Sed0007802 (gene) Chayote v1

Overview


Name	Sed0007802
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein
Location	LG07: 4512641 .. 4517592 (-)
RNA-Seq Expression	Sed0007802
Synteny	Sed0007802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCCACCCCCCAAAATTGATCTCATTTGGTTGTTTTTCACTTCAATTTCTAAACCCCAAATGAACTCTACATTTTCACTTCTACCATTGCCACCAACAGCCCTCTTATCTCTTCCATTTATATCTTCATAAACTACCAGAAAAACTTCTTCTTCTTCCATTGATAGACCTTGAGCTCTTTCTTCCCCAACAACAATGGCAATGGCCACTGTTCACTGTTCCCTTACAATGGCAATGGCCCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGACCCATTTCCACCTCTTTATCCCACCCCTTGATTCTCCAGTGCAGGGGAGGGAGCCCAATCAATTGGGTCGGCCTTAATTTCAGGCGAGAATGTAGGGTTCATTTGGTTGCCGCTGCTTTGGCTGCCGAAATTGAGGCGCCTGAGGCTGTGGAACAGGGGAATGATGGATCGGCTGTTTCGGTTGTGCCTAAGATTAAGAGGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGGTAAGCTTGAGTTTTAATCTCTCTTTTCGTTCTTGTTGACTGGCTTTTTAGATATGGTTTTGGTGTTTCGTTGGTGGGTTTTGCTTCATTTTAGGGGTTTTGCTTTTGTTACTGATTTGGGGTTTTGGTTTTTCAAATTGTTGCCTGTTTGTGGAGATGGAGTATGTCTTGGGACTTCTTTAGTTTTTCTGTCCACTTTCATTGTTTGTTTTTCACTAATTAGACTGGTTTTCTGGGGTTCAATTTTTTTTTTCCCTTTATGTTGTTTGTTCGTTAGTTAAGTTTACAATTATTTTGCTCAAGTGTCGAGACTAGATTAAGCATATAGGTGTACCTCGACTTTTCACACTCACAATTGCTTCACCCTACCACATTTGATTGTCAAGAAAATTGGTAGGAAATTAATTTTGAAGTAATTGGTAGAATGGATTAAACCCATAAATTCTTTTTGTTTATCCGTAAATGTCGAGACTACTTTATGGAGTTATGTGTACCTTGACTATTCTCACCCACAACGGCTTGATCTTATTATATTTGATTGCCAAGAAAATTTTATAAGAAATTAATTTTTAAGTAGGTGGTAAACATGGATTAAACTCATGAACTCTTACTAAGTTACTTCTCGAGCAACCTTTTAACCTCTTGGCCAATTCATGATGGTCGAGTTTATCATTTTTAAGTCAAACCCAGAAGGCCAGAAGTATGTCCTCTCAAGGGTCATGTATGCAATCTCGAGAGATGCATTGTTTCTAAGTGAAATGATTCCTTTAAATGGAACCTTACTTCCGGTAAAGGAACTATAGATTCCATTAGTGGACTGTTCTGTTGTCTCCAACGGGTGGTGCGGTGGGTGAAAACTTGGGTTTTGAAAGTTTGCTCTCTTCAAAGTCCAAGATTCGAGATTCACTTGTGACATTAATTTGTAGCACCTTCCGTGTCTCCATTCATTCCATGTCTCTTGGTGCCTGGCCTAAAGACGGGCGTGGTTATCTTAGTTTCTAAAAAGTGGACTGTTGTGTTTGTTAGCTCTGCCTTTCCAAGTTTCTCTGTGGAAAAATTGTTCATTGGTTCTTTCCCTTATACTGTCAGTCACCATAGGGCTTATGTGTTTATTAGTTTCAGTACTGGCAGTGGAATTTACTTAACTACTGTCCAACCTCTAATTAAATGTTTTCTTGGATTGTTTGTTCTTTCTCTAGTTTATCATCTTCTAGGAGTAATAGCTCTTGTCATGTCTATTTGCAATTACGGCTTCATTTGTCGACTGTGATCCATTGGAGGTTGAAACAAAACTCTAGCAATTGGGTGGTCTTGTTCTGTGTTTTTTTTTTTGTTTTTTTTTTTTGGTTTGCTTATTTGTAGCATCAGCCTTTGCAGCTAGTTATTGGATATGTTTTCTGTTTAATCTTATTTTATTCGAAGTTCTACTTTGAGCCAGACGGTAGATTTAAAGAGAGGTCCATAAACAATATGTGCATTTTTTGTTTGTTTGATGACTGGGAGTCGGTGCTTTCACTCTCCTAATATTCGGGACACCATTGGTCCGTCCCTAAGTTGCAGCACCGGTATATATCGGAGGAGTAGAGACACAATTAGGAAGTGTCTACGAATTATTGTGCATTACTCTTAATTCATATTGTTAGCTGTATTCTAATAGAATATGTATTTTACGTCTTCTCGTATTACTGTTGCGTCAGCTCTAACATGACAGTTATCTCTGAAAACATGCAGACCAGATCAAAGAGGTTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACGAAATTCGTGGAAACTGCTGAAGCACACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAGTTTTCTTGGTAATTGTATGACAATTGATAAATAAAGTTAAAAGTCTAGTCCGCTGATTGATTCTACTATATCTACGTTCTTCATCACCAATGCTCATTTTTCTTATAGGTAAATCTGCCCAAGGGAACTGGCCAGACAGTCAAGGTAGCTGTCCTTACTCAAGGTAATCACTAAATTTAACTTAAAATGATATTTTCATTGGAAGATAACTTATAATATTCAATGGTAGAAGTTACCAGAGTTTTCAACGATTTTTTGTTTTATTTCTTTCACTTGTGATGAACCATTGTTTCCTTATTGAGAGAGCATTGTGGAAAGAATATTAGAACTTGATGCAACTAGTTATAGGAACTTTAAAGGGCAATACTGTCTTCATAGTGTTTGTGATTCTGATAGTATGTGGTGGAGAATCCTCTATTCGAAAGGAGGGTGTGCTTACTTGGTTTAAAATGGCTCTGTTAGTGAAATTGCTTTAACTATCATAGGTCTGTTTATATGCATTTCTCTTTATTATTTTATGAGTGAATCTCCTCCTTGTTAGCCATTACTTGTTCTTGTTTGACCTGTTTGGTACATGGTATTTGAAAAAGGAAAATATTTGTTTGTTCATACAGCTTTGCAGTCATTGGCTAATACTAATAAGTCGGCTTTCCTCCTTGTAATCAGTTTTGCAATAATTTGAGTGGAGAGAATGAGATGAACGCTTGTAGTTATGGCTTTTTAACTCTTCTTGTTTTAATCTTTGTTTGTTTGTTTCTGATATCCATGAGTATCAGGCTCTCGACTATTCTCACGAGACATATCGCCTAATCGTACATCATTTGAGTGTCAAGAAAGCTCGTAGGAAATTAATTTTTAGGTAGGTGACCACCATAGATTAAATCTATAACCTCTTAGATTCTCAAGGCCCTTTTTGACCGTTAGGCCAACCTATGATTGTTTTTATCCGCGGATTCTTTCGATCTATTCCCATCTCGCTAGTCAAATGTGAATGTTGAGATTCAGCTTACTTTGGCCATATGCTGAGTTACTTTTTTAAGTATGCTGTCTGTATCTTTTTCTTCTTCAGTTTTCATTCTCTTTCCCTGAATTCAAATCATCTCATTGCTTTCTGAATCATGTAGGTGAAAAATTCGACGAAGCAAAAAATGCAGGAGCAGATTTGGTGGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGCTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTATGGTTCTTTCATCTTTTTCCTATCATACACTATAGTGGCTTTCCAACGATGAGTATTTCTAATAACAATATCATTTATAAATAGCTATGAGGTATATTTTCCCATTTAATTTGAAAGTATCACCAAACACAATCCTAATTTTCTCCCATGCAATTAATAGTTTTCCCTTCCTTGTAAGAAAATATTCTTGGCTTCCTCTCACACTACTACGACCGAAGCCAAGATACGGTGTTGTGTTCATATAACAGAGTAAAAGAGACTGAATAGAATGAAGCTTAAAGAAATTTTACTGATATGTGCAAATGTTTTGGCCTTCACTTACGAAGTTGGTGCCGATTTTGAGATACCTTAGTTAGTTGTGGAAAAAAATGAACAATTAATTTGTTTACCTGTCTTCTCTGTTTGTACCAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGTATACATTAGATCCATCTACATTTGTATGCATTACAATTTGACAATAGGAGTGTAGATAATACATACATTTATTGCAATTTGATACTTGTAATATTGACTGATTATAGTTTTGTCCTCTTTCAGGCTATAGCAGAATTTAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACTGGGATTGTTCACTTACCCTTTGGAAAGGCGGACTTCTCTGAAGACGACCTCGTTGTAAACTTGCTTGCTGCAGTTGTATGTTCTTTCCCAATCTCAAATTCACACGAACTCCATTCATTTCTAAAATTTACTAGTCTTCATTGTATTGATTCACATTAATCTTAACAGAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATCCGGTTAAACATAAGGGAAGTACTTGATTACAAGATTGCATCATCAAAAGCTTGAGGAATTTTACTCCAAACCTGTAAATGTCCTCTTCAATTTGTTTAATCTCAGCCCTTTTGGATGCAACTTTCGATCGTTTTGAACGGCTGAACGTTTGGTTAAGATTTTAAGAAAGTTGCTATGGTGTCTGAAGTAAGAAGAGAGCTTGTATGATTATCTTGGGATGAAGAGTAGTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTTGGAAACTGCATATTCATTTTCACCTCATCTGATTATTGATTATTTCTCAATTTTTGTTAGTTTATTTTTTGGGACA

mRNA sequence

TGGGCCACCCCCCAAAATTGATCTCATTTGGTTGTTTTTCACTTCAATTTCTAAACCCCAAATGAACTCTACATTTTCACTTCTACCATTGCCACCAACAGCCCTCTTATCTCTTCCATTTATATCTTCATAAACTACCAGAAAAACTTCTTCTTCTTCCATTGATAGACCTTGAGCTCTTTCTTCCCCAACAACAATGGCAATGGCCACTGTTCACTGTTCCCTTACAATGGCAATGGCCCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGACCCATTTCCACCTCTTTATCCCACCCCTTGATTCTCCAGTGCAGGGGAGGGAGCCCAATCAATTGGGTCGGCCTTAATTTCAGGCGAGAATGTAGGGTTCATTTGGTTGCCGCTGCTTTGGCTGCCGAAATTGAGGCGCCTGAGGCTGTGGAACAGGGGAATGATGGATCGGCTGTTTCGGTTGTGCCTAAGATTAAGAGGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGACCAGATCAAAGAGGTTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACGAAATTCGTGGAAACTGCTGAAGCACACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGCCAGACAGTCAAGGTAGCTGTCCTTACTCAAGGTGAAAAATTCGACGAAGCAAAAAATGCAGGAGCAGATTTGGTGGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGCTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAATTTAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACTGGGATTGTTCACTTACCCTTTGGAAAGGCGGACTTCTCTGAAGACGACCTCGTTGTAAACTTGCTTGCTGCAGTTAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATCCGGTTAAACATAAGGGAAGTACTTGATTACAAGATTGCATCATCAAAAGCTTGAGGAATTTTACTCCAAACCTGTAAATGTCCTCTTCAATTTGTTTAATCTCAGCCCTTTTGGATGCAACTTTCGATCGTTTTGAACGGCTGAACGTTTGGTTAAGATTTTAAGAAAGTTGCTATGGTGTCTGAAGTAAGAAGAGAGCTTGTATGATTATCTTGGGATGAAGAGTAGTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTTGGAAACTGCATATTCATTTTCACCTCATCTGATTATTGATTATTTCTCAATTTTTGTTAGTTTATTTTTTGGGACA

Coding sequence (CDS)

ATGGCAATGGCCACTGTTCACTGTTCCCTTACAATGGCAATGGCCCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGACCCATTTCCACCTCTTTATCCCACCCCTTGATTCTCCAGTGCAGGGGAGGGAGCCCAATCAATTGGGTCGGCCTTAATTTCAGGCGAGAATGTAGGGTTCATTTGGTTGCCGCTGCTTTGGCTGCCGAAATTGAGGCGCCTGAGGCTGTGGAACAGGGGAATGATGGATCGGCTGTTTCGGTTGTGCCTAAGATTAAGAGGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGACCAGATCAAAGAGGTTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACGAAATTCGTGGAAACTGCTGAAGCACACTTCCGATTAAACATCGATCCCAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGCCAGACAGTCAAGGTAGCTGTCCTTACTCAAGGTGAAAAATTCGACGAAGCAAAAAATGCAGGAGCAGATTTGGTGGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGCTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAATTTAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACTGGGATTGTTCACTTACCCTTTGGAAAGGCGGACTTCTCTGAAGACGACCTCGTTGTAAACTTGCTTGCTGCAGTTAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATCCGGTTAAACATAAGGGAAGTACTTGATTACAAGATTGCATCATCAAAAGCTTGA

Protein sequence

MAMATVHCSLTMAMAHPQDLPSLLSFRPISTSLSHPLILQCRGGSPINWVGLNFRRECRVHLVAAALAAEIEAPEAVEQGNDGSAVSVVPKIKRGKAALPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA

Homology

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BLAST of Sed0007802 vs. NCBI nr
Match: XP_023004585.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 581.3 bits (1497), Expect = 5.6e-162
Identity = 308/358 (86.03%), Postives = 319/358 (89.11%), Query Frame = 0


Query: 1   MAMAT----VHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMAT    VH SLTMA     HP DLPSLLSFRPI+        SLSHP IL+ RGG P
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAVEQGND--GSAVSVVPKIKRGKAALPLKRD 120
           INWV  NFRRE R HLV AALAAEIE PEAVE+  +   +A  +VPKIK+GKAALPLKRD
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEASTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           EDDL+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Sed0007802 vs. NCBI nr
Match: XP_022960486.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata] >KAG7025633.1 50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 578.2 bits (1489), Expect = 4.8e-161
Identity = 307/355 (86.48%), Postives = 320/355 (90.14%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPI----STSLSHPLILQCRGGSPINW 60
           MAMA    TVH SLTMA     HPQDLPSLLSFRPI    +  + HPLI++ RG  PINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VGLNFRRECRVHLVAAALAAEIEAPEAVEQ-GNDG-SAVSVVPKIKRGKAALPLKRDRTR 120
           V  NFRRE R HLV AALAAEIE PEAVE+ G +G +A  +VPKIK+GKAALPLKRDRTR
Sbjct: 61  VDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRDRTR 120

Query: 121 SKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180
           SKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRATVN
Sbjct: 121 SKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180

Query: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240
           LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV
Sbjct: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240

Query: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300
           ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD
Sbjct: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300

Query: 301 LVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           L+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Sed0007802 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 575.9 bits (1483), Expect = 2.4e-160
Identity = 308/360 (85.56%), Postives = 318/360 (88.33%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMA    T   SLTMA     HPQD+PSLLSFRP++        SL HPL +Q RGG  
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAVEQGND----GSAVSVVPKIKRGKAALPLK 120
           INWV LNFRRE R HLV AALAAEIE  E VE+  +    G A SVVPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+KKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           FSEDDL+VNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRE+LDYKI SS A
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Sed0007802 vs. NCBI nr
Match: KAG6593282.1 (50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 575.9 bits (1483), Expect = 2.4e-160
Identity = 306/355 (86.20%), Postives = 319/355 (89.86%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPI----STSLSHPLILQCRGGSPINW 60
           MAMA    TVH SL MA     HPQDLPSLLSFRPI    +  + HPLI++ RG  PINW
Sbjct: 1   MAMATCCPTVHSSLMMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VGLNFRRECRVHLVAAALAAEIEAPEAVEQ-GNDG-SAVSVVPKIKRGKAALPLKRDRTR 120
           V  NFRRE R HLV AALAAEIE PEAVE+ G +G +A  +VPKIK+GKAALPLKRDRTR
Sbjct: 61  VDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRDRTR 120

Query: 121 SKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180
           SKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRATVN
Sbjct: 121 SKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180

Query: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240
           LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV
Sbjct: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240

Query: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300
           ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD
Sbjct: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300

Query: 301 LVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           L+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Sed0007802 vs. NCBI nr
Match: XP_023515181.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.6 bits (1472), Expect = 4.5e-159
Identity = 305/358 (85.20%), Postives = 319/358 (89.11%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPI----STSLSHPLILQCRGGSPINW 60
           MAMA    TVH SLTMA     +PQDLPSLLSFRPI    +  + HPLI++ RG  PINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VGLNFRRECRVHLVA---AALAAEIEAPEAVEQGND--GSAVSVVPKIKRGKAALPLKRD 120
           V LNFRRE R HLV    AALAAEIE PEAVE+  +   +A  +VPKIK+GKAALPLKRD
Sbjct: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           EDDL+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 5.5e-120
Identity = 241/347 (69.45%), Postives = 273/347 (78.67%), Query Frame = 0


Query: 1   MAMATVHCSLTMAMA----HPQDL---PSLLSF---RPISTSLSHPLILQCRGGSPINWV 60
           MA    H SL +A A      QDL   PSL SF   RP    LS PL+L   GGS     
Sbjct: 1   MAACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRP--NHLSFPLLL--LGGSRDRRC 60

Query: 61  GLNFRRECRVHLVAAALA-AEIEAPEAVEQGNDGSAVSVVPKIKRGKAALPLKRDRTRSK 120
               R      +V+A  A A+++  E +EQ    +AV   PK K+GKAAL LKRDRTRSK
Sbjct: 61  AAIDRASNHKFIVSAVAAEADLDTEEDLEQ--TATAVLDPPKPKKGKAALVLKRDRTRSK 120

Query: 121 RFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLP 180
           RFLEIQKLRE KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYNDQQLRATV+LP
Sbjct: 121 RFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVAS 240
           KGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA 
Sbjct: 181 KGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAG 240

Query: 241 LGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLV 300
           LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK +F+E+DL+
Sbjct: 241 LGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLL 300

Query: 301 VNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYK 337
           +N LAAVKSVE NKP GAKGVYWKSAHICSSMGPSI+LNIRE++D+K
Sbjct: 301 INFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341

[Close]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 8.0e-119
Identity = 226/341 (66.28%), Postives = 270/341 (79.18%), Query Frame = 0


Query: 8   CSLTMAMAHPQDLPSLLSFRP--ISTSLSHPLILQCRGGSPINWVGLNFRRECRVHL--- 67
           C  + +  + QD      F+P  +++SL   L L  R  S + WV    +++    +   
Sbjct: 12  CYASSSFQYQQDPSFQTHFKPLLLNSSLCR-LTLNQRERSCLKWVDFTSQKQSPKSVSFR 71

Query: 68  VAAALAAEIEAPEAVEQGNDGSAVSVVP---KIKRGKAALPLKRDRTRSKRFLEIQKLRE 127
           V AA+AAE E  +  E+  +   V+ +P   K K+GKAALPLK DRTRSKRFLEIQKLRE
Sbjct: 72  VLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLRE 131

Query: 128 NKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVA 187
            K+EYDLKTA+SL+KQMSSTKFVETAEAHFRLNIDPKYNDQQLRATV+LPKGTG+TVK+A
Sbjct: 132 IKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIA 191

Query: 188 VLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGL 247
           VL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM KVASLG++LGPRGL
Sbjct: 192 VLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGL 251

Query: 248 MPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLVVNLLAAVKSV 307
           MP PKAGTVT N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F E+DL++NL A +KSV
Sbjct: 252 MPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSV 311

Query: 308 EVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASS 341
           E NKPTGAKGVYWKSAHI SSMGPSIRLNIRE+LDYK  S+
Sbjct: 312 ETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.9e-76
Identity = 142/231 (61.47%), Postives = 186/231 (80.52%), Query Frame = 0


Query: 108 SKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 167
           S+R  + Q   EN K Y+   A++LLK++++ KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 168 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 227
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 228 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 287
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 288 LVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIA 339
           L+VNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D K+A
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKLA 235

[Close]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.4e-76
Identity = 145/168 (86.31%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 92  IKRGKAALPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRL 151
           +++GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISL+K+ + TKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 152 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 211
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 212 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 260
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.1e-74
Identity = 138/233 (59.23%), Postives = 184/233 (78.97%), Query Frame = 0


Query: 108 SKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 167
           S+R  E+Q   E+ +EY    A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 168 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 227
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 228 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 287
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 288 LVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASS 341
           L+VNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + DYK+  +
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEA 237

[Close]

BLAST of Sed0007802 vs. ExPASy TrEMBL
Match: A0A6J1KV03 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 2.7e-162
Identity = 308/358 (86.03%), Postives = 319/358 (89.11%), Query Frame = 0


Query: 1   MAMAT----VHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMAT    VH SLTMA     HP DLPSLLSFRPI+        SLSHP IL+ RGG P
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAVEQGND--GSAVSVVPKIKRGKAALPLKRD 120
           INWV  NFRRE R HLV AALAAEIE PEAVE+  +   +A  +VPKIK+GKAALPLKRD
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEASTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           EDDL+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Sed0007802 vs. ExPASy TrEMBL
Match: A0A6J1H7Q8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.3e-161
Identity = 307/355 (86.48%), Postives = 320/355 (90.14%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPI----STSLSHPLILQCRGGSPINW 60
           MAMA    TVH SLTMA     HPQDLPSLLSFRPI    +  + HPLI++ RG  PINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VGLNFRRECRVHLVAAALAAEIEAPEAVEQ-GNDG-SAVSVVPKIKRGKAALPLKRDRTR 120
           V  NFRRE R HLV AALAAEIE PEAVE+ G +G +A  +VPKIK+GKAALPLKRDRTR
Sbjct: 61  VDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRDRTR 120

Query: 121 SKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180
           SKRFLEIQKLRE+KKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQLRATVN
Sbjct: 121 SKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVN 180

Query: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240
           LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV
Sbjct: 181 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 240

Query: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300
           ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD
Sbjct: 241 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 300

Query: 301 LVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           L+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Sed0007802 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 308/360 (85.56%), Postives = 318/360 (88.33%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMA    T   SLTMA     HPQD+PSLLSFRP++        SL HPL +Q RGG  
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAVEQGND----GSAVSVVPKIKRGKAALPLK 120
           INWV LNFRRE R HLV AALAAEIE  E VE+  +    G A SVVPK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+KKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           FSEDDL+VNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRE+LDYKI SS A
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]

BLAST of Sed0007802 vs. ExPASy TrEMBL
Match: A0A6J1JXL6 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.4e-158
Identity = 304/359 (84.68%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMA    TV   L MA     HP DL SL + RPI+        SL HPLILQ RGG  
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAVEQG---NDGSAVSVVPKIKRGKAALPLKR 120
           INWV LNFRRE RVHLV AALAAEIE  E V++    NDG A S+VPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEDNDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRE+K+EYDLKTAISLLKQMS TKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           SEDDL+VNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRE+LDYKI SS A
Sbjct: 301 SEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]

BLAST of Sed0007802 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 4.1e-158
Identity = 304/360 (84.44%), Postives = 315/360 (87.50%), Query Frame = 0


Query: 1   MAMA----TVHCSLTMA---MAHPQDLPSLLSFRPIST-------SLSHPLILQCRGGSP 60
           MAMA    T+H SLTMA     HPQD  SLLSFRPI+        SL HPLILQ RGG  
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVGLNFRRECRVHLVAAALAAEIEAPEAV----EQGNDGSAVSVVPKIKRGKAALPLK 120
           INWV L F RECR HLV AALAAEIE  E V    E+GN G+A SV+PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLVVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYKIASSKA 343
           FSEDDL+VNLL+A+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN RE+LDYKI SS A
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]

BLAST of Sed0007802 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-121
Identity = 241/347 (69.45%), Postives = 273/347 (78.67%), Query Frame = 0


Query: 1   MAMATVHCSLTMAMA----HPQDL---PSLLSF---RPISTSLSHPLILQCRGGSPINWV 60
           MA    H SL +A A      QDL   PSL SF   RP    LS PL+L   GGS     
Sbjct: 1   MAACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRP--NHLSFPLLL--LGGSRDRRC 60

Query: 61  GLNFRRECRVHLVAAALA-AEIEAPEAVEQGNDGSAVSVVPKIKRGKAALPLKRDRTRSK 120
               R      +V+A  A A+++  E +EQ    +AV   PK K+GKAAL LKRDRTRSK
Sbjct: 61  AAIDRASNHKFIVSAVAAEADLDTEEDLEQ--TATAVLDPPKPKKGKAALVLKRDRTRSK 120

Query: 121 RFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLP 180
           RFLEIQKLRE KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYNDQQLRATV+LP
Sbjct: 121 RFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVAS 240
           KGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA 
Sbjct: 181 KGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAG 240

Query: 241 LGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLV 300
           LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK +F+E+DL+
Sbjct: 241 LGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLL 300

Query: 301 VNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREVLDYK 337
           +N LAAVKSVE NKP GAKGVYWKSAHICSSMGPSI+LNIRE++D+K
Sbjct: 301 INFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341

[Close]

BLAST of Sed0007802 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-80
Identity = 182/291 (62.54%), Postives = 207/291 (71.13%), Query Frame = 0


Query: 1   MAMATVHCSLTMAMA----HPQDL---PSLLSF---RPISTSLSHPLILQCRGGSPINWV 60
           MA    H SL +A A      QDL   PSL SF   RP    LS PL+L   GGS     
Sbjct: 1   MAACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRP--NHLSFPLLL--LGGSRDRRC 60

Query: 61  GLNFRRECRVHLVAAALA-AEIEAPEAVEQGNDGSAVSVVPKIKRGKAALPLKRDRTRSK 120
               R      +V+A  A A+++  E +EQ    +AV   PK K+GKAAL LKRDRTRSK
Sbjct: 61  AAIDRASNHKFIVSAVAAEADLDTEEDLEQ--TATAVLDPPKPKKGKAALVLKRDRTRSK 120

Query: 121 RFLEIQKLRENKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLP 180
           RFLEIQKLRE KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYNDQQLRATV+LP
Sbjct: 121 RFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVAS 240
           KGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA 
Sbjct: 181 KGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAG 240

Query: 241 LGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGK 281
           LGK+LGPRGLMPNPKAGTVT NIPQ+    ++GK+     K G+     GK
Sbjct: 241 LGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Sed0007802 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 163.3 bits (412), Expect = 3.4e-40
Identity = 90/224 (40.18%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 116 KLRENKKE-YDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 175
           +L+  KK  +DL  AI  +K  +  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 176 TVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKL 235
            VKVA   +G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 236 LGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLVVNLL 295
           L   GLMPNPK G+VT ++ +A+ + K G  ++R DKT I+H+P GK  FSE+ L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 296 AAVKSVEVNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREV 333
           A + ++ + KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of Sed0007802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004585.1	5.6e-162	86.03	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022960486.1	4.8e-161	86.48	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata] >KAG7025633.1 ...	[more]
XP_022152504.1	2.4e-160	85.56	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]
KAG6593282.1	2.4e-160	86.20	50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023515181.1	4.5e-159	85.20	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0007802 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY66	5.5e-120	69.45	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
Q9LE95	8.0e-119	66.28	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
B0JNQ5	2.9e-76	61.47	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
P49208	8.4e-76	86.31	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
Q3MA18	2.1e-74	59.23	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]

BLAST of Sed0007802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KV03	2.7e-162	86.03	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1	[more]
A0A6J1H7Q8	2.3e-161	86.48	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1	[more]
A0A6J1DG73	1.1e-160	85.56	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1	[more]
A0A6J1JXL6	2.4e-158	84.68	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1	[more]
A0A0A0K886	4.1e-158	84.44	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]

BLAST of Sed0007802 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	3.9e-121	69.45	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	2.0e-80	62.54	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	3.4e-40	40.18	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 133..323 e-value: 1.0E-47 score: 162.6
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 126..327 e-value: 1.10107E-72 score: 222.445
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 107..331 e-value: 2.0E-94 score: 313.2
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 102..332 score: 39.556091
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 171..262 e-value: 2.9E-83 score: 280.5
None	No IPR available	GENE3D	3.30.190.20		coord: 124..327 e-value: 2.9E-83 score: 280.5
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 121..332
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 121..332
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 224..242
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 110..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007802.1	Sed0007802.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding