Sed0007604 (gene) Chayote v1

Overview
NameSed0007604
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
LocationLG11: 26702071 .. 26705712 (-)
RNA-Seq ExpressionSed0007604
SyntenySed0007604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAATAATAAAACCCTACGTCCGTACAATCCGCTTCATATTGTGCTCTCCATCTTTGCCCTCGCCGGAACGCGTCCACCGTCTTCTGCGATTAAGCTTCGGTACGTCTTCGATTCGACACCACTTCGTATTCTCTATTTGTATTGATTTCCGATTGGGCGTGTTTCATACTGTTTTCGAGCTTTTTTAGATTTGTTGCCAATGGCGGTGGGGTTTTTCAGTCTGTTTTTACTTGGGTTCTTTAATTTTTTTTTTTTTTTTTAGGGGTTTTCATAGAACGCAATGATTTCATCAACTCTTCCAACCCTTGTTCTTGGGATATATATATATTTTTTTGGGTTATGTTTGTTTTCTGGGAACGAATTAAGTTCATTGTATTTTATGGGAATGGTTTTTTGTTCTTGTTTAGGATTACTATGCTAATATAGTGAAAGTGATGATTAGCGTAGAATTTGTTTTCTGGATCTTCTTATTGGTTCTATGATTTTTCAAACTCTCTGAAAAATTGAAGAGTGTTTCTTGCATCAATTCGAGATGGTTGTTGGGACAGGGGATTGGCTCATGGCTGGGGTTATTACTAAGTTTCTAGTTCATTTAGTGTTATGATCAAACCATTTGTAAGATTTGGTATTTCCTATCAAACCAAATGTTTATATGAGGGATGCAAGCACTTTTCTTTAAATCAAAGTTCTAATTCTGTTTTTTTATCTTAATTCTGATGATTTGCTTGTTTTAGTTCTTGAGCTTTTGAATTTGTAGTTCATGAAGGCTTAATATTTCATTCTCTCCAACAATTTTTTTAAAAAAATTTTGCACTCTAAAGAGGATTGACATTCACGTATTGTAATGTACTGATGAGCTTGAATACCCAACCCCAAAATACAAAGGTTTGGTTAGGTTCGTTGCCTCTTTAATTGGGTTGTGTTGGGTTTGAAAAATGACCAACCCGAATTTCTTCGCAGGGGTTATAAACCTCCTTATTTGCTTCTTCTACAGCTTTTTTTATTTGGGAACTATATTTACCAAATCCCTTTTTGCCATCATAACTTCACCACCTTCTTGAGGCTCTACTTTTATTTTCATGTTTTAGCATTGTTTTGATCTCTTAGTTGTGTAAATTGAACTTCTAATGATTCTAACTTTTCTCTGTGTGTGTGTACATTGTTCGTTCTAGCTCCTGGAGAAGCAGCTAGGGGCCGTTCATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGGTTTACATACTATACTCAAATTAGTTACTTTTTGTTTTTTTTTATTTGTTTTGGATTCTTGATAGATCACCAATGACTCGGATGAACGAGCTCAATTGGTTTGCAATGCTTCAATTTATTGAATGTAATCCTATTACATTTTTTTGTAGTTGATTTTTTCTTCATGTTTATCCAAGTAAAAATGTAAAAACCATCGATTAATTTTTTTTTTAATTTCAAGTTTCTTTTCTTTTATCGTACTAGAACATATTTCTTTTCTTTTACCTTAATAATGTTGTTTCGTTCTACACTTGTAGTTTGTATTGAAGCATATACATGAAATTGTTTTAGAATTTGATGGTTTACAATTTCTCGTAGCTCGCCCAAACAGTCACTGATATCAAAAAGAAAAAAAAAGAAATTGTTTTAGAATTTGATGGCTCTGCTTTATGTTCTAATGGTTTTGTTGAAAGAAGTGTGCATCTTATTGTCTTCTCGTATTGAAATTGTAATAATTGGAATCTATGTCCATTGTTTTCTTCATGATTTGCGCATTGAAGCCGTACAATGCTGTTGAGCAATTGTTGTTTTAATATTTTATACACTCTTTAAATGGACATCTCTAACCTTTGTGGTGCCTCTTATTTCAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGTATGGCTCTTAAGTTTTAAATATTTATTATTCCCATGGTTGTTATATTTCTAGGTCTAAAAGTATCTGTGTGCAACGCAACATTGGCAATGTTAACTTTAACATACTACCTTAGTGATATCTCCTAGAATTGTTTCTTGATTAATATATAATGTTCACTAGGATAGGTAAATCAATAGCCCTACCTGACTTTGGAAATTCATATTGGATTGAAAAAGGAATTGTGGCACCAAGTATATAGGTAAGATCTCGGAGATCGAAGAGGTTATGAGTTCAATTCACGATGACCACTTATCTAAAAATTAATTTTATAGGTTCTTACAACTAAAATGTTGTAAGGTTAGACTGTATGTTTCACAAAAATAGTAGAGGTGCACATAAGCTGGACCAAACACTCATATATATATATATATATATAAAGAATTGTGGGACCCTTAAATCATATGCAAATTTTTTATTATCTAGTTTTGATGTATGCTCCCTCCTTAATCCATGATGGTCACGTAGTTAGGAATTAATGTTCTATTAGCTATATATATATATACTACTATTTGTTTGTCAGACATCCAAGTAATCTATTGATCTGGAATCTTCATGTCACCATGTGCAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGTAATAGAAGAAAATAAGTCTGTTGATATGATATTTTGTTTGAGATTTATGAAATCCACTAATATTAAGCTGTCAACAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACAAAAAAAAAAAACTCTAATGCTTTGATCTTTAGGCTTCCTTTCTTTTTTTGGGAAACTTACTGCACCACTCAAATTCAAAAAATAATTATAAATATAGACACTTTTAAAAAAAATTAGCAATTATAGTCATAGGTGTTAATAATATTGTATTATTAACAATCATATACATGTTGAATTATACTAAACCACCAACCAATCCAAAAGCCTAAACTTATGGATTGGAGCAAATTTAATTATATCAACCAACACTCTCTCCACTTATGGGTTTTGAAATTTGAAAAATGCCCTACAAGTGGAATTTAATTTTAATATAGGAGAGGAAATGACTTGACAAGAATTTGAACTCATGACCTCCTACTTTGATACCATGTTGAATTATGTTAAACCACCATTCAATCTAAAAGCCTAAACTTATGGATTGTGGCAAATTTAATTATATCAATAAACAATACAATATTGTATTAATAATCAATAAGTATTAATAAAACAGTATTGAACTATATCTATAATCATGGTTTCAAATCTGACTATATTAAAAAGAGTCCTAAATTTATTCTGAGTGTGGGTTCCAATAAAAATGCAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGAAATCCTTTATTATTGTTCATCTTGAATTATGCCTGTTGTAGACACCATAGTTTATCCTATTTTACTGGGGGGAAATTCCTTTAATTATTAGGATAGCTCCCATTGTAATCTTGAAAGCTTTGATTATTTTGTTTCTTAAACTTGATCATTATGATTAAGTATCGAAATTCATTTCTTGAG

mRNA sequence

GAAAAAAATAATAAAACCCTACGTCCGTACAATCCGCTTCATATTGTGCTCTCCATCTTTGCCCTCGCCGGAACGCGTCCACCGTCTTCTGCGATTAAGCTTCGCTCCTGGAGAAGCAGCTAGGGGCCGTTCATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGAAATCCTTTATTATTGTTCATCTTGAATTATGCCTGTTGTAGACACCATAGTTTATCCTATTTTACTGGGGGGAAATTCCTTTAATTATTAGGATAGCTCCCATTGTAATCTTGAAAGCTTTGATTATTTTGTTTCTTAAACTTGATCATTATGATTAAGTATCGAAATTCATTTCTTGAG

Coding sequence (CDS)

ATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGA

Protein sequence

MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of Sed0007604 vs. NCBI nr
Match: XP_004143007.1 (DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736324.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736325.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736326.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_018548 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 146

[Close]
BLAST of Sed0007604 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. NCBI nr
Match: XP_008445334.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445336.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445337.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445338.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKSK+SAKE+ G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE+IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC  CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 9   SFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLS 68

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 69  MEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

[Close]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q6MFY5 (DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Polr1h PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-10
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0 

Query: 6   QHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGISLI 65
           Q D  FC  CG++L     +  V CP C      ++  GK +  +V   ++   + +S+ 
Sbjct: 11  QSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVD 70

Query: 66  DEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           +  + Q     RRC +CG++   + +RQMRSADEGQT FYTC  C  Q +E+
Sbjct: 71  EGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKED 122

[Close]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKSK+SAKE+ G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE+IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAK +IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-54
Identity = 105/116 (90.52%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYS  HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Sed0007604 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-32
Identity = 66/118 (55.93%), Postives = 88/118 (74.58%), Query Frame = 0 

Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           M  SR+ +FLFCNLCGTML   STKY ECP CK+ ++AK++I KEI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIDEE---KMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]
BLAST of Sed0007604 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
          M  SR+ D LFCNLCGTML   STKY ECP C++ ++ KE+I K ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]
BLAST of Sed0007604 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-13
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1  MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAE 54
          M  SR+ D LFCNLCGTML   STKY ECP C++ ++ KE+I K ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]
BLAST of Sed0007604 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 34/114 (29.82%), Postives = 55/114 (48.25%), Query Frame = 0 

Query: 11  FCNLCGTMLT---------CCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGI 70
           FC  CG +L           CST    CP+    Q   E+  K++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCST----CPYVAYIQRQVEIKKKQLL-------VKKSIEA 62

Query: 71  SLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of Sed0007604 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 33/114 (28.95%), Postives = 56/114 (49.12%), Query Frame = 0 

Query: 11  FCNLCGTMLT---------CCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGI 70
           FC  CG +L           CST    CP+  + +   E+  K++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCST----CPYVANIERRVEIKKKQLL-------VKKSIEP 62

Query: 71  SLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:
BLAST of Sed0007604 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143007.14.5e-5591.38DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031... [more]
KAG6598510.11.7e-5491.38DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub... [more]
XP_023546814.11.7e-5491.38DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_008445334.13.8e-5491.38PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_0... [more]
XP_022144336.13.8e-5491.38DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1RMP05.5e-1135.09DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2... [more]
Q5TM505.5e-1135.09DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ... [more]
Q9P1U09.3e-1135.09DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE... [more]
Q1XHV89.3e-1135.09DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H... [more]
Q6MFY57.9e-1034.82DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Pol... [more]
BLAST of Sed0007604 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKC42.2e-5591.38DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
A0A1S3BBZ41.9e-5491.38DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
A0A6J1CTE61.9e-5491.38DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140... [more]
A0A6J1KC194.2e-5491.38DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ... [more]
A0A6J1HDS45.4e-5490.52DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302... [more]
BLAST of Sed0007604 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G25940.19.8e-3255.93TFIIB zinc-binding protein [more]
AT1G20065.11.5e-1659.68FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G20065.27.8e-1358.49FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G01210.11.1e-0629.82DNA-directed RNA polymerase, subunit M, archaeal [more]
AT4G07950.11.9e-0628.95DNA-directed RNA polymerase, subunit M, archaeal [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 76..115
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 77..112
e-value: 8.5E-16
score: 57.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 74..114
score: 12.826397
NoneNo IPR availableGENE3D2.20.25.10coord: 62..116
e-value: 1.8E-16
score: 61.3
NoneNo IPR availablePANTHERPTHR11239:SF19DNA-DIRECTED RNA POLYMERASE SUBUNITcoord: 1..114
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 55..116
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 9..116
e-value: 3.7E-25
score: 86.6
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 76..116
e-value: 1.62218E-19
score: 73.3912

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007604.1Sed0007604.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding