Sed0007792 (gene) Chayote v1

Overview


Name	Sed0007792
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 6395818 .. 6396287 (-)
RNA-Seq Expression	Sed0007792
Synteny	Sed0007792

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTACTCTATAAATACTCCCTTAATCCCACTTTCCACTTTCACTTAATCACAAATCCTCTTTTCTTACATCTCCTCTTCTTCCTCTAAATCCTCTCCTAATCAGCATTAACACCGCCCTAATTATTAAATTATGGACGTTTTTATCCCCGAAGATTATGCAATTCGCCGCCGTATCGAGAAACAAGCCGCCGCCGCCTCCGCCGTCAAGGACCGGCCGCCGAGGAGGACTACCGACAAGGAGAAGGCGACCGCTGCCGGAATCCCGGGTTTCCGGTTCGGATCAATCGGCGCCGATCACGTGATTTACACTTGCTTCTCTCCCTGAGATTCCATTTGAAATTTTGCCCTTTTTTTTTCTTTTTATAGGGTGATTAATTTATTAGTACTACTAACAAAATTCGAAGTAGAAAATGTTTCTATATATTTTTTTTTATTTATAGAAATGTCCGTCTGTGCATTTTTGCTCA

mRNA sequence

GAATTACTCTATAAATACTCCCTTAATCCCACTTTCCACTTTCACTTAATCACAAATCCTCTTTTCTTACATCTCCTCTTCTTCCTCTAAATCCTCTCCTAATCAGCATTAACACCGCCCTAATTATTAAATTATGGACGTTTTTATCCCCGAAGATTATGCAATTCGCCGCCGTATCGAGAAACAAGCCGCCGCCGCCTCCGCCGTCAAGGACCGGCCGCCGAGGAGGACTACCGACAAGGAGAAGGCGACCGCTGCCGGAATCCCGGGTTTCCGGTTCGGATCAATCGGCGCCGATCACGTGATTTACACTTGCTTCTCTCCCTGAGATTCCATTTGAAATTTTGCCCTTTTTTTTTCTTTTTATAGGGTGATTAATTTATTAGTACTACTAACAAAATTCGAAGTAGAAAATGTTTCTATATATTTTTTTTTATTTATAGAAATGTCCGTCTGTGCATTTTTGCTCA

Coding sequence (CDS)

ATGGACGTTTTTATCCCCGAAGATTATGCAATTCGCCGCCGTATCGAGAAACAAGCCGCCGCCGCCTCCGCCGTCAAGGACCGGCCGCCGAGGAGGACTACCGACAAGGAGAAGGCGACCGCTGCCGGAATCCCGGGTTTCCGGTTCGGATCAATCGGCGCCGATCACGTGATTTACACTTGCTTCTCTCCCTGA

Protein sequence

MDVFIPEDYAIRRRIEKQAAAASAVKDRPPRRTTDKEKATAAGIPGFRFGSIGADHVIYTCFSP

Homology

[Close]

BLAST of Sed0007792 vs. NCBI nr
Match: KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   MDVFIPEDYAIRRRIEKQAAAASAVKDRPPR------RTTDKEKATAAGIPGFRFGSIGA 60
           MDVFIP+DY IRRRIEK+ AA + VK R P       R +DKEK   A    FRF + GA
Sbjct: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 130

Query: 61  DHVIYTCFS 64
           D+V++ CFS
Sbjct: 131 DNVVFNCFS 139

[Close]

BLAST of Sed0007792 vs. ExPASy TrEMBL
Match: A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MDVFIPEDYAIRRRIEKQAAAASAVKDRPPR------RTTDKEKATAAGIPGFRFGSIGA 60
          MDVFIP+DY IRRRIEK+ AA + VK R P       R +DKEK   A    FRF + GA
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DHVIYTCFS 64
          D+V++ CFS
Sbjct: 61 DNVVFNCFS 69

The following BLAST results are available for this feature:

BLAST of Sed0007792 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647863.1	5.1e-08	53.62	hypothetical protein Csa_000530 [Cucumis sativus]	[more]

BLAST of Sed0007792 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKA7	2.5e-08	53.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1	[more]

BLAST of Sed0007792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007792.1	Sed0007792.1	mRNA