Sed0007613 (gene) Chayote v1

Overview


Name	Sed0007613
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG10: 33259814 .. 33262332 (-)
RNA-Seq Expression	Sed0007613
Synteny	Sed0007613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAACCACACAACACAATCTAAGATTTCCAAATGGCATTGTTTGATAGGATAGCTCACGTTATCCAAAGCATGCAATAGGAGAGACCAACTGAATGGCCAAATCTGCCACGTCACCATCCTCCACCAATCACAACACTTCATTGGATTTCTCAGCTCCTCTCCAAACCAATAACCAATCACAAACCTGAATCCTACGTGGCATGTCGAAGTCCACTAGAATCAACCATATAGCATCTTCAACCTCCACATCTAGTGTTCACCATTTACACAAAATTTTCCATTCTCCACTCTTGGCTTCTGCTTCTTTGGCTATGGCTTCCCTAGCAGCCTCCACCGCCGCCGCCTCCCTCGGGGTTTCGGAAATGCTGAGGAATCCCCTCAGCTTTTCCGGAACTTCGGGGAGGTTGGCCCCCTCGGCTTCTAATCCCATGGCCTCCAAGACTGTTGCATTTTTTAAGAAGAAGCCGGGTGTCGCTCCCAAGGCAAAGCCCTCCGCCGCCGCCCCGGTCGACGACGAGCTCGCCAAGTGGTATGGTAAGTTCAATAATCTCATTCTCTTCTTTCTCACTTTAATGAAAATTGTTCATAATCTATGATGACTTTAGTACGTTAATTTGGTCTTCTTTTTTCAAATTCTAGTTTATTTAGTTCTGTTACAAATTTATCATTTTTATATAATATTGAATTATTTTATGACTTTTATTCATCAAATACTTTCATATTTCTAGTTAAATTTATAATGTTTTTTCCTTAAGAAATAATTAGTAGATGCAAAGGGCTGCCTTATAATTAGAGGAGATGAACTAAATAATTTCTTTCTTTAAACCCCATGTTGATTATGTTTGTTGGCACTAATTAGGTCCTGACAGAAGGATTTTCTTGCCCGATGGGCTGTTGGACCGATCCGAAATCCCTGAGTACTTGAACGGAGAAGTCCCCGGAGAGTATGTCTCTATTTCCTGCCTTGTTTGATAATCATTTTGTTTTCTGAAAACTAGAAACAAGTATAGTTTTTGAAATATCAAACGAGTTCTTAATTATTTTGAGAATCAGCTGAAGTGTACATGAACTCGAACTTATCGTTTTCGTTTGGTTAATTGCAGCTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGATTTCAGCAAGTAATTAATATAATTTCTCTATTGATGTACCAAACAAAGACCATAATTTGTTGAATTTATATGAACTAAGAAAAAGTGTGAATGTTTGTTTGGCAGATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAGTACGGCGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGGTCCAATTTTCAACACTAATTAACAAAAAGATTCATGAGCTACTTCTCTCGTCGTCAATTATTTTGTAATTAGAATCACATGTTGTCTGTTATAGTATCATAGCTCATAAGATCCAAATGAGTATTCGGTCCAAAAAAGAAAGAAAAAAGCATAACATTTTTCAAGATCCCTATAATTCAAACTGGTATTCAGTAAAGAAAAAGGAAATTGGAATTTGATTAAGAAGAATGAACCTAGTTAGAAACTTATAAACTATCTTTGAGAGGGTGATGTTGAAGATTTTCATTTGATCTCAATTTTTAATAAGATACATGGTCTATTCGTTAATTGTCAATTGATTTTGAGATAAAACTTATGTTCGTCTATGTGGAATGTAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTTGTTCTCGCGGTCATTGCCGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCACCAATGGCTTGGTAAGTTATTAATCAAAGTTTCATCAATAAATTCACCATTAATTAAGAAAATCTTCATTTTATTGTATTTACATTTACTCTCTACCATGTTTGAAAAACTTAGAAGAAAAGCATTGTTGGTTTAAGAGATATGATGGTGTTGTTTTGTAGAACCTTGAGGACAAGCTTCACCCGGGAGGGCCATTTGACCCGTTGGGGCTGGCAGACGATCCCGACCAGGCGGCAATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCGATGTTTGCGATGCTCGGGTTTTTCATCCAGGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTAAGTGACCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAAAATTAATTAATGCAAATCGTTTAATGTGTTTGTAAAAATTTGTATTGAGGCTATTTGTAGCCCCTCACTCTCAGTGCATTTGAAAGTCATATGAACAAGAGTTTTCATCAAATTTTCTATGAACTTGTGTGTGTGTTCAATTGGCAGAGAATTGGTGATGAATTTTGATAAGAACCGATCTCTATTACGATATCAAAATAATAGAATTATAAGATAAACC

mRNA sequence

GAAGAAACCACACAACACAATCTAAGATTTCCAAATGGCATTGTTTGATAGGATAGCTCACGTTATCCAAAGCATGCAATAGGAGAGACCAACTGAATGGCCAAATCTGCCACGTCACCATCCTCCACCAATCACAACACTTCATTGGATTTCTCAGCTCCTCTCCAAACCAATAACCAATCACAAACCTGAATCCTACGTGGCATGTCGAAGTCCACTAGAATCAACCATATAGCATCTTCAACCTCCACATCTAGTGTTCACCATTTACACAAAATTTTCCATTCTCCACTCTTGGCTTCTGCTTCTTTGGCTATGGCTTCCCTAGCAGCCTCCACCGCCGCCGCCTCCCTCGGGGTTTCGGAAATGCTGAGGAATCCCCTCAGCTTTTCCGGAACTTCGGGGAGGTTGGCCCCCTCGGCTTCTAATCCCATGGCCTCCAAGACTGTTGCATTTTTTAAGAAGAAGCCGGGTGTCGCTCCCAAGGCAAAGCCCTCCGCCGCCGCCCCGGTCGACGACGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATTTTCTTGCCCGATGGGCTGTTGGACCGATCCGAAATCCCTGAGTACTTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGATTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAGTACGGCGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTTGTTCTCGCGGTCATTGCCGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCACCAATGGCTTGAACCTTGAGGACAAGCTTCACCCGGGAGGGCCATTTGACCCGTTGGGGCTGGCAGACGATCCCGACCAGGCGGCAATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCGATGTTTGCGATGCTCGGGTTTTTCATCCAGGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTAAGTGACCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAAAATTAATTAATGCAAATCGTTTAATGTGTTTGTAAAAATTTGTATTGAGGCTATTTGTAGCCCCTCACTCTCAGTGCATTTGAAAGTCATATGAACAAGAGTTTTCATCAAATTTTCTATGAACTTGTGTGTGTGTTCAATTGGCAGAGAATTGGTGATGAATTTTGATAAGAACCGATCTCTATTACGATATCAAAATAATAGAATTATAAGATAAACC

Coding sequence (CDS)

ATGTCGAAGTCCACTAGAATCAACCATATAGCATCTTCAACCTCCACATCTAGTGTTCACCATTTACACAAAATTTTCCATTCTCCACTCTTGGCTTCTGCTTCTTTGGCTATGGCTTCCCTAGCAGCCTCCACCGCCGCCGCCTCCCTCGGGGTTTCGGAAATGCTGAGGAATCCCCTCAGCTTTTCCGGAACTTCGGGGAGGTTGGCCCCCTCGGCTTCTAATCCCATGGCCTCCAAGACTGTTGCATTTTTTAAGAAGAAGCCGGGTGTCGCTCCCAAGGCAAAGCCCTCCGCCGCCGCCCCGGTCGACGACGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATTTTCTTGCCCGATGGGCTGTTGGACCGATCCGAAATCCCTGAGTACTTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGATTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAGTACGGCGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTTGTTCTCGCGGTCATTGCCGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCACCAATGGCTTGAACCTTGAGGACAAGCTTCACCCGGGAGGGCCATTTGACCCGTTGGGGCTGGCAGACGATCCCGACCAGGCGGCAATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCGATGTTTGCGATGCTCGGGTTTTTCATCCAGGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTAAGTGACCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA

Protein sequence

MSKSTRINHIASSTSTSSVHHLHKIFHSPLLASASLAMASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL

Homology

[Close]

BLAST of Sed0007613 vs. NCBI nr
Match: XP_038889943.1 (chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida])

HSP 1 Score: 543.5 bits (1399), Expect = 1.3e-150
Identity = 267/291 (91.75%), Postives = 274/291 (94.16%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFSG S R APSAS+P   KTVA F KKP    K KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AVIAEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. NCBI nr
Match: XP_022973438.1 (chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima])

HSP 1 Score: 541.2 bits (1393), Expect = 6.2e-150
Identity = 265/291 (91.07%), Postives = 274/291 (94.16%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLS SG S R A SAS+P+ SK VA F KKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV+AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. NCBI nr
Match: KAG7037190.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.4 bits (1391), Expect = 1.1e-149
Identity = 265/291 (91.07%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFSG S R A SAS+P+ SK VA F KKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +P +DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. NCBI nr
Match: XP_022932496.1 (chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 539.7 bits (1389), Expect = 1.8e-149
Identity = 265/291 (91.07%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFSG S R A SAS+P+ SK VA F KKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +P +DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. NCBI nr
Match: KAG6607551.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 538.1 bits (1385), Expect = 5.3e-149
Identity = 264/291 (90.72%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFSG S R A SAS+P+ SK VA F KKP   PK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPTPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +P +DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot
Match: Q9XF89 (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 6.5e-134
Identity = 239/282 (84.75%), Postives = 250/282 (88.65%), Query Frame = 0


Query: 48  ASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFF-KKKPGVAPKAKPSAAAPVDDE 107
           ASLGVSEML  PL+F   S   AP AS+P   KTVA F KKKP  AP AK  A +   DE
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKP--AP-AKSKAVSETSDE 61

Query: 108 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHA 167
           LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHA
Sbjct: 62  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 121

Query: 168 RWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLVLAVIAE 227
           RWAMLGAAGFIIPEA NKYGANCGPEAVWFKTGALLLDGNTLNYFG NIPINLVLAV+AE
Sbjct: 122 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 181

Query: 228 VVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLG 287
           VVL+GGAEYYRITNGL+ EDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLG
Sbjct: 182 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 241

Query: 288 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-58
Identity = 130/269 (48.33%), Postives = 166/269 (61.71%), Query Frame = 0


Query: 50  LGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAK 109
           +  S M  +  +F+G + +L+PS+S    +  V   K     A KAKP+++       + 
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRK----TATKAKPASSG------SP 60

Query: 110 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 169
           WYGPDR  +L        E P YL GE PGDYG+D  GLS  PE F+K +  E+IH RWA
Sbjct: 61  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 120

Query: 170 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-E 229
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +    +LA+ A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 180

Query: 230 VVLVGGAEYYRITNGL--NLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 289
           VVL+G  E YRI  G    + D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M
Sbjct: 181 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 240

Query: 290 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
            GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 FGFFVQAIVTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot
Match: P27517 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta OX=3047 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-58
Identity = 117/219 (53.42%), Postives = 144/219 (65.75%), Query Frame = 0


Query: 101 APVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQA 160
           A V     ++YGPDR  FL  G    ++ PEYL GE PGDYG+D  GLS  P+ F++Y+ 
Sbjct: 24  ATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYRE 83

Query: 161 FELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI--- 220
            ELIHARWA+LGA G + PE  ++Y      E VWFK GA +     LNY GN   I   
Sbjct: 84  IELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQ 143

Query: 221 NLVLAVIAEVVLVGGAEYYRITNG----LNLEDKLHPGGPFDPLGLADDPDQAAILKVKE 280
           +++  +  +VVL+G AE YR   G    L+  D L+PGGPFDPLGLADDPD  A LKVKE
Sbjct: 144 SIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 203

Query: 281 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGN 313
           IKNGRLAMF+ LGFF+QA VTG+GPV+NL  HL+DP  N
Sbjct: 204 IKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240

[Close]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot
Match: P15193 (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris OX=3349 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-57
Identity = 119/223 (53.36%), Postives = 147/223 (65.92%), Query Frame = 0


Query: 96  KPSAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF 155
           K S AA +D   + WYGPDR ++L        E P YL GE PGDYG+D  GLS  PE F
Sbjct: 51  KKSVAASID---SPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 110

Query: 156 SKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN- 215
           +K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G+  
Sbjct: 111 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQ 170

Query: 216 -IPINLVLAVIA-EVVLVGGAEYYRITNGL--NLEDKLHPGGPFDPLGLADDPDQAAILK 275
            I    +LA+ A +V+L+G  E YR+  G    + D ++PGG FDPLGLADDPD  A LK
Sbjct: 171 LIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELK 230

Query: 276 VKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
           VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 231 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266

[Close]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot
Match: P12330 (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB1R PE=2 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-57
Identity = 129/256 (50.39%), Postives = 161/256 (62.89%), Query Frame = 0


Query: 63  SGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAKWYGPDRRIFLPDG 122
           S    R APS S+ +  +     +K    A K KP+A++      + WYG DR ++L  G
Sbjct: 10  SPVMARAAPSTSSALFGEARITMRK---TAAKPKPAASSG-----SPWYGADRVLYL--G 69

Query: 123 LLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAF 182
            L   E P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWAMLGA G + PE  
Sbjct: 70  PLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 129

Query: 183 NKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-EVVLVGGAEYYRIT 242
            + G   G EAVWFK G+ +     L+Y GN   I    +LA+ A +VVL+G  E YRI 
Sbjct: 130 ARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 189

Query: 243 NGL--NLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEG 302
            G    + D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 190 GGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 249

Query: 303 PVENLAKHLSDPFGNN 314
           P+ENLA HL+DP  NN
Sbjct: 250 PLENLADHLADPVNNN 253

[Close]

BLAST of Sed0007613 vs. ExPASy TrEMBL
Match: A0A6J1ID20 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471983 PE=3 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 3.0e-150
Identity = 265/291 (91.07%), Postives = 274/291 (94.16%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLS SG S R A SAS+P+ SK VA F KKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV+AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. ExPASy TrEMBL
Match: A0A6J1EWI5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438899 PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 8.7e-150
Identity = 265/291 (91.07%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFSG S R A SAS+P+ SK VA F KKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SA +P +DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AV AEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Sed0007613 vs. ExPASy TrEMBL
Match: A0A0A0KXR5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G646700 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.4e-147
Identity = 264/291 (90.72%), Postives = 271/291 (93.13%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSF   S R APS S P   KTVA F KKP    K KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           SAA+PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AVIAEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

[Close]

BLAST of Sed0007613 vs. ExPASy TrEMBL
Match: A0A6J1DTI7 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022982 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.4e-147
Identity = 267/292 (91.44%), Postives = 275/292 (94.18%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSF G S R APSAS+ +  KTVA F KKP  A KAKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFGGGSPRSAPSASSSVTVKTVALFGKKP--AAKAKP 60

Query: 98  SAA-APVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFS 157
           SAA +PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFS
Sbjct: 61  SAAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFS 120

Query: 158 KYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIP 217
           KYQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIP
Sbjct: 121 KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP 180

Query: 218 INLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKN 277
           INL++AVIAEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKN
Sbjct: 181 INLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKN 240

Query: 278 GRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           GRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVISGN ERVPTL
Sbjct: 241 GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERVPTL 290

[Close]

BLAST of Sed0007613 vs. ExPASy TrEMBL
Match: A0A1S3CBI9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498611 PE=3 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 3.1e-147
Identity = 263/291 (90.38%), Postives = 271/291 (93.13%), Query Frame = 0


Query: 38  MASLAASTAAASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKP 97
           MASLAASTAAASLGVSEMLRNPLSFS  S    PSAS+P   KTVA F KKP    K KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSA--PPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 98  SAAAPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 157
           + A+PV+DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  APASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 158 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 217
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 218 NLVLAVIAEVVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 277
           NL++AVIAEVVLVGGAEYYRI NGLN EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 278 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           RLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289

[Close]

BLAST of Sed0007613 vs. TAIR 10
Match: AT4G10340.1 (light harvesting complex of photosystem II 5 )

HSP 1 Score: 478.4 bits (1230), Expect = 4.6e-135
Identity = 239/282 (84.75%), Postives = 250/282 (88.65%), Query Frame = 0


Query: 48  ASLGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFF-KKKPGVAPKAKPSAAAPVDDE 107
           ASLGVSEML  PL+F   S   AP AS+P   KTVA F KKKP  AP AK  A +   DE
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKP--AP-AKSKAVSETSDE 61

Query: 108 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHA 167
           LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHA
Sbjct: 62  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 121

Query: 168 RWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLVLAVIAE 227
           RWAMLGAAGFIIPEA NKYGANCGPEAVWFKTGALLLDGNTLNYFG NIPINLVLAV+AE
Sbjct: 122 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 181

Query: 228 VVLVGGAEYYRITNGLNLEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLG 287
           VVL+GGAEYYRITNGL+ EDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLG
Sbjct: 182 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 241

Query: 288 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 329
           FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Sed0007613 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 219.2 bits (557), Expect = 5.0e-57
Identity = 123/270 (45.56%), Postives = 161/270 (59.63%), Query Frame = 0


Query: 50  LGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAK 109
           +  S M  +  +F+G + +L+P+AS  + S  V   K           + A P     + 
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRK-----------TVAKPKGPSGSP 60

Query: 110 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 169
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 170 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-E 229
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +    +LA+ A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 230 VVLVGGAEYYRITNGLNL---EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 289
           V+L+G  E YR+     L   ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 290 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
           M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Sed0007613 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 218.4 bits (555), Expect = 8.6e-57
Identity = 123/270 (45.56%), Postives = 160/270 (59.26%), Query Frame = 0


Query: 50  LGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAK 109
           +  S M  +  +F+G +  L+P+AS  + S  V   K           + A P     + 
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRK-----------TVAKPKGPSGSP 60

Query: 110 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 169
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 170 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-E 229
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +    +LA+ A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 230 VVLVGGAEYYRITNGLNL---EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 289
           V+L+G  E YR+     L   ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 290 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
           M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Sed0007613 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 218.4 bits (555), Expect = 8.6e-57
Identity = 123/270 (45.56%), Postives = 160/270 (59.26%), Query Frame = 0


Query: 50  LGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAK 109
           +  S M  +  +F+G +  L+P+AS  + S  V   K           + A P     + 
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRK-----------TVAKPKGPSGSP 60

Query: 110 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 169
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 170 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-E 229
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +    +LA+ A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 230 VVLVGGAEYYRITNGLNL---EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 289
           V+L+G  E YR+     L   ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 290 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
           M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Sed0007613 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-55
Identity = 120/270 (44.44%), Postives = 157/270 (58.15%), Query Frame = 0


Query: 50  LGVSEMLRNPLSFSGTSGRLAPSASNPMASKTVAFFKKKPGVAPKAKPSAAAPVDDELAK 109
           +  S M  +  + +G + +L+P+AS    +  +   K      P   P            
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSP------------ 60

Query: 110 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 169
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 170 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLVLAVIA-E 229
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +    +LA+ A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 230 VVLVGGAEYYRITNGLNL---EDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 289
           V+L+G  E YR+     L   ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 290 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 314
           M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPLENLADHLADPVNNN 254

The following BLAST results are available for this feature:

BLAST of Sed0007613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889943.1	1.3e-150	91.75	chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida]	[more]
XP_022973438.1	6.2e-150	91.07	chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima]	[more]
KAG7037190.1	1.1e-149	91.07	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_022932496.1	1.8e-149	91.07	chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata]	[more]
KAG6607551.1	5.3e-149	90.72	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of Sed0007613 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF89	6.5e-134	84.75	Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P07369	1.2e-58	48.33	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P27517	1.2e-58	53.42	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella ter...	[more]
P15193	1.7e-57	53.36	Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvest...	[more]
P12330	2.2e-57	50.39	Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica...	[more]

BLAST of Sed0007613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID20	3.0e-150	91.07	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EWI5	8.7e-150	91.07	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0KXR5	1.4e-147	90.72	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1DTI7	1.4e-147	91.44	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3CBI9	3.1e-147	90.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0007613 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10340.1	4.6e-135	84.75	light harvesting complex of photosystem II 5	[more]
AT1G29930.1	5.0e-57	45.56	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	8.6e-57	45.56	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	8.6e-57	45.56	chlorophyll A/B-binding protein 2	[more]
AT2G34430.1	2.8e-55	44.44	light-harvesting chlorophyll-protein complex II subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 130..291 e-value: 1.2E-46 score: 159.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 117..328 e-value: 2.3E-89 score: 300.6
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 38..328
None	No IPR available	PANTHER	PTHR21649:SF104	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 38..328
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 110..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007613.1	Sed0007613.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding