Sed0007568 (gene) Chayote v1

Overview


Name	Sed0007568
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Small polypeptide DEVIL 3
Location	LG01: 12423257 .. 12423454 (-)
RNA-Seq Expression	Sed0007568
Synteny	Sed0007568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACTGGAACTGGAAGGCCTACAAAGAAGGAAATTCAAGAAGAAATGGAGATTAAAAGTGGTTGTAGAACTGACAAGTCTAAGGCAAAATCCTCAACTAAAATTGGAGGTTTTGTTCAAGAAAGCAAAGGTAGGTTTTATATTATTGGCAGATGTGTTGCTATGCTTCTTTGCTGGCATGACTCAGAAAATTAA

mRNA sequence

ATGATCACTGGAACTGGAAGGCCTACAAAGAAGGAAATTCAAGAAGAAATGGAGATTAAAAGTGGTTGTAGAACTGACAAGTCTAAGGCAAAATCCTCAACTAAAATTGGAGGTTTTGTTCAAGAAAGCAAAGGTAGGTTTTATATTATTGGCAGATGTGTTGCTATGCTTCTTTGCTGGCATGACTCAGAAAATTAA

Coding sequence (CDS)

ATGATCACTGGAACTGGAAGGCCTACAAAGAAGGAAATTCAAGAAGAAATGGAGATTAAAAGTGGTTGTAGAACTGACAAGTCTAAGGCAAAATCCTCAACTAAAATTGGAGGTTTTGTTCAAGAAAGCAAAGGTAGGTTTTATATTATTGGCAGATGTGTTGCTATGCTTCTTTGCTGGCATGACTCAGAAAATTAA

Protein sequence

MITGTGRPTKKEIQEEMEIKSGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHDSEN

Homology

[Close]

BLAST of Sed0007568 vs. NCBI nr
Match: XP_016899613.1 (PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 7   RPTKKEIQEEMEIKSGCRTDKSKAKSSTK-IGGFVQESKGRFYIIGRCVAMLLCWHD 63
           RPTKK I+E+M+I+SG   + SK KSS K   GFVQE KGR YI GRCVAMLLCWHD
Sbjct: 130 RPTKKGIEEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 186

[Close]

BLAST of Sed0007568 vs. NCBI nr
Match: KAG7019956.1 (hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 9  TKKEIQEEMEIKSGCRTDKSKAKSSTK-IGGFVQESKGRFYIIGRCVAMLLCWHD 63
          TK+E +E+M++K+G R + SK KSS K   GFVQE KGR YI GRCVAMLLCWHD
Sbjct: 45 TKRETEEDMKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 99

[Close]

BLAST of Sed0007568 vs. NCBI nr
Match: XP_010660503.1 (PREDICTED: uncharacterized protein LOC100263434 [Vitis vinifera] >XP_034708079.1 uncharacterized protein LOC117931252 [Vitis riparia])

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-06
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 17 MEIKSGCRTDKSKAK-SSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          M++ S   +D SK + SS K+GGF++E KGR YII RCV MLLCWHD
Sbjct: 3  MKMMSSTTSDGSKRRLSSGKLGGFLREQKGRLYIISRCVVMLLCWHD 49

[Close]

BLAST of Sed0007568 vs. NCBI nr
Match: XP_006482297.2 (uncharacterized protein LOC102623751 [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 17 MEIKSGCRTDKSKAK--SSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          MEI +     KS  K  S TK+GG+++E KGR YII RCV MLLCWHD
Sbjct: 1  MEIGNAAAAMKSSKKKISCTKLGGYLKEQKGRLYIIRRCVVMLLCWHD 48

[Close]

BLAST of Sed0007568 vs. NCBI nr
Match: XP_024037853.1 (uncharacterized protein LOC112097238 [Citrus clementina])

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 17 MEIKSGCRTDKSKAK--SSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          MEI +     KS  K  S TK+GG+++E KGR YII RCV MLLCWHD
Sbjct: 1  MEIGNAAAAMKSSKKKVSCTKLGGYLKEQKGRLYIIRRCVVMLLCWHD 48

[Close]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot
Match: Q6X5U0 (Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-07
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 27 KSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          K K   + K+GG+++E KGR YII RCV ML+CWHD
Sbjct: 5  KKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-05
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 33 STKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          S  +GG V+E K + YII RCV MLLCWHD
Sbjct: 17 SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot
Match: Q6IM92 (Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-05
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 27  KSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHDSEN 66
           K K   + K     +E KGRFYI+ RCVAML+CWH  ++
Sbjct: 69  KEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKHDS 107

[Close]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot
Match: Q6IM94 (Small polypeptide DEVIL 7 OS=Arabidopsis thaliana OX=3702 GN=DVL7 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.5e-05
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 9  TKKEIQEEMEIKSGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWH 62
          TK+E  +  E K      K+K  S   +G F+++ KGRFYIIG+C+ MLLC H
Sbjct: 6  TKEEAVKNWEKK------KNKPSSPKGVGEFLKKKKGRFYIIGKCITMLLCSH 52

[Close]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot
Match: Q6X5U1 (Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 27 KSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          K K   S ++G +++E KGR YII RCV MLLC HD
Sbjct: 10 KEKKSQSRRLGKYLKEQKGRIYIIRRCVMMLLCSHD 45

[Close]

BLAST of Sed0007568 vs. ExPASy TrEMBL
Match: A0A0A0LTM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 7  RPTKKEIQEEMEIKSGCRTDKSKAKSSTK-IGGFVQESKGRFYIIGRCVAMLLCWHD 63
          RPTKK I+E+M+I+SG   + SK KSS K   GFVQE KGR YI GRCVAMLLCWHD
Sbjct: 3  RPTKKGIEEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 59

[Close]

BLAST of Sed0007568 vs. ExPASy TrEMBL
Match: A0A1S4DUH1 (uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 7   RPTKKEIQEEMEIKSGCRTDKSKAKSSTK-IGGFVQESKGRFYIIGRCVAMLLCWHD 63
           RPTKK I+E+M+I+SG   + SK KSS K   GFVQE KGR YI GRCVAMLLCWHD
Sbjct: 130 RPTKKGIEEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 186

[Close]

BLAST of Sed0007568 vs. ExPASy TrEMBL
Match: A0A2P2Q389 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 17 MEIKSGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          M++ +    D  K  S  ++GG+++E +GR YII RCV MLLCWHD
Sbjct: 1  MKMSNAAMADSKKKMSCRRLGGYLREQRGRLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007568 vs. ExPASy TrEMBL
Match: A0A396GVW7 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0220921 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 21 SGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          S  R  K K  SS K+GG+++E KGR YII RCV MLLCWHD
Sbjct: 7  SNMRGSKKKV-SSKKLGGYLKEQKGRLYIIRRCVVMLLCWHD 47

[Close]

BLAST of Sed0007568 vs. ExPASy TrEMBL
Match: A0A061EGY3 (ROTUNDIFOLIA like 21 OS=Theobroma cacao OX=3641 GN=TCM_019511 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.9e-05
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 16 EMEIKSGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          +M I +       K  S  ++GG+++E KGR YII RCV MLLCWHD
Sbjct: 2  KMSISAAAMRASKKKISCRRLGGYIREQKGRLYIIRRCVVMLLCWHD 48

[Close]

BLAST of Sed0007568 vs. TAIR 10
Match: AT1G67265.1 (ROTUNDIFOLIA like 21 )

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-08
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 27 KSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          K K   + K+GG+++E KGR YII RCV ML+CWHD
Sbjct: 5  KKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of Sed0007568 vs. TAIR 10
Match: AT1G07490.1 (ROTUNDIFOLIA like 3 )

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 27  KSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWHDSEN 66
           K K   + K     +E KGRFYI+ RCVAML+CWH  ++
Sbjct: 69  KEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKHDS 107

[Close]

BLAST of Sed0007568 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 33 STKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          S  +GG V+E K + YII RCV MLLCWHD
Sbjct: 17 SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007568 vs. TAIR 10
Match: AT1G68825.2 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 33 STKIGGFVQESKGRFYIIGRCVAMLLCWHD 63
          S  +GG V+E K + YII RCV MLLCWHD
Sbjct: 17 SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007568 vs. TAIR 10
Match: AT3G18518.1 (ROTUNDIFOLIA like 20 )

HSP 1 Score: 47.0 bits (110), Expect = 6.8e-06
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 9  TKKEIQEEMEIKSGCRTDKSKAKSSTKIGGFVQESKGRFYIIGRCVAMLLCWH 62
          TK+E  +  E K      K+K  S   +G F+++ KGRFYIIG+C+ MLLC H
Sbjct: 6  TKEEAVKNWEKK------KNKPSSPKGVGEFLKKKKGRFYIIGKCITMLLCSH 52

The following BLAST results are available for this feature:

BLAST of Sed0007568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899613.1	1.0e-11	68.42	PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo]	[more]
KAG7019956.1	1.5e-10	65.45	hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_010660503.1	6.4e-06	59.57	PREDICTED: uncharacterized protein LOC100263434 [Vitis vinifera] >XP_034708079.1...	[more]
XP_006482297.2	2.4e-05	58.33	uncharacterized protein LOC102623751 [Citrus sinensis]	[more]
XP_024037853.1	2.4e-05	58.33	uncharacterized protein LOC112097238 [Citrus clementina]	[more]

BLAST of Sed0007568 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X5U0	6.0e-07	58.33	Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1	[more]
Q6X5T8	4.3e-05	63.33	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]
Q6IM92	4.3e-05	48.72	Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1	[more]
Q6IM94	9.5e-05	45.28	Small polypeptide DEVIL 7 OS=Arabidopsis thaliana OX=3702 GN=DVL7 PE=3 SV=1	[more]
Q6X5U1	1.2e-04	55.56	Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1	[more]

BLAST of Sed0007568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM0	4.9e-12	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1	[more]
A0A1S4DUH1	4.9e-12	68.42	uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=...	[more]
A0A2P2Q389	4.4e-05	47.83	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A396GVW7	5.8e-05	61.90	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0220921 ...	[more]
A0A061EGY3	9.9e-05	48.94	ROTUNDIFOLIA like 21 OS=Theobroma cacao OX=3641 GN=TCM_019511 PE=4 SV=1	[more]

BLAST of Sed0007568 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67265.1	4.2e-08	58.33	ROTUNDIFOLIA like 21	[more]
AT1G07490.1	3.0e-06	48.72	ROTUNDIFOLIA like 3	[more]
AT1G68825.1	3.0e-06	63.33	ROTUNDIFOLIA like 15	[more]
AT1G68825.2	3.0e-06	63.33	ROTUNDIFOLIA like 15	[more]
AT3G18518.1	6.8e-06	45.28	ROTUNDIFOLIA like 20	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 44..59 e-value: 4.6E-10 score: 39.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..30
None	No IPR available	PANTHER	PTHR47855:SF5	SUBFAMILY NOT NAMED	coord: 6..62
None	No IPR available	PANTHER	PTHR47855	OS01G0525701 PROTEIN	coord: 6..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007568.1	Sed0007568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation