Sed0007604 (gene) Chayote v1

Overview


Name	Sed0007604
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit
Location	LG11: 26702071 .. 26705712 (-)
RNA-Seq Expression	Sed0007604
Synteny	Sed0007604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAATAATAAAACCCTACGTCCGTACAATCCGCTTCATATTGTGCTCTCCATCTTTGCCCTCGCCGGAACGCGTCCACCGTCTTCTGCGATTAAGCTTCGGTACGTCTTCGATTCGACACCACTTCGTATTCTCTATTTGTATTGATTTCCGATTGGGCGTGTTTCATACTGTTTTCGAGCTTTTTTAGATTTGTTGCCAATGGCGGTGGGGTTTTTCAGTCTGTTTTTACTTGGGTTCTTTAATTTTTTTTTTTTTTTTTAGGGGTTTTCATAGAACGCAATGATTTCATCAACTCTTCCAACCCTTGTTCTTGGGATATATATATATTTTTTTGGGTTATGTTTGTTTTCTGGGAACGAATTAAGTTCATTGTATTTTATGGGAATGGTTTTTTGTTCTTGTTTAGGATTACTATGCTAATATAGTGAAAGTGATGATTAGCGTAGAATTTGTTTTCTGGATCTTCTTATTGGTTCTATGATTTTTCAAACTCTCTGAAAAATTGAAGAGTGTTTCTTGCATCAATTCGAGATGGTTGTTGGGACAGGGGATTGGCTCATGGCTGGGGTTATTACTAAGTTTCTAGTTCATTTAGTGTTATGATCAAACCATTTGTAAGATTTGGTATTTCCTATCAAACCAAATGTTTATATGAGGGATGCAAGCACTTTTCTTTAAATCAAAGTTCTAATTCTGTTTTTTTATCTTAATTCTGATGATTTGCTTGTTTTAGTTCTTGAGCTTTTGAATTTGTAGTTCATGAAGGCTTAATATTTCATTCTCTCCAACAATTTTTTTAAAAAAATTTTGCACTCTAAAGAGGATTGACATTCACGTATTGTAATGTACTGATGAGCTTGAATACCCAACCCCAAAATACAAAGGTTTGGTTAGGTTCGTTGCCTCTTTAATTGGGTTGTGTTGGGTTTGAAAAATGACCAACCCGAATTTCTTCGCAGGGGTTATAAACCTCCTTATTTGCTTCTTCTACAGCTTTTTTTATTTGGGAACTATATTTACCAAATCCCTTTTTGCCATCATAACTTCACCACCTTCTTGAGGCTCTACTTTTATTTTCATGTTTTAGCATTGTTTTGATCTCTTAGTTGTGTAAATTGAACTTCTAATGATTCTAACTTTTCTCTGTGTGTGTGTACATTGTTCGTTCTAGCTCCTGGAGAAGCAGCTAGGGGCCGTTCATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGGTTTACATACTATACTCAAATTAGTTACTTTTTGTTTTTTTTTATTTGTTTTGGATTCTTGATAGATCACCAATGACTCGGATGAACGAGCTCAATTGGTTTGCAATGCTTCAATTTATTGAATGTAATCCTATTACATTTTTTTGTAGTTGATTTTTTCTTCATGTTTATCCAAGTAAAAATGTAAAAACCATCGATTAATTTTTTTTTTAATTTCAAGTTTCTTTTCTTTTATCGTACTAGAACATATTTCTTTTCTTTTACCTTAATAATGTTGTTTCGTTCTACACTTGTAGTTTGTATTGAAGCATATACATGAAATTGTTTTAGAATTTGATGGTTTACAATTTCTCGTAGCTCGCCCAAACAGTCACTGATATCAAAAAGAAAAAAAAAGAAATTGTTTTAGAATTTGATGGCTCTGCTTTATGTTCTAATGGTTTTGTTGAAAGAAGTGTGCATCTTATTGTCTTCTCGTATTGAAATTGTAATAATTGGAATCTATGTCCATTGTTTTCTTCATGATTTGCGCATTGAAGCCGTACAATGCTGTTGAGCAATTGTTGTTTTAATATTTTATACACTCTTTAAATGGACATCTCTAACCTTTGTGGTGCCTCTTATTTCAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGTATGGCTCTTAAGTTTTAAATATTTATTATTCCCATGGTTGTTATATTTCTAGGTCTAAAAGTATCTGTGTGCAACGCAACATTGGCAATGTTAACTTTAACATACTACCTTAGTGATATCTCCTAGAATTGTTTCTTGATTAATATATAATGTTCACTAGGATAGGTAAATCAATAGCCCTACCTGACTTTGGAAATTCATATTGGATTGAAAAAGGAATTGTGGCACCAAGTATATAGGTAAGATCTCGGAGATCGAAGAGGTTATGAGTTCAATTCACGATGACCACTTATCTAAAAATTAATTTTATAGGTTCTTACAACTAAAATGTTGTAAGGTTAGACTGTATGTTTCACAAAAATAGTAGAGGTGCACATAAGCTGGACCAAACACTCATATATATATATATATATATAAAGAATTGTGGGACCCTTAAATCATATGCAAATTTTTTATTATCTAGTTTTGATGTATGCTCCCTCCTTAATCCATGATGGTCACGTAGTTAGGAATTAATGTTCTATTAGCTATATATATATATACTACTATTTGTTTGTCAGACATCCAAGTAATCTATTGATCTGGAATCTTCATGTCACCATGTGCAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGTAATAGAAGAAAATAAGTCTGTTGATATGATATTTTGTTTGAGATTTATGAAATCCACTAATATTAAGCTGTCAACAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACAAAAAAAAAAAACTCTAATGCTTTGATCTTTAGGCTTCCTTTCTTTTTTTGGGAAACTTACTGCACCACTCAAATTCAAAAAATAATTATAAATATAGACACTTTTAAAAAAAATTAGCAATTATAGTCATAGGTGTTAATAATATTGTATTATTAACAATCATATACATGTTGAATTATACTAAACCACCAACCAATCCAAAAGCCTAAACTTATGGATTGGAGCAAATTTAATTATATCAACCAACACTCTCTCCACTTATGGGTTTTGAAATTTGAAAAATGCCCTACAAGTGGAATTTAATTTTAATATAGGAGAGGAAATGACTTGACAAGAATTTGAACTCATGACCTCCTACTTTGATACCATGTTGAATTATGTTAAACCACCATTCAATCTAAAAGCCTAAACTTATGGATTGTGGCAAATTTAATTATATCAATAAACAATACAATATTGTATTAATAATCAATAAGTATTAATAAAACAGTATTGAACTATATCTATAATCATGGTTTCAAATCTGACTATATTAAAAAGAGTCCTAAATTTATTCTGAGTGTGGGTTCCAATAAAAATGCAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGAAATCCTTTATTATTGTTCATCTTGAATTATGCCTGTTGTAGACACCATAGTTTATCCTATTTTACTGGGGGGAAATTCCTTTAATTATTAGGATAGCTCCCATTGTAATCTTGAAAGCTTTGATTATTTTGTTTCTTAAACTTGATCATTATGATTAAGTATCGAAATTCATTTCTTGAG

mRNA sequence

GAAAAAAATAATAAAACCCTACGTCCGTACAATCCGCTTCATATTGTGCTCTCCATCTTTGCCCTCGCCGGAACGCGTCCACCGTCTTCTGCGATTAAGCTTCGCTCCTGGAGAAGCAGCTAGGGGCCGTTCATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGAAATCCTTTATTATTGTTCATCTTGAATTATGCCTGTTGTAGACACCATAGTTTATCCTATTTTACTGGGGGGAAATTCCTTTAATTATTAGGATAGCTCCCATTGTAATCTTGAAAGCTTTGATTATTTTGTTTCTTAAACTTGATCATTATGATTAAGTATCGAAATTCATTTCTTGAG

Coding sequence (CDS)

ATGGCTTATTCTCGTCAACACGACTTTTTGTTTTGCAATTTGTGTGGAACCATGCTAACTTGTTGCTCAACGAAATATGTTGAGTGTCCTTTTTGCAAGTCTAAGCAAAGTGCAAAAGAGGTAATCGGTAAAGAAATAAGTTACACTGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTGATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAGAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAGACCACTTTCTACACATGCACCAAGTGCCACCATCAGACCAGAGAGAATTGA

Protein sequence

MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Homology

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BLAST of Sed0007604 vs. NCBI nr
Match: XP_004143007.1 (DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736324.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736325.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736326.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_018548 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 146

[Close]

BLAST of Sed0007604 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

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BLAST of Sed0007604 vs. NCBI nr
Match: XP_008445334.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445336.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445337.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445338.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKSK+SAKE+ G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE+IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

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BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC  CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 9   SFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLS 68

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 69  MEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

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BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 4   SRQHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGIS 63
           S Q D  FC+ CG++L     +  V C  C    + ++  GK +  +V   ++   + +S
Sbjct: 12  SFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMS 71

Query: 64  LIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           + +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 72  VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of Sed0007604 vs. ExPASy Swiss-Prot
Match: Q6MFY5 (DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Polr1h PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-10
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 6   QHDFLFCNLCGTMLTCCSTK-YVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGISLI 65
           Q D  FC  CG++L     +  V CP C      ++  GK +  +V   ++   + +S+ 
Sbjct: 11  QSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVD 70

Query: 66  DEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           +  + Q     RRC +CG++   + +RQMRSADEGQT FYTC  C  Q +E+
Sbjct: 71  EGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKED 122

[Close]

BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+ CSTKYVECP CKSK+SAKE+ G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAKE+IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTML+  STKYVECP CKS++SAK +IG+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-54
Identity = 105/116 (90.52%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           MAYS  HDFLFCNLCGTML+  STKYVECP CKS++SAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of Sed0007604 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-32
Identity = 66/118 (55.93%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 1   MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
           M  SR+ +FLFCNLCGTML   STKY ECP CK+ ++AK++I KEI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIDEE---KMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]

BLAST of Sed0007604 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLG 60
          M  SR+ D LFCNLCGTML   STKY ECP C++ ++ KE+I K ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Sed0007604 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-13
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  MAYSRQHDFLFCNLCGTMLTCCSTKYVECPFCKSKQSAKEVIGKEISYTVTAE 54
          M  SR+ D LFCNLCGTML   STKY ECP C++ ++ KE+I K ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]

BLAST of Sed0007604 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 34/114 (29.82%), Postives = 55/114 (48.25%), Query Frame = 0


Query: 11  FCNLCGTMLT---------CCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGI 70
           FC  CG +L           CST    CP+    Q   E+  K++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCST----CPYVAYIQRQVEIKKKQLL-------VKKSIEA 62

Query: 71  SLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]

BLAST of Sed0007604 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 33/114 (28.95%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 11  FCNLCGTMLT---------CCSTKYVECPFCKSKQSAKEVIGKEISYTVTAEEIRKQLGI 70
           FC  CG +L           CST    CP+  + +   E+  K++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCST----CPYVANIERRVEIKKKQLL-------VKKSIEP 62

Query: 71  SLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:

BLAST of Sed0007604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143007.1	4.5e-55	91.38	DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031...	[more]
KAG6598510.1	1.7e-54	91.38	DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub...	[more]
XP_023546814.1	1.7e-54	91.38	DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K...	[more]
XP_008445334.1	3.8e-54	91.38	PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_0...	[more]
XP_022144336.1	3.8e-54	91.38	DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214...	[more]

BLAST of Sed0007604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1RMP0	5.5e-11	35.09	DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2...	[more]
Q5TM50	5.5e-11	35.09	DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ...	[more]
Q9P1U0	9.3e-11	35.09	DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE...	[more]
Q1XHV8	9.3e-11	35.09	DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H...	[more]
Q6MFY5	7.9e-10	34.82	DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus OX=10116 GN=Pol...	[more]

BLAST of Sed0007604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKC4	2.2e-55	91.38	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P...	[more]
A0A1S3BBZ4	1.9e-54	91.38	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3...	[more]
A0A6J1CTE6	1.9e-54	91.38	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140...	[more]
A0A6J1KC19	4.2e-54	91.38	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ...	[more]
A0A6J1HDS4	5.4e-54	90.52	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302...	[more]

BLAST of Sed0007604 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25940.1	9.8e-32	55.93	TFIIB zinc-binding protein	[more]
AT1G20065.1	1.5e-16	59.68	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G20065.2	7.8e-13	58.49	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G01210.1	1.1e-06	29.82	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT4G07950.1	1.9e-06	28.95	DNA-directed RNA polymerase, subunit M, archaeal	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 76..115 e-value: 3.7E-12 score: 56.4
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 77..112 e-value: 8.5E-16 score: 57.5
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 74..114 score: 12.826397
None	No IPR available	GENE3D	2.20.25.10		coord: 62..116 e-value: 1.8E-16 score: 61.3
None	No IPR available	PANTHER	PTHR11239:SF19	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..114
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 55..116
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PIRSF	PIRSF005586	RNApol_RpoM	coord: 9..116 e-value: 3.7E-25 score: 86.6
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..114
IPR034004	Pol I subunit A12, C-terminal zinc ribbon	CDD	cd10507	Zn-ribbon_RPA12	coord: 76..116 e-value: 1.62218E-19 score: 73.3912

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007604.1	Sed0007604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006363	termination of RNA polymerase I transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding