Sed0007752 (gene) Chayote v1

Overview
NameSed0007752
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
LocationLG12: 10571729 .. 10573960 (-)
RNA-Seq ExpressionSed0007752
SyntenySed0007752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAAAGAAATAGGGGAAAATTTCTGAGAGTAAAGGCGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGAGTCTATGGCTCCTAAGAAATGGGTGCGTTTATCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGCGATGAATTGCAGTTATGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGACAAGGAAGAGGTGGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACTCATGGTGTGGAGAAGATCTTGCAGAGGAAGAGGCTGTTGCTGCACCAGCAAGGGAGGAGAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGACTACTCGGGTGCTGCCTCGAGAGCTCGCGATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAGAATTTGGGGGCAAGTCAGGTACGGAACTGGAAGATGGTATTATCAGAAGGGAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAACTAATGAAAAGGGGAAAAGTAAAGTTCTTATGGAAGGGAGGAATGAATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGATTTTAAAAAGTCAGAGCATGGGCAAGCTAAAGGAATTAAAATAAAAGAGGTGGGGCCTGATGCTTTCAATTTAAATAAAGAGTTTAAAGGGAATTTTAAAATTCCTTTAGTTCATGTTGAGCCAGATTTTAAGTGTTTTAATGGGCCACTTTTTAAAGTGACTTTGGAGGAGAATGAAAATCCTTTTGTTCCTCAACAAAAAATTATGTCTTCTGCTGCAGAAAAGTTGATTGATTTTGAATTTGATCCAAAAAAATTAGCTTCCAAAAATAATAAAAGGTTTGTTATTAGAGATGATGAGGGACTATTAAAAATGGAAAAATCTTTAAGGAAAAATAAGGAATTGGATTATGAAGGAGAGGAGAGTGGTGGGAAGAAAGAATGTGAGAAGCTTTCAGTAATCAAATGGAAGAGACGTGCTCGGCAAGGAGAGAGGCATTTAGAATCTTCAACTAATTGTGTATTGAAAAAGGAAGATGGGCTAATTGGAAAAAAACATGATATCGCAGGTATTGAAAAGGTTGAAAATGGAAAAAGAGCTAGGCTTTCATGCATTGAGTCAGTCAATGGGATATCGGCGGAGACTGTTGAACAGTCTCGCCGGACTCAATGAAAACCCTATGTTGGAACGCTTGGGGGTTGAAAAATTCCCGAGCCACTAGGGCACTTCGTCACGAAGTGCTCAAGATTAGACCGAATATTGTGTTTGTCTGCGAAACTAAGTGTGGTGAGAAAGCTCTGGATAGATTGAAAGCTAGTTTGGATTTTGATTGTTGCTTCTGTGTCCCTTGCGTTGGCCTTAGCGGGGGTTTGATGATTTTCTGGAAGTCTTTGTTATATGTTAGAGCTTGTTCTTACTCTCAAGGTCACATTGATATCCTAATCAATGACCCTTTGGAGAGTTGGAGATTTACGGGCTTCTACGGGAATCCGATTACAAAGTTGCGAGAAGATTTCTGGAATCTTTTGAGGAGGTTGGCTGAGTGCTCGAGGTTACCTTGGCTTTTGGGAGGGGATTTTAATGAGGTTTTAGATTTTGATGAGCAGCTGAATGGTTCGATGAGAAACAAGTCAGGTATGGTTGCGTTCAGGGAAGTCATTAATGAGTGCTCGCTCATTGATCTGGGCTTCTCCGGAGATAAATTTACGTGGATTAAAAACAAATATTCTGATTCGGCAACTAGGGTACGTCTCGACAGGTATTTCGCTAATCCTTACTTTATTTCTAAAGCTGGTAAGATTTCTATTTTTCATTTTAGTTTCCACTCTTCAGACCATAGAGTTATTACTTCCGAGTTTAGATGGGAAAGTGAGAGCTCTAACGTCTGTGCTTTCTCCAAAAATCTTACAAGGTTTGAAGATGGGTGGGTTAATTTTAGTGATTGTAAAGAGGTTTTGAAGAAGAATTGGATCATGAGAGAAGATAGGGGAAACGGTGCCTCAAATCTTATGATATGTATTAGAGGATGCTTAA

mRNA sequence

ATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAAAGAAATAGGGGAAAATTTCTGAGAGTAAAGGCGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGAGTCTATGGCTCCTAAGAAATGGGTGCGTTTATCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGCGATGAATTGCAGTTATGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGACAAGGAAGAGGTGGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACTCATGGTGTGGAGAAGATCTTGCAGAGGAAGAGGCTGTTGCTGCACCAGCAAGGGAGGAGAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGACTACTCGGGTGCTGCCTCGAGAGCTCGCGATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAGAATTTGGGGGCAAGTCAGGTACGGAACTGGAAGATGGTATTATCAGAAGGGAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAACTAATGAAAAGGGGAAAAGTAAAGTTCTTATGGAAGGGAGGAATGAATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGATTTTAAAAAGTCAGAGCATGGGCAAGCTAAAGGAATTAAAATAAAAGAGGTGGGGCCTGATGCTTTCAATTTAAATAAAGAGTTTAAAGGGAATTTTAAAATTCCTTTAGTTCATGTTGAGCCAGATTTTAAGTGTTTTAATGGGCCACTTTTTAAAGTGACTTTGGAGGAGAATGAAAATCCTTTTGTTCCTCAACAAAAAATTATGTCTTCTGCTGCAGAAAAGTTGATTGATTTTGAATTTGATCCAAAAAAATTAGCTTCCAAAAATAATAAAAGGTTTGTTATTAGAGATGATGAGGGACTATTAAAAATGGAAAAATCTTTAAGGAAAAATAAGGAATTGGATTATGAAGGAGAGGAGAGTGGTGGGAAGAAAGAATGTGAGAAGCTTTCAGTAATCAAATGGAAGAGACGTGCTCGGCAAGGAGAGAGGCATTTAGAATCTTCAACTAATTGTGTATTGAAAAAGGAAGATGGGCTAATTGGAAAAAAACATGATATCGCAGAGGATGCTTAA

Coding sequence (CDS)

ATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAAAGAAATAGGGGAAAATTTCTGAGAGTAAAGGCGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTTGAAATTGAAGAGCGAGTCTATGGCTCCTAAGAAATGGGTGCGTTTATCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGCGATGAATTGCAGTTATGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGACAAGGAAGAGGTGGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACTCATGGTGTGGAGAAGATCTTGCAGAGGAAGAGGCTGTTGCTGCACCAGCAAGGGAGGAGAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGACTACTCGGGTGCTGCCTCGAGAGCTCGCGATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAGAATTTGGGGGCAAGTCAGGTACGGAACTGGAAGATGGTATTATCAGAAGGGAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTAACTAATGAAAAGGGGAAAAGTAAAGTTCTTATGGAAGGGAGGAATGAATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGATTTTAAAAAGTCAGAGCATGGGCAAGCTAAAGGAATTAAAATAAAAGAGGTGGGGCCTGATGCTTTCAATTTAAATAAAGAGTTTAAAGGGAATTTTAAAATTCCTTTAGTTCATGTTGAGCCAGATTTTAAGTGTTTTAATGGGCCACTTTTTAAAGTGACTTTGGAGGAGAATGAAAATCCTTTTGTTCCTCAACAAAAAATTATGTCTTCTGCTGCAGAAAAGTTGATTGATTTTGAATTTGATCCAAAAAAATTAGCTTCCAAAAATAATAAAAGGTTTGTTATTAGAGATGATGAGGGACTATTAAAAATGGAAAAATCTTTAAGGAAAAATAAGGAATTGGATTATGAAGGAGAGGAGAGTGGTGGGAAGAAAGAATGTGAGAAGCTTTCAGTAATCAAATGGAAGAGACGTGCTCGGCAAGGAGAGAGGCATTTAGAATCTTCAACTAATTGTGTATTGAAAAAGGAAGATGGGCTAATTGGAAAAAAACATGATATCGCAGAGGATGCTTAA

Protein sequence

MIGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGEKPLIQRQGGQGRGGGRGREEDVRAENSWCGEDLAEEEAVAAPAREERQFPMDLERRMAGNDYSGAASRARDSKGQIQSEGFAEFGGKSGTELEDGIIRRENREKFGGNKGHVAEDDKVVTNEKGKSKVLMEGRNELLFGPFDIHIKTHDGFDFKKSEHGQAKGIKIKEVGPDAFNLNKEFKGNFKIPLVHVEPDFKCFNGPLFKVTLEENENPFVPQQKIMSSAAEKLIDFEFDPKKLASKNNKRFVIRDDEGLLKMEKSLRKNKELDYEGEESGGKKECEKLSVIKWKRRARQGERHLESSTNCVLKKEDGLIGKKHDIAEDA
Homology
BLAST of Sed0007752 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 79.3 bits (194), Expect = 8.7e-11
Identity = 70/223 (31.39%), Postives = 99/223 (44.39%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           +GEF+  D E D+   G+FLRVK  I+I  PLRR + +     A ++W  ++YE LP+FC
Sbjct: 85  LGEFMEVDLENDEFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFC 144

Query: 62  RGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--------RQGG- 121
             CGR+GH    C    +  G   PFG ELR   P   F GE    Q        R GG 
Sbjct: 145 YVCGRIGHTDKAC-LTKLAAGEQAPFGRELRYIPPKKKFGGESWRSQENRRSGGGRSGGS 204

Query: 122 ----QGRGGGRGREEDVRAEN-SWCGEDLAEEEAVAAPAREERQFPMDLERRMAGNDYSG 181
                G  GGRG     R++  SW  +D+ E+ +      EE   P  ++          
Sbjct: 205 GPWFSGGSGGRGVGGRTRSDALSWRKDDMGEKTS-GKGDEEEVNSPSKMDLPATHEKGDK 264

Query: 182 AASRARDSKGQIQSEGFAEFGGKSGTELEDGIIRRENREKFGG 209
           A     D+  ++  +      G SG   E G   ++N+E   G
Sbjct: 265 AKKCLEDALAEMSQDEKDAAAGGSGKREEKG---QKNKETGAG 302

BLAST of Sed0007752 vs. NCBI nr
Match: XP_039827601.1 (uncharacterized protein LOC120689378 [Panicum virgatum])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-10
Identity = 88/306 (28.76%), Postives = 130/306 (42.48%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           +GEF+  D E D    G+FLRVK  I+I  PLRR + +     A ++W  ++YE LP+FC
Sbjct: 148 LGEFMEVDLENDVFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFC 207

Query: 62  RGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFRGEKPLIQ--------RQGG- 121
             CGR+GH    C   +  E    PFG ELR   P   F GE    Q        R GG 
Sbjct: 208 YVCGRIGHTDKACLTKLAAEE-QAPFGRELRYIPPKKKFGGESWRSQENRRSGGGRSGGS 267

Query: 122 ----QGRGGGRGREEDVRAEN-SWCGEDLAE-------EEAVAAPAR-----------EE 181
                G  GGRG     R++  SW  +D+ E       EE V +P++           + 
Sbjct: 268 GPWFSGGSGGRGVGGRTRSDALSWRKDDMGEKTRGKGDEEEVNSPSKMDLPATHEKGDKA 327

Query: 182 RQFPMDLERRMAGNDYSGAA--SRARDSKGQIQSEGFA------EFGGKSGTELEDGIIR 241
           ++   D    M+ ++   AA  S  R+ KGQ   E  A      E    S  +LE    R
Sbjct: 328 KKCLEDALAEMSQDEKDAAAGGSGKREEKGQKNKETGAGVEKVLEGSTNSSMQLEKSNQR 387

Query: 242 RENREKFGGNKGHVAEDDKVVTNEKGKSKVLMEGRNELLFGPFDIHIKTHDGFDFKKSEH 266
                +    K          ++E+  + V+M  RN +     D+  ++  G    ++EH
Sbjct: 388 EGQNLQTQPRKFKRQMRGSKTSDEQSGAGVVMGKRNGM--ETMDVDEESDRGGKKARNEH 447

BLAST of Sed0007752 vs. NCBI nr
Match: OQU92454.1 (hypothetical protein SORBI_3001G347001 [Sorghum bicolor])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-08
Identity = 47/123 (38.21%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           IG  +  D E D    G FLR+K  IDIR PL R + L+        W  + YE LP FC
Sbjct: 14  IGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFC 73

Query: 62  RGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGEKPLIQR--QGGQGRGG--GR 121
            GCG +GH+   C   V  E     FG+ LR   + ++G+    QR  +GG    G  GR
Sbjct: 74  YGCGLLGHVEKECDSCVEEEVGFKQFGDWLRVTPTRWKGQGDQRQRWSEGGSSGSGKFGR 133

BLAST of Sed0007752 vs. NCBI nr
Match: EOY19851.1 (Zinc finger, CCHC-type-like protein [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-08
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 17  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSY 76
           R KF+R+K L+D+  PLRR L L  E     KW+ L YE LP+FC  CGR+GH+  NC+Y
Sbjct: 165 RDKFMRIKVLLDLAKPLRRGLMLSMEE-NHVKWITLQYESLPQFCFKCGRMGHIESNCAY 224

Query: 77  VVIGE 82
             + E
Sbjct: 225 QCMDE 228

BLAST of Sed0007752 vs. NCBI nr
Match: TVU42476.1 (hypothetical protein EJB05_08883, partial [Eragrostis curvula])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-08
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           IG+ IG   E D+ + G FLR+K  +DIR+P+ R + L+ +     +W  L YE LPEFC
Sbjct: 157 IGDKIGQCLEVDEASNGPFLRIKVQLDIRVPILRGVMLEVDEKRHGRWCPLEYEFLPEFC 216

Query: 62  RGCGRVGHLAMNC 75
             CG +GH+  NC
Sbjct: 217 HLCGIIGHIDKNC 229

BLAST of Sed0007752 vs. ExPASy TrEMBL
Match: A0A803LAB8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNR---GKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLP 61
           IG+F+G   E D  +    G+FLR+K +IDI  PLRR L L +   +  KWV L YE+L 
Sbjct: 148 IGDFLGCFLEADDSDPLGWGEFLRIKVMIDIAKPLRRGLFL-ATGPSSSKWVALKYERLD 207

Query: 62  EFCRGCGRVGHLAMNCSY----VVIGEGIPFPFGEELR-EPTSHFRGEKPLIQRQ 109
           EFC  CGR+ H  M CS+      +   I + +G  LR  P    R  +  I+++
Sbjct: 208 EFCFFCGRLDHTEMGCSFKDEAKEVNADIVYQYGPWLRASPRKQIRKSEAEIEKE 261

BLAST of Sed0007752 vs. ExPASy TrEMBL
Match: A0A1Z5S941 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347001 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-09
Identity = 47/123 (38.21%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           IG  +  D E D    G FLR+K  IDIR PL R + L+        W  + YE LP FC
Sbjct: 14  IGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFC 73

Query: 62  RGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGEKPLIQR--QGGQGRGG--GR 121
            GCG +GH+   C   V  E     FG+ LR   + ++G+    QR  +GG    G  GR
Sbjct: 74  YGCGLLGHVEKECDSCVEEEVGFKQFGDWLRVTPTRWKGQGDQRQRWSEGGSSGSGKFGR 133

BLAST of Sed0007752 vs. ExPASy TrEMBL
Match: A0A061FRZ1 (Zinc finger, CCHC-type-like protein OS=Theobroma cacao OX=3641 GN=TCM_045227 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 17  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSY 76
           R KF+R+K L+D+  PLRR L L  E     KW+ L YE LP+FC  CGR+GH+  NC+Y
Sbjct: 165 RDKFMRIKVLLDLAKPLRRGLMLSMEE-NHVKWITLQYESLPQFCFKCGRMGHIESNCAY 224

Query: 77  VVIGE 82
             + E
Sbjct: 225 QCMDE 228

BLAST of Sed0007752 vs. ExPASy TrEMBL
Match: A0A5J9W3H8 (Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08883 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           IG+ IG   E D+ + G FLR+K  +DIR+P+ R + L+ +     +W  L YE LPEFC
Sbjct: 157 IGDKIGQCLEVDEASNGPFLRIKVQLDIRVPILRGVMLEVDEKRHGRWCPLEYEFLPEFC 216

Query: 62  RGCGRVGHLAMNC 75
             CG +GH+  NC
Sbjct: 217 HLCGIIGHIDKNC 229

BLAST of Sed0007752 vs. ExPASy TrEMBL
Match: A0A2T7EQ43 (CCHC-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G170400 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 46/125 (36.80%), Postives = 60/125 (48.00%), Query Frame = 0

Query: 2   IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFC 61
           +GEF+  + E D+   G+FL +KA +DIR PL R   L         W  L YE LP+FC
Sbjct: 86  VGEFMAMELEDDETAIGQFLHIKAKLDIRKPLIRGPTLHVGDDEKPIWCPLVYEFLPDFC 145

Query: 62  RGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGEKPLIQRQGG---------QG 118
             CGR+GHL   C  VV+ +G    F ++L       R +     R GG          G
Sbjct: 146 YTCGRIGHLD-KCCEVVLKDGETQQFSKDLWFILKKKRWDAGSSNRSGGGRYIAPWRNNG 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_039815364.18.7e-1131.39uncharacterized protein LOC120678302 [Panicum virgatum][more]
XP_039827601.11.1e-1028.76uncharacterized protein LOC120689378 [Panicum virgatum][more]
OQU92454.11.4e-0838.21hypothetical protein SORBI_3001G347001 [Sorghum bicolor][more]
EOY19851.11.8e-0849.23Zinc finger, CCHC-type-like protein [Theobroma cacao][more]
TVU42476.11.8e-0843.84hypothetical protein EJB05_08883, partial [Eragrostis curvula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803LAB81.0e-0938.26Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A1Z5S9416.7e-0938.21CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347... [more]
A0A061FRZ18.7e-0949.23Zinc finger, CCHC-type-like protein OS=Theobroma cacao OX=3641 GN=TCM_045227 PE=... [more]
A0A5J9W3H88.7e-0943.84Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08883... [more]
A0A2T7EQ431.1e-0836.80CCHC-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 27..76
e-value: 1.5E-10
score: 40.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..128
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 61..74
score: 8.812096

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007752.1Sed0007752.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding