Sed0007595 (gene) Chayote v1

Overview


Name	Sed0007595
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Location	LG04: 47408504 .. 47411447 (+)
RNA-Seq Expression	Sed0007595
Synteny	Sed0007595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATTTGTATTAATAAATAAAGAAAAGAAAAGGCATTAAATGCGAGTACCCAAGGGGTGGGTTTAGAGAAAACCTGAGTTTCGCCTCCTCCGAAGAAGAACCAGAAATGGCTTCCGTTTGCCGATCACTTCTTACGGCGGCGCGTTCAAGGTCCATGGCCGGCCGTACCAGAGCACTCTCTCTTAAAACCCTAAATCCAATGCCTGCTTCTTCATCTTCTTCTTCTTCCAGAGGCCTCCCTTCCGTTTCCAGGTACTACTTCTACCTCGAATTTCTTTCAGATCTTAGTTACTACTTCACTGTTTTTGGATTTCCTTGATTTGCTTACATTTTTCATTCTTCGTACTTGGTTTTTTCTCCAGGATTGTTTCGTCTTTGGCTACTCTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGCCTGAAGTCTAAAATTGCCGTCCACTCCAGTTGCTGGAGCTGGCTTTCTGAAGGTATTTTTTGTTCTAAGTTCTTCTTCTCATATATTTGTGCATTTTCTCCTCGGTATGGGGGATTTTTGTTTGTATGATTTCGGATCTTGTTCTGCTAATATATCTATTTGCTTACTCTCTATTAAGTTGTTGATGCTCTGTAAATTTGCTATCATGAATTCCTGTAATATTGTAGCTATTTCCCAATTCTGTCTCTTGAAGGAAGTGGAAGAACTTTGGAAATAGCCTTCTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAAAGGAAACTATTTTATAAAGAAGGAGCACCAATACGTAAATTACATAAATAGATTTTTTTTTTTTTTTGAAGGTACATAAATAGATTCAACTATATGAAGGAAGGTGCTTTTCTTTACACAAAAAATACATATTTGTAACAATCATCTCTAGGAAGTTGTCGAAAGACCTCTTAACATCTTTGAAGACTCGGTTATTCCTTTCACCCCAAATTTTCCATAAAACACACGAGAAAAAGAAAGCCATAAATACTTTTTTCTTCCACCAAAAGGACGACCCACGAAAATCATAGGAAGAAATATTTTGATGTCATTTGGGAATGCAATGGGCCGATCAAAAGCCTTCAAAATCGTCACCCAAAAGGTGTTAGCAAATCGGCAGTCGATGAAAAGATGAGGTTGTCATTCTGCATGTGTTTTGCACATAACACACCAACCGGGAGAAATAGACATATAAGGCATTCTTCTCTTTAATCTCTCAACGGTATTAATTCCCACAAAAAAATCTTTATCGTCTTTGACAGAAATCTTTCCACATAATGGAATACAATTTTTTTACATTCGGGTCCTCAATTCCAAGTAAGCTTTCCATTAGAGAATGCATTGTAAAAGTTTTGGATGGATCCATAGACCATAACCATGCATTGGGGCATCTTGTAAGCTAATAGAGTCCAAAATACAAGATAGATTGGCCTATTCCGTCAATTCTAAATCATTTAAATTTCTTCGAAGCCTCAAACTTCAAGCGCCTGAAGGATTGGCCATTGCATTTGCTACCATTAGCTCGGGGCAAGAGGTAAGACGGAGAAGCTGAGGGAACACTCTACTAATAACCCCACAGCTAAGCCACAAATCTGACAAAAAAGAGTTAGAAATACAATTTCCCAAGCATCGACCTACTCTATCAACCATAATATTCAACGTCGAAAAAATAAACCTCCAGGGGCTTTATGCATAGTAGATCTCACTGTCTAGAATATGCAATGTGCAATGTGCATTGGATTTTGATTGCCTTGAACTCTTAACCCTGGTGTGAGATAGATTAGTTTAGTTTCTTGGTGGATAGAATTAAATTCATCCACAATTTGCCAGGAAGTATTACTCCTTTGAAACTGTGTGTATTGTATCATCATTTCTGTACAACTTTTTTTTATAAGAAACTATTTCATTGAATGATGAAATATGGAACCCCGATGGCAGTAACAAAAGACCTCATAGAAAAGGTATAAACACTAAAGATAGATGAGCGTTTAGTCCAAGAAAACATAAATTTTATAATTTTTAAGAAAATATTTGAATTCTTAACAAAATTCCAAAAAAAAAACGAGTTTCAAAACTTTCGTTGATTTTTTAAAACATAGTTAAAAAGCTGATCACTAGGCAAAGACTCAACAAAAGAGTATTTATTATATAGCCTTAATCTTCAATAACCAAATGATTATCAAATGAGTATTTATTTTTTGTTATAAAAGTGAGGTAGGTTATGTTCACTTTACTAATAACTTTTTTATTGAGTTTCTTTTAGTTTTGAAATGTTGGCCCAATTTCGAAAACCAAAATGTAAAGTGTAGTCGAAAAGAGTTCATACAAGCTATGTATAATCAAATAAAAAAAACTAAAAACAAAATTGTTACCAAAGGGCTCCTTATTAGTTATTTATTGGCTAACATTGCATCTTTGTGTATTTACTTATCGTATTATGAATTACACTCTGAGAAATGATAATCCATAACTTTCACCTTGAATGGCCATTCATACATCTCTTGTATCATATTGAGTAGTTCATATTGATATCCTAACTTCATCATTATACCTTATCTTTTAGGATTTGCAACACCTTTGTGACATTAAGACTGGCGTAGGGTGACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACAATTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTACTGATTTTTGTATGATACCTTTATCACAACTTCACAAGGAAGAATCATACAGACAACTGTTTTTTAGTTTTGATGATCATTGTATAATGCAATGCAACCACCTTTTCCTGGATATGCAAAGTTATTGATTACAGTCTCTGACCACAAATCTTGAGAGATTGATTTGTTTTTAGTCATCTCTCTGTTGCTATTGACTTTGTCCAATAATCTACATGTGATTTTCTCTATGCCTTAAATATGGGG

mRNA sequence

AAAAATTTGTATTAATAAATAAAGAAAAGAAAAGGCATTAAATGCGAGTACCCAAGGGGTGGGTTTAGAGAAAACCTGAGTTTCGCCTCCTCCGAAGAAGAACCAGAAATGGCTTCCGTTTGCCGATCACTTCTTACGGCGGCGCGTTCAAGGTCCATGGCCGGCCGTACCAGAGCACTCTCTCTTAAAACCCTAAATCCAATGCCTGCTTCTTCATCTTCTTCTTCTTCCAGAGGCCTCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTCTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGCCTGAAGTCTAAAATTGCCGTCCACTCCAGTTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGACATTAAGACTGGCGTAGGGTGACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACAATTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTACTGATTTTTGTATGATACCTTTATCACAACTTCACAAGGAAGAATCATACAGACAACTGTTTTTTAGTTTTGATGATCATTGTATAATGCAATGCAACCACCTTTTCCTGGATATGCAAAGTTATTGATTACAGTCTCTGACCACAAATCTTGAGAGATTGATTTGTTTTTAGTCATCTCTCTGTTGCTATTGACTTTGTCCAATAATCTACATGTGATTTTCTCTATGCCTTAAATATGGGG

Coding sequence (CDS)

ATGGCTTCCGTTTGCCGATCACTTCTTACGGCGGCGCGTTCAAGGTCCATGGCCGGCCGTACCAGAGCACTCTCTCTTAAAACCCTAAATCCAATGCCTGCTTCTTCATCTTCTTCTTCTTCCAGAGGCCTCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTCTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGCCTGAAGTCTAAAATTGCCGTCCACTCCAGTTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGA

Protein sequence

MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESLMPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL

Homology

[Close]

BLAST of Sed0007595 vs. NCBI nr
Match: XP_022136047.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MA+VCRSLLTAA SRS+AGRTR L+ KTLNPMP   SSSSSRG+PSVSRIVSSLAT+ESL
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPV--SSSSSRGVPSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92

[Close]

BLAST of Sed0007595 vs. NCBI nr
Match: XP_023531748.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASVCRS+LTA  SRSMAGRTR L  KTLNPMP    SSSS+GL SVSRIVSSLAT+ESL
Sbjct: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMP---DSSSSKGLTSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 91

[Close]

BLAST of Sed0007595 vs. NCBI nr
Match: XP_038887804.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 5.5e-27
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASVCRSLLTAA SRSMAGRTR L+ KTLNP+     SSSSRG  SVSRIVSSLAT+ESL
Sbjct: 1  MASVCRSLLTAAASRSMAGRTRTLAHKTLNPLLV---SSSSRGFSSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CW WLSEGF TPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWCWLSEGFVTPL 91

[Close]

BLAST of Sed0007595 vs. NCBI nr
Match: XP_022933658.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 130.2 bits (326), Expect = 9.5e-27
Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASVCRS+LTA  +R + GRTR L  KTLNPMP    SSSSRGL SVSRIVSSLAT+ESL
Sbjct: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP---GSSSSRGLTSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 91

[Close]

BLAST of Sed0007595 vs. NCBI nr
Match: KAG7022286.1 (hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASVCRS+LTA  SR MAGRTR L  KTLNPMP    SSSS+GL SVSRIVSSLAT+ESL
Sbjct: 1  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMP---ESSSSKGLTSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGF 91
          MPLHSAVASARLKSKIAV S CWSWLSEGF
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGF 87

[Close]

BLAST of Sed0007595 vs. ExPASy TrEMBL
Match: A0A6J1C4G8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007834 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MA+VCRSLLTAA SRS+AGRTR L+ KTLNPMP   SSSSSRG+PSVSRIVSSLAT+ESL
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPV--SSSSSRGVPSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92

[Close]

BLAST of Sed0007595 vs. ExPASy TrEMBL
Match: A0A6J1F5F6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441012 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.6e-27
Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASVCRS+LTA  +R + GRTR L  KTLNPMP    SSSSRGL SVSRIVSSLAT+ESL
Sbjct: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP---GSSSSRGLTSVSRIVSSLATVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 91

[Close]

BLAST of Sed0007595 vs. ExPASy TrEMBL
Match: A0A0A0K7P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.3e-25
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLESL 60
          MASV RSLLTAA SRSM GRT++L+ KTLNP+P   SSSSSR  PS +RIVSSLA +ESL
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPV--SSSSSRTFPSFTRIVSSLANVESL 60

Query: 61 MPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          MPLH+AVASARLKSKIAV S CWSWLSEGFAT L
Sbjct: 61 MPLHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Sed0007595 vs. ExPASy TrEMBL
Match: A0A6J1GKU0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454867 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.7e-24
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MASVCRSLLTAAR---SRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATL 60
          MAS+CRSLL AA    SRSMAGRTR L+  TL P+P    SSSSRG  SVSRI SSLA++
Sbjct: 1  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPV---SSSSRGFISVSRIASSLASV 60

Query: 61 ESLMPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          +SLMPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 DSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 94

[Close]

BLAST of Sed0007595 vs. ExPASy TrEMBL
Match: A0A6J1I675 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471072 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MASVCRSLLTAAR--SRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLE 60
          MASVCRSLL AA   SRSMAGRTR L+  TL P+P    SSSSRG  SVSRI  SLA+++
Sbjct: 1  MASVCRSLLAAAAGGSRSMAGRTRTLAHVTLKPVPV---SSSSRGFISVSRIAPSLASVD 60

Query: 61 SLMPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          SLMPLHSAVASARLKSKIAV S CWSWLSEGFATPL
Sbjct: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 93

[Close]

BLAST of Sed0007595 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-17
Identity = 52/97 (53.61%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSS---SSSRGLPSVSRIVSSLATL 60
          MAS CRS L A  SR++  R+R ++ K+LN  P ++SS   S S+ +P  SR++S+L ++
Sbjct: 1  MASFCRSALMAG-SRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVHSSCWSWLSEGFATPL 95
          E+++PLHSAVASARL+S IA  SSCWS LS+G ATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

[Close]

BLAST of Sed0007595 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MASVCRSLLTAARSRSMAGRTRALSLKTLNPMPASSSS---SSSRGLPSVSRIVSSLATL 60
          MAS CRS L A  SR++  R+R ++ K+LN  P ++SS   S S+ +P  SR++S+L ++
Sbjct: 1  MASFCRSALMAG-SRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVHSSCWSWLSEGFATP 94
          E+++PLHSAVASARL+S IA  SSCWS LS+    P
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQELGVP 95

[Close]

BLAST of Sed0007595 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.4e-05
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 30 NPMPASSSSSSSRGLPSVSRIVSSLATLESLMPLHSAVASARLKSKIAVHSSCWSWLSEG 89
          +P+ +SS SS++  +    R+   L+   S++PLHSA+ASARL S ++V S  W  + +G
Sbjct: 33 SPIKSSSPSSATSRINQSFRLPVELSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

Query: 90 FATPL 95
           + PL
Sbjct: 93 ISMPL 97

[Close]

BLAST of Sed0007595 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 31 PMPASSSSSSSRGLPSVSRIVSSLATLESLMPLHSAVASARLKSKIAVHSSCWSWLSEGF 90
          P P  S+S SS     ++R       L S++PLHSA+AS+RL S ++V S  W  + +G 
Sbjct: 32 PSPIKSASPSSATSCRLNRSSRLPVELSSMIPLHSAIASSRLVSSLSVESKIWGLVPQGL 91

Query: 91 ATPL 95
          + PL
Sbjct: 92 SLPL 95

[Close]

BLAST of Sed0007595 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 10  TAARSRSMAGRTRALSLKTLNPMPASSSSSSSRGLPSVSRIVSSLATLE-----SLMPLH 69
           +AA S S  G++  ++         + SSSS+R  PS+ R+  S   +E     SL+PLH
Sbjct: 25  SAATSASKIGKSAGIAF-------GNGSSSSTR--PSLRRLTFSRVPVELSAGISLIPLH 84

Query: 70  SAVASARLKSKIAVHSSCWSWLSEGFATPL 95
           S  ASA L S +++ +  WS LSEGFA+ L
Sbjct: 85  SVTASALLTSLLSLSNQNWSCLSEGFASTL 105

The following BLAST results are available for this feature:

BLAST of Sed0007595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136047.1	4.1e-30	86.17	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara...	[more]
XP_023531748.1	2.3e-28	84.04	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo ...	[more]
XP_038887804.1	5.5e-27	81.91	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]	[more]
XP_022933658.1	9.5e-27	80.85	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita ...	[more]
KAG7022286.1	1.8e-25	82.22	hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0007595 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4G8	2.0e-30	86.17	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha...	[more]
A0A6J1F5F6	4.6e-27	80.85	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbit...	[more]
A0A0A0K7P3	3.3e-25	77.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1	[more]
A0A6J1GKU0	4.7e-24	75.26	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbit...	[more]
A0A6J1I675	1.1e-23	76.04	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita max...	[more]

BLAST of Sed0007595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39300.1	1.1e-17	53.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.2	3.0e-15	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.1	6.4e-05	38.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13674.1	3.2e-04	39.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70350.1	7.0e-04	38.89	unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR33156:SF37	BNAA06G40680D PROTEIN	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007595.1	Sed0007595.1	mRNA