Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACGTTGATCGGGCCAAGAGATTCATGATGCTATGTCGCGGCAGAATGAGTACAGTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA
mRNA sequence
ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA
Coding sequence (CDS)
ATGGCCGCTTCCTGCAAGATACCGCTGATTTCCATGGCGATTCTCGAAGCTGTTCGTTTGATCGAGGCGTTAAACCCTAATGTGAGTGGTCCGAACGCCGCTGCGATTCAAGCCGCCGTCTGGCGGACGAACTGCACGGCTTCGGATCCAATCGCCGCCGTGTTTCGGTCCGTTTTCATGACGGATACGCCGTTCACGGCCGCGCCGGAGTTGAACACGACTCTTTTGATGTCGCTAACCTTCGCGAGGTCTGGCGGACCGACAACGGCAGCTCATTCAGCGTCGGCGGCGGAATCCGATCGTGAACGAAGTCCGGGAAATGCAGGTCGTCGGAGAGACGTGGGTTTTCTGGCTGGCCTTACAAGAACATTTTCGTTCCGAGAAATGGATGCAACTGGTAAGAACGTTACTTTGATTTATGAGTGA
Protein sequence
MAASCKIPLISMAILEAVRLIEALNPNVSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTTLLMSLTFARSGGPTTAAHSASAAESDRERSPGNAGRRRDVGFLAGLTRTFSFREMDATGKNVTLIYE
Homology
BLAST of Sed0007680 vs. NCBI nr
Match:
XP_022135557.1 (dirigent protein 22-like [Momordica charantia])
HSP 1 Score: 98.6 bits (244), Expect = 4.6e-17
Identity = 82/179 (45.81%), Postives = 94/179 (52.51%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S K LIS+AIL A IEALNPN VSGPNA A+Q A RTN T SD
Sbjct: 1 MAVSRKSLLISLAILVAAHSIEALNPNVTRIQFYMHDIVSGPNATAVQVAGRRTNYTGSD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P TA PELN+T LLM+LTFA +GG
Sbjct: 61 PIAAMFGSVFMMDNPLTATPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFAITGGTYNG 120
Query: 121 AHSASAAE----SDRERSP---GNAGRRRDVGFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + S+ P G R G+ L RTFSFREMDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMSEVREMPVVGGTGAFRLARGYC--LARTFSFREMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. NCBI nr
Match:
KAA0058015.1 (dirigent protein 22-like [Cucumis melo var. makuwa] >TYJ98238.1 dirigent protein 22-like [Cucumis melo var. makuwa])
HSP 1 Score: 90.9 bits (224), Expect = 9.5e-15
Identity = 80/179 (44.69%), Postives = 94/179 (52.51%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S KI +ISMAIL AVR IEAL+PN VSGPN AIQ A +TN T +D
Sbjct: 1 MAVSSKILVISMAILVAVRSIEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYTGTD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P T PELN+T LLM+LTF GG
Sbjct: 61 PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFGMIGGQYNG 120
Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + + RE G G R V G+ L RT+SFR MDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTYSFRNMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. NCBI nr
Match:
XP_031742018.1 (dirigent protein 22-like [Cucumis sativus] >KGN63770.1 hypothetical protein Csa_013414 [Cucumis sativus])
HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 78/179 (43.58%), Postives = 92/179 (51.40%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S KI +ISMAIL AV EAL+PN VSGPN AIQ A +TN +D
Sbjct: 1 MAVSSKILVISMAILVAVCSTEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYAGTD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P T PELN+T LLM+LTF +GG
Sbjct: 61 PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSAQQNEFSLLMTLTFGMTGGQYNG 120
Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + + RE G G R V G+ L RTFSFR MDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTFSFRNMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. NCBI nr
Match:
KAG7023279.1 (Dirigent protein 15, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 62/149 (41.61%), Postives = 72/149 (48.32%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MAAS KI LISMAIL ++EALN N VSGPNA IQ A RTN T SD
Sbjct: 1 MAASSKILLISMAIL---LVVEALNLNVTRIQFYMHDIVSGPNATGIQVARRRTNYTGSD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTTL-------LMSLTFARSGGPTTAAH---------- 119
PIAA+F S+FM D P T AP L + L ++ + P A+
Sbjct: 61 PIAAMFGSIFMMDYPLTVAPGLGLDVDWACSGDLCNVVATKGVQPFDDANLRNDRWTVPR 120
BLAST of Sed0007680 vs. NCBI nr
Match:
KAG6589590.1 (Dirigent protein 15, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 64.7 bits (156), Expect = 7.3e-07
Identity = 61/149 (40.94%), Postives = 71/149 (47.65%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MAAS KI LISMAIL ++EALN N VSGPN IQ A RTN T SD
Sbjct: 1 MAASSKILLISMAIL---LVVEALNLNVTRIQFYMHDIVSGPNTTGIQVARRRTNYTGSD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTTL-------LMSLTFARSGGPTTAAH---------- 119
PIAA+F S+FM D P T AP L + L ++ + P A+
Sbjct: 61 PIAAMFGSIFMMDYPLTVAPGLGLDVDWACSGDLCNVVATKGVQPFDDANLRNDRWTVPR 120
BLAST of Sed0007680 vs. ExPASy TrEMBL
Match:
A0A6J1C315 (Dirigent protein OS=Momordica charantia OX=3673 GN=LOC111007482 PE=3 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 82/179 (45.81%), Postives = 94/179 (52.51%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S K LIS+AIL A IEALNPN VSGPNA A+Q A RTN T SD
Sbjct: 1 MAVSRKSLLISLAILVAAHSIEALNPNVTRIQFYMHDIVSGPNATAVQVAGRRTNYTGSD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P TA PELN+T LLM+LTFA +GG
Sbjct: 61 PIAAMFGSVFMMDNPLTATPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFAITGGTYNG 120
Query: 121 AHSASAAE----SDRERSP---GNAGRRRDVGFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + S+ P G R G+ L RTFSFREMDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMSEVREMPVVGGTGAFRLARGYC--LARTFSFREMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. ExPASy TrEMBL
Match:
A0A5D3BJ74 (Dirigent protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00100 PE=3 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 80/179 (44.69%), Postives = 94/179 (52.51%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S KI +ISMAIL AVR IEAL+PN VSGPN AIQ A +TN T +D
Sbjct: 1 MAVSSKILVISMAILVAVRSIEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYTGTD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P T PELN+T LLM+LTF GG
Sbjct: 61 PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSSQQNEFSLLMTLTFGMIGGQYNG 120
Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + + RE G G R V G+ L RT+SFR MDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTYSFRNMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. ExPASy TrEMBL
Match:
A0A0A0LPF3 (Dirigent protein OS=Cucumis sativus OX=3659 GN=Csa_1G015640 PE=3 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 78/179 (43.58%), Postives = 92/179 (51.40%), Query Frame = 0
Query: 1 MAASCKIPLISMAILEAVRLIEALNPN-----------VSGPNAAAIQAAVWRTNCTASD 60
MA S KI +ISMAIL AV EAL+PN VSGPN AIQ A +TN +D
Sbjct: 1 MAVSSKILVISMAILVAVCSTEALDPNVTRIQFYMHDIVSGPNPTAIQVAGRQTNYAGTD 60
Query: 61 PIAAVFRSVFMTDTPFTAAPELNTT-------------------LLMSLTFARSGGPTTA 120
PIAA+F SVFM D P T PELN+T LLM+LTF +GG
Sbjct: 61 PIAAMFGSVFMMDNPLTVTPELNSTLIGRAQGIYAMSAQQNEFSLLMTLTFGMTGGQYNG 120
Query: 121 AHSASAAESD-----RERS-PGNAGRRRDV-GFLAGLTRTFSFREMDAT-GKNVTLIYE 142
+ + + RE G G R V G+ L RTFSFR MDA G NVTLI++
Sbjct: 121 SSFSVVGRNPIMNEVREMPVVGGTGIFRLVRGYC--LARTFSFRNMDAVIGYNVTLIHD 177
BLAST of Sed0007680 vs. ExPASy TrEMBL
Match:
A0A6J1AHG7 (Dirigent protein OS=Herrania umbratica OX=108875 GN=LOC110417965 PE=3 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 49/140 (35.00%), Postives = 69/140 (49.29%), Query Frame = 0
Query: 28 VSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTT------------- 87
V GP A++ A R+N T DPIAA F S+FM D P T P +N+T
Sbjct: 38 VGGPEPTAVRVA-GRSNFTGQDPIAATFGSIFMMDNPLTVTPNINSTLVGRAQGMYAMSS 97
Query: 88 ------LLMSLTFARSGGP----TTAAHSASAAESDRERSP--GNAGR-RRDVGFLAGLT 141
LLM+LT+A + GP T + + ++ P G G+ R G+ L
Sbjct: 98 QQKEFSLLMTLTYAFTSGPYNGSTFSVLGRNPVMNEVREMPVVGGTGKFRLARGYC--LA 157
BLAST of Sed0007680 vs. ExPASy TrEMBL
Match:
A0A7J0H1V1 (Dirigent protein OS=Actinidia rufa OX=165716 GN=Acr_26g0002310 PE=3 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 0
Query: 28 VSGPNAAAIQAAVWRTNCTASDPIAAVFRSVFMTDTPFTAAPELNTT------------- 87
V GPN A++ A R+N ++ DPIAA+F S+F+ D P TA+P+LN+T
Sbjct: 38 VGGPNPTAVRVA-GRSNFSSPDPIAAMFGSIFVIDNPLTASPDLNSTLTGRAQGIYAMSS 97
Query: 88 ------LLMSLTFARSGGPTTAAHSASAAESDRERSP------GNAGRRRDVGFLAGLTR 141
LLM+LT+ GP + + ++ R G G R A L +
Sbjct: 98 QHNEFSLLMTLTYNFVSGPYNGSSFSIVGQNPVMREVREMPIIGGTGMFRLARGYA-LAK 157
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022135557.1 | 4.6e-17 | 45.81 | dirigent protein 22-like [Momordica charantia] | [more] |
| KAA0058015.1 | 9.5e-15 | 44.69 | dirigent protein 22-like [Cucumis melo var. makuwa] >TYJ98238.1 dirigent protein... | [more] |
| XP_031742018.1 | 2.3e-13 | 43.58 | dirigent protein 22-like [Cucumis sativus] >KGN63770.1 hypothetical protein Csa_... | [more] |
| KAG7023279.1 | 2.5e-07 | 41.61 | Dirigent protein 15, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6589590.1 | 7.3e-07 | 40.94 | Dirigent protein 15, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C315 | 2.2e-17 | 45.81 | Dirigent protein OS=Momordica charantia OX=3673 GN=LOC111007482 PE=3 SV=1 | [more] |
| A0A5D3BJ74 | 4.6e-15 | 44.69 | Dirigent protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G001... | [more] |
| A0A0A0LPF3 | 1.1e-13 | 43.58 | Dirigent protein OS=Cucumis sativus OX=3659 GN=Csa_1G015640 PE=3 SV=1 | [more] |
| A0A6J1AHG7 | 2.8e-04 | 35.00 | Dirigent protein OS=Herrania umbratica OX=108875 GN=LOC110417965 PE=3 SV=1 | [more] |
| A0A7J0H1V1 | 3.7e-04 | 34.53 | Dirigent protein OS=Actinidia rufa OX=165716 GN=Acr_26g0002310 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
