Sed0007680 (gene) Chayote v1

Overview
NameSed0007680
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDirigent protein
LocationLG08: 1777006 .. 1777483 (+)
RNA-Seq ExpressionSed0007680
SyntenySed0007680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACGTTGATCGGGCCAAGAGATTCATGATGCTATGTCGCGGCAGAATGAGTACAGTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA

mRNA sequence

ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA

Coding sequence (CDS)

ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA

Protein sequence

MAASCKIPLISMAILEAVRLIEALNPNVSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTTLLMSLTFARSGGPTTAAHSASAAESDRERSPGNAGRRRDVGFLAGLTRTFSFREMDATGKNVTLIYE
Homology
BLAST of Sed0007680 vs. NCBI nr
Match: XP_022135557.1 (dirigent protein 22-like [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-17
Identity = 82/179 (45.81%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S K  LIS+AIL A   IEALNPN           VSGPNA A+Q A  RTN T SD
Sbjct: 1   MAVSRKSLLISLAILVAAHSIEALNPNVTRIQFYMHDIVSGPNATAVQVAGRRTNYTGSD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P TA PELN+T                   LLM+LTFA +GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTATPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFAITGGTYNG 120

Query: 121 AHSASAAE----SDRERSP---GNAGRRRDVGFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +        S+    P   G    R   G+   L RTFSFREMDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMSEVREMPVVGGTGAFRLARGYC--LARTFSFREMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. NCBI nr
Match: KAA0058015.1 (dirigent protein 22-like [Cucumis melo var. makuwa] >TYJ98238.1 dirigent protein 22-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-15
Identity = 80/179 (44.69%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S KI +ISMAIL AVR IEAL+PN           VSGPN  AIQ A  +TN T +D
Sbjct: 1   MAVSSKILVISMAILVAVRSIEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYTGTD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P T  PELN+T                   LLM+LTF   GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFGMIGGQYNG 120

Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +    +      RE    G  G  R V G+   L RT+SFR MDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTYSFRNMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. NCBI nr
Match: XP_031742018.1 (dirigent protein 22-like [Cucumis sativus] >KGN63770.1 hypothetical protein Csa_013414 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 78/179 (43.58%), Postives = 92/179 (51.40%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S KI +ISMAIL AV   EAL+PN           VSGPN  AIQ A  +TN   +D
Sbjct: 1   MAVSSKILVISMAILVAVCSTEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYAGTD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P T  PELN+T                   LLM+LTF  +GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSAQQNEFSLLMTLTFGMTGGQYNG 120

Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +    +      RE    G  G  R V G+   L RTFSFR MDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTFSFRNMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. NCBI nr
Match: KAG7023279.1 (Dirigent protein 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 62/149 (41.61%), Postives = 72/149 (48.32%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MAAS KI LISMAIL    ++EALN N           VSGPNA  IQ A  RTN T SD
Sbjct: 1   MAASSKILLISMAIL---LVVEALNLNVTRIQFYMHDIVSGPNATGIQVARRRTNYTGSD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTTL-------LMSLTFARSGGPTTAAH---------- 119
           PIAA+F S+FM D P T AP L   +       L ++   +   P   A+          
Sbjct: 61  PIAAMFGSIFMMDYPLTVAPGLGLDVDWACSGDLCNVVATKGVQPFDDANLRNDRWTVPR 120

BLAST of Sed0007680 vs. NCBI nr
Match: KAG6589590.1 (Dirigent protein 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-07
Identity = 61/149 (40.94%), Postives = 71/149 (47.65%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MAAS KI LISMAIL    ++EALN N           VSGPN   IQ A  RTN T SD
Sbjct: 1   MAASSKILLISMAIL---LVVEALNLNVTRIQFYMHDIVSGPNTTGIQVARRRTNYTGSD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTTL-------LMSLTFARSGGPTTAAH---------- 119
           PIAA+F S+FM D P T AP L   +       L ++   +   P   A+          
Sbjct: 61  PIAAMFGSIFMMDYPLTVAPGLGLDVDWACSGDLCNVVATKGVQPFDDANLRNDRWTVPR 120

BLAST of Sed0007680 vs. ExPASy TrEMBL
Match: A0A6J1C315 (Dirigent protein OS=Momordica charantia OX=3673 GN=LOC111007482 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 82/179 (45.81%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S K  LIS+AIL A   IEALNPN           VSGPNA A+Q A  RTN T SD
Sbjct: 1   MAVSRKSLLISLAILVAAHSIEALNPNVTRIQFYMHDIVSGPNATAVQVAGRRTNYTGSD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P TA PELN+T                   LLM+LTFA +GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTATPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFAITGGTYNG 120

Query: 121 AHSASAAE----SDRERSP---GNAGRRRDVGFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +        S+    P   G    R   G+   L RTFSFREMDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMSEVREMPVVGGTGAFRLARGYC--LARTFSFREMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. ExPASy TrEMBL
Match: A0A5D3BJ74 (Dirigent protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00100 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 80/179 (44.69%), Postives = 94/179 (52.51%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S KI +ISMAIL AVR IEAL+PN           VSGPN  AIQ A  +TN T +D
Sbjct: 1   MAVSSKILVISMAILVAVRSIEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYTGTD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P T  PELN+T                   LLM+LTF   GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFGMIGGQYNG 120

Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +    +      RE    G  G  R V G+   L RT+SFR MDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTYSFRNMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. ExPASy TrEMBL
Match: A0A0A0LPF3 (Dirigent protein OS=Cucumis sativus OX=3659 GN=Csa_1G015640 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 78/179 (43.58%), Postives = 92/179 (51.40%), Query Frame = 0

Query: 1   MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
           MA S KI +ISMAIL AV   EAL+PN           VSGPN  AIQ A  +TN   +D
Sbjct: 1   MAVSSKILVISMAILVAVCSTEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYAGTD 60

Query: 61  PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
           PIAA+F SVFM D P T  PELN+T                   LLM+LTF  +GG    
Sbjct: 61  PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSAQQNEFSLLMTLTFGMTGGQYNG 120

Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
           +  +    +      RE    G  G  R V G+   L RTFSFR MDA  G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTFSFRNMDAVIGYNVTLIHD 177

BLAST of Sed0007680 vs. ExPASy TrEMBL
Match: A0A6J1AHG7 (Dirigent protein OS=Herrania umbratica OX=108875 GN=LOC110417965 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 49/140 (35.00%), Postives = 69/140 (49.29%), Query Frame = 0

Query: 28  VSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTT------------- 87
           V GP   A++ A  R+N T  DPIAA F S+FM D P T  P +N+T             
Sbjct: 38  VGGPEPTAVRVA-GRSNFTGQDPIAATFGSIFMMDNPLTVTPNINSTLVGRAQGMYAMSS 97

Query: 88  ------LLMSLTFARSGGP----TTAAHSASAAESDRERSP--GNAGR-RRDVGFLAGLT 141
                 LLM+LT+A + GP    T +    +   ++    P  G  G+ R   G+   L 
Sbjct: 98  QQKEFSLLMTLTYAFTSGPYNGSTFSVLGRNPVMNEVREMPVVGGTGKFRLARGYC--LA 157

BLAST of Sed0007680 vs. ExPASy TrEMBL
Match: A0A7J0H1V1 (Dirigent protein OS=Actinidia rufa OX=165716 GN=Acr_26g0002310 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 0

Query: 28  VSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTT------------- 87
           V GPN  A++ A  R+N ++ DPIAA+F S+F+ D P TA+P+LN+T             
Sbjct: 38  VGGPNPTAVRVA-GRSNFSSPDPIAAMFGSIFVIDNPLTASPDLNSTLTGRAQGIYAMSS 97

Query: 88  ------LLMSLTFARSGGPTTAAHSASAAESDRERSP------GNAGRRRDVGFLAGLTR 141
                 LLM+LT+    GP   +  +   ++   R        G  G  R     A L +
Sbjct: 98  QHNEFSLLMTLTYNFVSGPYNGSSFSIVGQNPVMREVREMPIIGGTGMFRLARGYA-LAK 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022135557.14.6e-1745.81dirigent protein 22-like [Momordica charantia][more]
KAA0058015.19.5e-1544.69dirigent protein 22-like [Cucumis melo var. makuwa] >TYJ98238.1 dirigent protein... [more]
XP_031742018.12.3e-1343.58dirigent protein 22-like [Cucumis sativus] >KGN63770.1 hypothetical protein Csa_... [more]
KAG7023279.12.5e-0741.61Dirigent protein 15, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6589590.17.3e-0740.94Dirigent protein 15, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C3152.2e-1745.81Dirigent protein OS=Momordica charantia OX=3673 GN=LOC111007482 PE=3 SV=1[more]
A0A5D3BJ744.6e-1544.69Dirigent protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G001... [more]
A0A0A0LPF31.1e-1343.58Dirigent protein OS=Cucumis sativus OX=3659 GN=Csa_1G015640 PE=3 SV=1[more]
A0A6J1AHG72.8e-0435.00Dirigent protein OS=Herrania umbratica OX=108875 GN=LOC110417965 PE=3 SV=1[more]
A0A7J0H1V13.7e-0434.53Dirigent protein OS=Actinidia rufa OX=165716 GN=Acr_26g0002310 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007680.1Sed0007680.1mRNA