEAKAMFHGINWVLQQQLSISIVETDALLVSNALKSPAAGILAFSDLIMDISYLLS 1412
Query: 302 LF 304
F
Sbjct: 1413 FF 1412
BLAST of Sed0007884 vs. TAIR 10
Match:
AT1G10000.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09
Identity = 66/292 (22.60%), Postives = 115/292 (39.38%), Query Frame = 0
Query: 37 KVKIFLWRLYHGFILANFILQQRHVNVQPWSVHCGKDHESLSHTFFNCKRARRIWNLLNI 96
K+K+FLW+ G + L +RH++ CG E+ +H F+C A ++WNL +
Sbjct: 3 KIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAP-ETSTHMLFHCDFAAQVWNLAPL 62
Query: 97 GVDAKILSKISFPFVLDDFARVKSTAEIETIAI--------TLWAIWNDRNKVNCGESIP 156
+ I P +L+ +K T + + I W IW RN++
Sbjct: 63 QLGH---IPIGTP-ILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQL------- 122
Query: 157 SVDIKVQWIWGYLEELHCAVLKKPLNGVDECLELENVEGA--SLSYWIPPPPNILKLN-- 216
+ H +V++ V + L ++ + A + P P + L
Sbjct: 123 -----------IFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHD 182
Query: 217 ----VDVKVPSCGKKLGGGAIL-------RNFLGLCCGAKCVFRAQNIDVLSAEAWALFE 276
VD G G + + G + + L+AEAWA+
Sbjct: 183 FLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCR-----RFPSPLAAEAWAIKS 242
Query: 277 GLKLACNMSVATIEIESDSKVLVDAIKNRKLHNSIFGVFLEEIYSLLKLFKA 306
+ A + + + + SDSK +VDA+ + N IFG+ L EI S+ F++
Sbjct: 243 AMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEIFGL-LVEIRSIRNRFRS 265
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 2.2e-12 | 24.91 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DX30 | 4.6e-29 | 31.21 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A803P9P5 | 6.1e-29 | 29.14 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803P5E3 | 1.0e-28 | 28.01 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q2K8 | 1.5e-27 | 26.47 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803P623 | 1.5e-27 | 26.82 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G10000.1 | 1.1e-09 | 22.60 | Ribonuclease H-like superfamily protein | [more] |