Sed0007535 (gene) Chayote v1

Overview


Name	Sed0007535
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase sigma factor
Location	LG03: 14193127 .. 14199740 (+)
RNA-Seq Expression	Sed0007535
Synteny	Sed0007535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGGACTCAACTTGCTGTCTTCATCTTCGCCTTTCGTTTCGAGATGCCATTCCAGAAGCTTCGTCCATCCTTCTTGTTCTTCCTCTTCTTCTTCTTCTTCAGGTAGTATTTGCATTTTTTTTTATCTAGCTCATTTCTGTGCCTTTGTTTTGGATTTTCCTGTTGATTTTAGCTCGAATGTGAAACTTATCGAGTTCTGTTTAGAATGTTTCTTGTTGGGTTTGCCTTATTTTGATTTTACTGTGCTTCTACTGGCGTTTCCTTGTTCAAATTGTGTAATGATTTTGCGAATGTTAACCATTATGGAGTGTCTACTGGCCAAGAGGGCCTTAAGGAGCTGCTAAGAGCTAAGAGGTAATGGCTTCGATCCATAGCGAACACCTAGGAATTCATTTCTTAAGTTTCCTTGACACCAACGTCGTAGGGTTAGGCAATATGTGTCGTGACATTAGTTGAGGTGCACGCAAACTGGCATGAACAATCACGAATATAGAAAAATGATTAAATTGAGATATGCATTGAACACATTGCCCTGTGATTAGTTAGTCTGAGTGCGGGGGTAACACTCCCATTGCATAAACGCTTTTTGCATTACAAGAAATTGCATCCCAAATTGCATCAATGCATTCTGCATGCATTTAGCGCATCCCGCATTCGCACTTCGCAAAGTAAGCGCATCCACATTCTGTTGACGCTCCGCATGTGCTAGTGCATCCGCATTCTGTTGCACAATTCTTATTTATGCATTATGTAATAGGGTTTAATGAGAGTGCATATATAAACTCGAATTAAACCCTAGCCGATTAGGATGTTCATTCTGTAATCTGTAATTCGTTTCTCCCTAACAAAATTTCGCCCCCTTTCTGCCAGTGGGTTTCTTAGCTAATACAACGTTAGTGAACCACGTAAATTTCTGTGTTGTTTCATCTTTTTTTATGTATTCTTTATCTTTGCATCGGTTGTTGATTGCCGTTTTCATAAGTGATTATGTGAATGCTTTTTCTGAGTCCAATGGTGCCCATTGGTAATTTGATCACATGCTCCATTTCCATTGTGGAGTGTGAGAATAAGTTGAACCTATATTAGATAGTATGAAGAAGTTCCACTTCAAAATCAATTGGTGAAGAGGGGAGTAGCCCACACATCTTATAAAAATGTGTTGTAAACTCCTTACCTTTCCAATGTAAGATGAGGTGAGGATCTCTAACGTGCCTCTCAAGATGATTCTACATTGGGAACACCATCTGATTCTTGAATTAGATCTAAAATTTGTAGACCAAAACACCCGATTAAGTTTTAACCGCTTACTTTGAGGGTATGCTCCCCTCAAAGTCCCGAGTTCGAGTCTTCCTTGTGACAAGACTCCTTCGATGTCTCCAGTGCTTGGCCTAAGAATGGGCATGGTTACCTTGTTTCAAAAAAAAAAAAAGTTTTGACCGCTTGGTTGGATCCGAATTTGTGGACAAATACCCACTTGGAGTTCTAATACCATATTAGATAATGTGGGGTTCCATCTCAAAACCAATTGGTAATAAGAGGAGTAGCCCACATATCTTATAAATTTGTTGTAAACTCTTCACCTTTCCCATGTAGGATTTTAGAATCATTTATCAGAAATGAGCATTGTACTTGGGTTATTTATTTCTTTTAGTTTTAGGGTGAGTTACTTTTAGGAGAAGCAGTTTTAAGGATTTGAAGTCCTTTTTAACTCTTTTGAACTTTTGAGTATGCAATTAAACACCATGAAAATTGTGAAAATGGTCTTTTAATTGGCTTAAAGCTACAAAAGAAATATCAGATTCATTATTCACTGTAATTTTGTGCATAGAATTCTCTATTTTTGTATATTATTCAACATTGATAAGGCTTTCTTAAATAGGGAAAAATACCTTAAGCTAGATAAGGTAAAAAAGTATGAAGGGAAAGTGCACAACGGTAAAATGTACATTGGAAAGAATAATAAATTACATTTAGGAAAGAATAATTCACAATAATCAACATTAATTTATGCCAATCTCTTGTATTATTTAGTTTTTCTTTCTACACAGAAAGATATATATGTAGAAATGATACATCTACTCTGGTACGCGTTTGTTATGAAATCCTGCAGTTTCTATGTTCAATGAACAAGCGACTCCTGCTCGTTACTTTTCAACTTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGAGCTCAATCACAAATACTTAAGGATGATAAAACATCCCAGGTTAGAATTCTCTTACCTTCTACATTTAAATTGGATTATTGTATTGTATATTGAACTATATTAATGTGTGTTTTCTTTAAAAGAATGGTCAGTATTTTATTTTCTCTGTGCATGTACATATTTTTCGTGAATGGCTGTATGTTCTCTTCGGCGATGTACCCTCGTTTTATTGTTCTCACAATGTTGTTAGATCTGTCTGTTTAATTGTGTATCCTCTTAATTCCACTGAGGATACTCTTGACTTGTTCTTATGCTCTCTCTGATGTACCCTAGACCAATGAATAACAATTCTACAAGAACTCAATCTTTATTAATCAATCAAAAGATATCATACATGAGGGGGAGGAGATTTGTATTTGTAGGAAAATATGTGCTTAACTAACTAGCATGAAAAATACCTAATTTACCCTTATCCTATTACATCACTCTCTCTCTCTCACACACCCACACAGTTCATACATATTCAAGTATTTATATGTATCTGAGTGTGCACATGTGCATTTGGGATTCTAATTGATTATTCATTTGATGCCCCATTGTGAAGATGACTATAGATAGGAGGCTGATTGAGAGGAGTGTTTCAATTGATGAAGGGAGTGGAAGCGACCTGGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGTCGAGTGGCCTGGTTTATTATCATCGTAAGATGAACTAAACTTCCTTCTTCTGACCATTCTTATCAATATACAGATGGAAATCTGCATCAATTTATCATTTCTGTCATGTTGAGTAAATGGAATAATTTTGCAGATGGCCATCCTTACAAATGGGGGAATATAAGGTCTCATCAATGGAAAAGCATTTCAATAACACCAGTAGGGAGTTGCTTGTTGAAGAAGAACCAGAGAATGCCATTGCTCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATCATTAGTGGAGGAGTCTGACTTGGTTGGAACCAATATTGATTACTCTTCTGAGGAGTAAGTTATAATTTTCTAATGTTATGTGCTCAATTTTTGATAGCCACACTTGTTACAATAGTTTCATTGCAACTATAGTCTTGCTCATATTGGGATATATTCATTGATCAGTTCTCTAAGCAAGGAGAGGAGAACTGTCAAGTCAACCAGGCTGCAAGATAGACGGCCAAAGAAGAGAAGGGTGCCGAAACACGTAACAACAATGCATGAGACTTATAATTCTAGAGGCAAAGAAACACGGAGAAAAACAACTGAAAATTCTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGCCCTGAAACAAAGAAGCTGTTAACAGTTCAAGAAGAGTCCGAGTTGATTGTACAAATCCAAGTATGCATGTGAAGGCTATATGTTTGTGTTTTTCAGTTTACATTTCTTCTATTCATTAGAATTGTTGATAAAGTAACCTTTCACAGGATTTAATGATATTGGACAACGTGAAAGCTCGACTTCAGTCTCAGTTCAGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCCCTAGGGCTTACTTGTCAACGTTTACAGTCACAGCTTCATTCCTTTAGGATCAGTCGTGAAAAGCTTATCAATGCAAATTTGCGAATGGTGGTTCACATCGCTAAACAATATCAGGGCCGTGGTCTCAGCCTTCACGACTTGTTGCAGGTTATGCTCTAATTATGAGGCATGCATCCGTGCTGCAAAGCCCTTAACTCTCTTCCTTTTAAGTTGGTAGATGAGTTCAATGGTCAAAATTTCTAGGCCACTAATGAGCAGAATGACATGTATTTCTCAAACCTTCTGCTTCAGGCACTGTGCTTAAGTTAAGACATTTTTTGTTTCCCTGTTTGGAAAAGTATCTTCTTTCTCATCTATCCATTTGTCTGTCTGTTTATCTACCTTATTTATTTGCCGTGTCATAATTGTTTATCTTTGGTGAACAGATGGTAACTTGTTTACCCAAACTATATCTTGAATCAATTATAAGATCTGAAAATTCAGGCAATAAACAAGTTACCATGTGGGATCTATCCAAACTTGGCATTTTGCTCTAATTTACTGCTAGTTCTGTTGTATAAACACGTATGCCTATCTGTTACATTACATTACTCTCCACATTCTTTCTGGTAAAACTATTACTAATGAAGTCCTGATCTACATAGGAATAATTGTACAAATCATTTTAATTAAGATTTATTTGATATTGAGTTATTTGAGTTAAGGAATTGGTTCAGGATTCCTGATTTGTAAACGTTTGCATTCTCCATTTGGAATAAGATCCTCTATTTAATGTGTTTAGATATGTGAATAGGCTATACTGATTTTCTAGCTTCATTTCTGATATTGTCTTAGCAAGGAAGCTTGGGACTTATGAAGAGCGTCGAAAAATTCAAACCACAAGCCCGTTGCCGCTTTGCTACTTATGCTTATTGGTGGATTAGGCAATCAATTAGGAAAGCCATATTCGAACACTCACGAACTATTCGTTTGCCTGTAATCTTACGGTTCATTCTTGAAGAAATTTGACGATTAAATTCCATTGTTCAGTTAACCCCTTTTTTAAAACGTAACTGTTTTTCCTTTTTCCAAAGGAAACAAGTATAACAAAATTGCATCGACATTTGCAGGAAAATGTGTATGGCCTCCTCGGAAAGGTAACTGAGGCAAAGAATTATTTTGTTCGAGCTGGGAATTATAAGCCGTCTAAAGAAGAATTAGCTGAACATGTCGGAATTACCGTTGAGAGATTGGATAAGTTAATGTTTATGTCAAGAATTCCACGTTCGTTGCAGCAACCTGTATGGTCTGACCAAAAAACCACTTTTCAGGTATCTTTCCCTTCTTCTATTGACTTTAACCAATGAAATAGGACAGAGAAGATTGATCAAAGACAGGATATGGCATTAAACATACAGCTTTGTGAATCTAATATTTTAGATTTTACCTTCCATAAAGCTTGCAATGCAACTCTTCACTACTTTATTGGAAATGTGGCTCAGAGAAAAGAAACATTTAGGGTGTGTTTGGCCCCCGTTTATGTAAACGGCCGGGTTGGTTATAATAACTCAACTGATGTTTGCCCCGCCGTTTAACAGTGGTTACCTAAATCTGTGTGTCCGTTTATCTAAACCTTTGTGTCCATTTATCTAAACCTTACTTATATTACTTTTTGTTACATAGCTAGCCTCTCAAACATCGTTTATCATAATTTCTGTTATAATAAATTGTCCTTCAAACACCATTTATCATAACCCACCATTTATCACAACCTTCTGTCTATCATAACCAAACCAGTTCTCCAAACACACCCTTATTGAACCGGCAGATTTGCTAAATGCTGGGTTACCAATGAAATTCACTTTATACCAGTGATTATCATCTTACAGGGAAGATGTTTTAAATGTGAGAGATTAATGATGTCACGAATAAGTGATCAAAGAGATGTTTTGCCATTATCGAAAAAACCATTCCTAATCCCAAATTCGAACGAAAACAGTAATGATAAACTATATTGTAATTTATTCCTTACGGTTAACGATAAACTATATGTAACTTAAAGAAGAAATTATAATATCATTACCATTCGAGAGGGTTAGAACTTTCTCAATCGAACGAAAACGATAACAATAGACTATATTATAACCATAAGGAAGAAATTATAATATCATTGCCATTAGAGATGGTTAGAAAACAATAACAATAGACTATATTGTAACCTTAAGGAAGAAATTACAATATTATAGCCGTTGGAGAGAGCTAGTACTCTACCGATCAATCCACCAAAGAATGATTTACCCAAAATATAACTTATTTTCTACAAACCTTACCTCTACAATTTATAACAGATTTCTCCAATTAATACCCAAAAATATCCCTTACATAACCTTTTAAACCCCATACATCCATATTAGGACTCAGTTCCATCTTTTTCTGTTGTCCAAGCTTTGGTTAAGTCTGTCAGAAGATAAATTGCTTTGCTTGTGTCGCTTGAAAACATTATAGAACTGGTTTCTATAATCAAGCACAGAAAAAGTGCATAGAAACATTCACTCTAGCATCATGCTAATAGCTCTTGCATTCTGAATTATATTACAGGAAGTAACTGCAGACTCTGAAGTCGACACCCCGAACGACAGCGTAGAAAAAGAGCTGATGCGAAGGCACATTCGGAATCTCCTCAGCATTCTCAGTCCAAAAGAGAGACGAATTATCAGACTGAGATTTGGTATTGAAGATGGTGAACAAAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAGGGAGAGGGTGCGACAGCTCGAAAACCGAGCCTTGTACAAGCTCAAGCGATGCTGCAATAGCCAGGGACTCGGTGCATATGCCGATTTACTGACTTGA

mRNA sequence

ATGGAGGCTGGACTCAACTTGCTGTCTTCATCTTCGCCTTTCGTTTCGAGATGCCATTCCAGAAGCTTCGTCCATCCTTCTTGTTCTTCCTCTTCTTCTTCTTCTTCAGGTATTTCTATGTTCAATGAACAAGCGACTCCTGCTCGTTACTTTTCAACTTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGAGCTCAATCACAAATACTTAAGGATGATAAAACATCCCAGATGACTATAGATAGGAGGCTGATTGAGAGGAGTGTTTCAATTGATGAAGGGAGTGGAAGCGACCTGGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGTCGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGGGGAATATAAGGTCTCATCAATGGAAAAGCATTTCAATAACACCAGTAGGGAGTTGCTTGTTGAAGAAGAACCAGAGAATGCCATTGCTCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATCATTAGTGGAGGAGTCTGACTTGGTTGGAACCAATATTGATTACTCTTCTGAGGATTCTCTAAGCAAGGAGAGGAGAACTGTCAAGTCAACCAGGCTGCAAGATAGACGGCCAAAGAAGAGAAGGGTGCCGAAACACGTAACAACAATGCATGAGACTTATAATTCTAGAGGCAAAGAAACACGGAGAAAAACAACTGAAAATTCTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGCCCTGAAACAAAGAAGCTGTTAACAGTTCAAGAAGAGTCCGAGTTGATTGTACAAATCCAAGATTTAATGATATTGGACAACGTGAAAGCTCGACTTCAGTCTCAGTTCAGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCCCTAGGGCTTACTTGTCAACGTTTACAGTCACAGCTTCATTCCTTTAGGATCAGTCGTGAAAAGCTTATCAATGCAAATTTGCGAATGGTGGTTCACATCGCTAAACAATATCAGGGCCGTGGTCTCAGCCTTCACGACTTGTTGCAGCAAGGAAGCTTGGGACTTATGAAGAGCGTCGAAAAATTCAAACCACAAGCCCGTTGCCGCTTTGCTACTTATGCTTATTGGTGGATTAGGCAATCAATTAGGAAAGCCATATTCGAACACTCACGAACTATTCGTTTGCCTGAAAATGTGTATGGCCTCCTCGGAAAGGTAACTGAGGCAAAGAATTATTTTGTTCGAGCTGGGAATTATAAGCCGTCTAAAGAAGAATTAGCTGAACATGTCGGAATTACCGTTGAGAGATTGGATAAGTTAATGTTTATGTCAAGAATTCCACGTTCGTTGCAGCAACCTGTATGGTCTGACCAAAAAACCACTTTTCAGGAAGTAACTGCAGACTCTGAAGTCGACACCCCGAACGACAGCGTAGAAAAAGAGCTGATGCGAAGGCACATTCGGAATCTCCTCAGCATTCTCAGTCCAAAAGAGAGACGAATTATCAGACTGAGATTTGGTATTGAAGATGGTGAACAAAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAGGGAGAGGGTGCGACAGCTCGAAAACCGAGCCTTGTACAAGCTCAAGCGATGCTGCAATAGCCAGGGACTCGGTGCATATGCCGATTTACTGACTTGA

Coding sequence (CDS)

ATGGAGGCTGGACTCAACTTGCTGTCTTCATCTTCGCCTTTCGTTTCGAGATGCCATTCCAGAAGCTTCGTCCATCCTTCTTGTTCTTCCTCTTCTTCTTCTTCTTCAGGTATTTCTATGTTCAATGAACAAGCGACTCCTGCTCGTTACTTTTCAACTTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGAGCTCAATCACAAATACTTAAGGATGATAAAACATCCCAGATGACTATAGATAGGAGGCTGATTGAGAGGAGTGTTTCAATTGATGAAGGGAGTGGAAGCGACCTGGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGTCGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGGGGAATATAAGGTCTCATCAATGGAAAAGCATTTCAATAACACCAGTAGGGAGTTGCTTGTTGAAGAAGAACCAGAGAATGCCATTGCTCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATCATTAGTGGAGGAGTCTGACTTGGTTGGAACCAATATTGATTACTCTTCTGAGGATTCTCTAAGCAAGGAGAGGAGAACTGTCAAGTCAACCAGGCTGCAAGATAGACGGCCAAAGAAGAGAAGGGTGCCGAAACACGTAACAACAATGCATGAGACTTATAATTCTAGAGGCAAAGAAACACGGAGAAAAACAACTGAAAATTCTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGCCCTGAAACAAAGAAGCTGTTAACAGTTCAAGAAGAGTCCGAGTTGATTGTACAAATCCAAGATTTAATGATATTGGACAACGTGAAAGCTCGACTTCAGTCTCAGTTCAGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCCCTAGGGCTTACTTGTCAACGTTTACAGTCACAGCTTCATTCCTTTAGGATCAGTCGTGAAAAGCTTATCAATGCAAATTTGCGAATGGTGGTTCACATCGCTAAACAATATCAGGGCCGTGGTCTCAGCCTTCACGACTTGTTGCAGCAAGGAAGCTTGGGACTTATGAAGAGCGTCGAAAAATTCAAACCACAAGCCCGTTGCCGCTTTGCTACTTATGCTTATTGGTGGATTAGGCAATCAATTAGGAAAGCCATATTCGAACACTCACGAACTATTCGTTTGCCTGAAAATGTGTATGGCCTCCTCGGAAAGGTAACTGAGGCAAAGAATTATTTTGTTCGAGCTGGGAATTATAAGCCGTCTAAAGAAGAATTAGCTGAACATGTCGGAATTACCGTTGAGAGATTGGATAAGTTAATGTTTATGTCAAGAATTCCACGTTCGTTGCAGCAACCTGTATGGTCTGACCAAAAAACCACTTTTCAGGAAGTAACTGCAGACTCTGAAGTCGACACCCCGAACGACAGCGTAGAAAAAGAGCTGATGCGAAGGCACATTCGGAATCTCCTCAGCATTCTCAGTCCAAAAGAGAGACGAATTATCAGACTGAGATTTGGTATTGAAGATGGTGAACAAAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAGGGAGAGGGTGCGACAGCTCGAAAACCGAGCCTTGTACAAGCTCAAGCGATGCTGCAATAGCCAGGGACTCGGTGCATATGCCGATTTACTGACTTGA

Protein sequence

MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT

Homology

[Close]

BLAST of Sed0007535 vs. NCBI nr
Match: XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])

HSP 1 Score: 943.3 bits (2437), Expect = 9.2e-271
Identity = 490/557 (87.97%), Postives = 525/557 (94.25%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATPARYFSTSFLSQEQ 60
           MEAGLNLLSSSS F+SRCH RSF+HPSCSSSSSSSS +SMF+EQA PARYFSTSFLSQEQ
Sbjct: 1   MEAGLNLLSSSSLFISRCHPRSFLHPSCSSSSSSSS-VSMFHEQAIPARYFSTSFLSQEQ 60

Query: 61  HHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSS 120
           HHECR QSQILKDD+TSQ T+DRRLIERSVSIDEG+ SD DHL+WE KHQAVEWPGLLSS
Sbjct: 61  HHECRPQSQILKDDRTSQTTLDRRLIERSVSIDEGNRSDHDHLIWEFKHQAVEWPGLLSS 120

Query: 121 WPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGT 180
           WPSLQM EYK+SS+EK   N   E+LV++EPEN IALAKKALSASKQAASLV+ES+LVGT
Sbjct: 121 WPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAASLVDESELVGT 180

Query: 181 NIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSD 240
           N+DY+S +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+HET NS+GK++RRKT EN D
Sbjct: 181 NLDYTSPDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIHETSNSKGKDSRRKTIENFD 240

Query: 241 PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEAL 300
           PNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMILDNVKARLQSQF REPTLVEWAEAL
Sbjct: 241 PNDPLRLFLWGPETKKLLTVEEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL 300

Query: 301 GLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEK 360
           GLTCQRLQSQL SFRISREKLINANLRMVVHIAKQYQGRGLSL DLLQ+GSLGLMKSVEK
Sbjct: 301 GLTCQRLQSQLQSFRISREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSLGLMKSVEK 360

Query: 361 FKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKP 420
           FKPQA CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKP
Sbjct: 361 FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKP 420

Query: 421 SKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKE 480
           SKEELA  VGITVERLDKL+FMSRIPRSLQQPVW+DQ TTFQE+TADSE+DTP+ SVE+E
Sbjct: 421 SKEELAARVGITVERLDKLLFMSRIPRSLQQPVWTDQDTTFQEITADSELDTPDVSVERE 480

Query: 481 LMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKL 540
           LMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRALYKL
Sbjct: 481 LMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKL 540

Query: 541 KRCCNSQGLGAYADLLT 557
           KRC NSQGLGAYADLLT
Sbjct: 541 KRCSNSQGLGAYADLLT 556

[Close]

BLAST of Sed0007535 vs. NCBI nr
Match: XP_031742499.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hypothetical protein Csa_003758 [Cucumis sativus])

HSP 1 Score: 912.1 bits (2356), Expect = 2.3e-261
Identity = 474/562 (84.34%), Postives = 513/562 (91.28%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSF 60
           MEAGLNLLSSSSPF+SRCH RSF+ PSCS     SSSSSSS + MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWP 120
           LSQEQHHECR QSQILKDD++SQMT++RRLIERSV IDEGS  D DHL+WELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEES 180
           GLLSSWP +QM EYK+SS+EK   N + E+LV++EPEN IALAKKALSASKQAA LV+E+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 DLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKT 240
           +LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+ E  N RGK++RRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 TENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE 300
           +E  DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLM 360
           WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420
           KSVEKFKPQA CRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPND 480
           GNYKPSKEELA  VGITVER DKLMFMSRIPRSLQQPVW+DQ+TTFQE+TADSEVDTP+ 
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENR 540
           SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG +KTLLEIGNMFGLS+ERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLGAYADLLT 557
           ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of Sed0007535 vs. NCBI nr
Match: XP_022143971.1 (RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia])

HSP 1 Score: 894.8 bits (2311), Expect = 3.7e-256
Identity = 461/525 (87.81%), Postives = 491/525 (93.52%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ M ++QATPARYFSTSF+ QEQHHECR QSQILKDDKTSQMT+DRRLIERSVSIDEGS
Sbjct: 310 GVYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGS 369

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTS-RELLVEEEPENAI 156
               DHLVWELKHQA EWPGLLSSWPSLQMGEYK+SS+EK  NNTS RE+LVE+EPE+ I
Sbjct: 370 RIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPNNTSRREILVEDEPEDVI 429

Query: 157 ALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRR 216
           ALAKKALSASKQAASLVEES+LVGTNID     SSEDSL KE   VKSTRLQDRR K+RR
Sbjct: 430 ALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEDSLRKEGIAVKSTRLQDRRSKRRR 489

Query: 217 VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQD 276
           VPKHVTT+HETYN RGK+TRRKT EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQD
Sbjct: 490 VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQD 549

Query: 277 LMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI 336
           LMIL+NVKARLQSQF REPTLVEWAEA+G+TCQ LQSQLH FR+SREKLINANLRMVVHI
Sbjct: 550 LMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHI 609

Query: 337 AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTI 396
           AK+YQGRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFATYAYWWIRQSIRKAIFEHSRTI
Sbjct: 610 AKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTI 669

Query: 397 RLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQP 456
           RLPENVYGLLGKVTEAKN+FVR GNYKPSKEELA HVGITVERLDKL+FMSRIPRSLQQP
Sbjct: 670 RLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQP 729

Query: 457 VWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQ 516
           VW+DQ TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLR+GIEDG++
Sbjct: 730 VWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKE 789

Query: 517 KTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           KTLLEIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 790 KTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 834

[Close]

BLAST of Sed0007535 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 879.8 bits (2272), Expect = 1.2e-251
Identity = 450/521 (86.37%), Postives = 486/521 (93.28%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS
Sbjct: 313 GVYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGS 372

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIA 156
            SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK   N   E+LV++EPEN IA
Sbjct: 373 RSDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIA 432

Query: 157 LAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKH 216
           LAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKH
Sbjct: 433 LAKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKH 492

Query: 217 VTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL 276
           VTT+HET N RGK++RRKT+E  DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL
Sbjct: 493 VTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMIL 552

Query: 277 DNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY 336
           DNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Sbjct: 553 DNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQY 612

Query: 337 QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPE 396
            GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPE
Sbjct: 613 LGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPE 672

Query: 397 NVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSD 456
           NVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERLDKLMFMSRIPRSLQQPVW+D
Sbjct: 673 NVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWAD 732

Query: 457 QKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLL 516
           Q TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLL
Sbjct: 733 QDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLL 792

Query: 517 EIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           EIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 793 EIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Sed0007535 vs. NCBI nr
Match: XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 879.8 bits (2272), Expect = 1.2e-251
Identity = 450/521 (86.37%), Postives = 486/521 (93.28%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS
Sbjct: 311 GVYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGS 370

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIA 156
            SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK   N   E+LV++EPEN IA
Sbjct: 371 RSDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIA 430

Query: 157 LAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKH 216
           LAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKH
Sbjct: 431 LAKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKH 490

Query: 217 VTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL 276
           VTT+HET N RGK++RRKT+E  DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL
Sbjct: 491 VTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMIL 550

Query: 277 DNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY 336
           DNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Sbjct: 551 DNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQY 610

Query: 337 QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPE 396
            GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPE
Sbjct: 611 LGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPE 670

Query: 397 NVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSD 456
           NVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERLDKLMFMSRIPRSLQQPVW+D
Sbjct: 671 NVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWAD 730

Query: 457 QKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLL 516
           Q TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLL
Sbjct: 731 QDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLL 790

Query: 517 EIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           EIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 791 EIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 1.5e-143
Identity = 299/570 (52.46%), Postives = 392/570 (68.77%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARY 60
           MEA  NL+SSS  F ++ H +       SS SS SS + + ++  TP          +R+
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK-------SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRH 60

Query: 61  FSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQ 120
           F  S LSQE   E R  S  L+DD+TSQ+T++RR  +  VS  E      +    +L H 
Sbjct: 61  FPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSRED-----EKFEQQLLHS 120

Query: 121 AVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAAS 180
              W  L+S   S    E K+ ++           L + E  + +ALA+KALSASKQAA 
Sbjct: 121 TGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQAAL 180

Query: 181 LVEE-----SDLVGTNIDYSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNS 240
           LV++     SD +  ++  SS  SL ++   V+S R  +RR K RR PK      E Y  
Sbjct: 181 LVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVP 240

Query: 241 RGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ 300
           +    ++K  + +D +D L+LFLWGPETK+LLT +EE+ELI  IQ L+ L+ VK +L+SQ
Sbjct: 241 QKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQ 300

Query: 301 FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDL 360
              EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAKQYQ RGL+  DL
Sbjct: 301 NGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDL 360

Query: 361 LQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVT 420
           LQ+GS+GLMKSVEKFKPQ+ CRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+
Sbjct: 361 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVS 420

Query: 421 EAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTA 480
           EA+   V+ GNY+PSKEELA HVG++ E+LDKL++ +R P S+QQP+WSDQ TTFQE+T 
Sbjct: 421 EARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 480

Query: 481 DSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSR 540
           DS ++TP  SV K+LMR H+RNLL++LSPKERRII+LRFGI+ G+Q++L EIG ++GLS+
Sbjct: 481 DSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSK 540

Query: 541 ERVRQLENRALYKLKRCCNSQGLGAYADLL 556
           ERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 ERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 246.1 bits (627), Expect = 9.2e-64
Identity = 143/402 (35.57%), Postives = 230/402 (57.21%), Query Frame = 0


Query: 155 IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKR 214
           +A++   + + K  AS   +  +     +   E  L +E+ +    V+STR  +R+ ++ 
Sbjct: 166 LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRA 225

Query: 215 R-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQI 274
           + + K  + +         + +R   +  D NDPLR       + KLLTV+EE EL   I
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGI 285

Query: 275 QDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVV 334
           QDL+ L+ ++  L  +  R+PT  +WA A G+  + L+ ++H   + ++K+I +N+R+V+
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345

Query: 335 HIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSR 394
            IAK YQG G++L DL+Q+G  GL++  EKF      +F+TYA+WWI+Q++RK++ + SR
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405

Query: 395 TIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ 454
            IRLP ++     +V EA+          P  EE+AE  G++++RL  ++   + PRSL 
Sbjct: 406 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 465

Query: 455 QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDG 514
           Q +  +Q     EV AD E  T  D + KE MR+ +  +L  L  +E+++IR RFG+EDG
Sbjct: 466 QKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 525

Query: 515 EQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY 552
             KTL EIG M G+SRERVRQ+E+ A  KLK    +  L  Y
Sbjct: 526 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-61
Identity = 126/326 (38.65%), Postives = 206/326 (63.19%), Query Frame = 0


Query: 217 TTMHETYNSRGKETRRKTTENSD--PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMI 276
           T   +  + +  ++RR+T         D +RL+L      +LL   EE EL  +I DL+ 
Sbjct: 53  TDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLE 112

Query: 277 LDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQ 336
           L+ V+ RL  +  R+P   EWAEA+ L     + +LH  R +++K++ +NLR+VV IAK+
Sbjct: 113 LERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKK 172

Query: 337 YQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLP 396
           Y  RGLS  DL+Q+GSLGL+++ EKF  +   +F+TYA WWIRQ+I +AI + SRTIRLP
Sbjct: 173 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 232

Query: 397 ENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWS 456
            ++Y  + ++ +      +    KP++EE+A  + +T+E+L  +   +++P SL+ P+  
Sbjct: 233 VHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGK 292

Query: 457 DQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTL 516
           ++ +   +   +S+ +TP D V K L+R  +  +L  LSP+ER ++RLR+G++DG  KTL
Sbjct: 293 EEDSRLGDF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTL 352

Query: 517 LEIGNMFGLSRERVRQLENRALYKLK 541
            EIG +F ++RER+RQ+E +AL KL+
Sbjct: 353 EEIGQIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 3.6e-60
Identity = 122/300 (40.67%), Postives = 193/300 (64.33%), Query Frame = 0


Query: 242 DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGL 301
           D +RL+L      +LL   EE EL  QI DL+ L+ ++  L  Q  R P+  EWA A+  
Sbjct: 89  DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148

Query: 302 TCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFK 361
                + +L   R +++K++ +NLR+VV IAK+Y  RGLS  DL+Q+GSLGL+++ EKF 
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208

Query: 362 PQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSK 421
            +   +F+TYA WWIRQ+I +AI + SRTIRLP ++Y  + ++ +      +    KP++
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268

Query: 422 EELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQE-VTADSEVDTPNDSVEKEL 481
           EE+A  + +T+E+L  +   +++P SL+ P+  ++ +   + + AD E  TP D V K L
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE--TPEDEVAKNL 328

Query: 482 MRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLK 541
           +R  +  +LS LSP+ER ++RLR+G++DG  KTL EIG +F ++RER+RQ+E +AL KL+
Sbjct: 329 LREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot
Match: Q31ME3 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA2 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.0e-54
Identity = 122/311 (39.23%), Postives = 194/311 (62.38%), Query Frame = 0


Query: 242 DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGL 301
           D +R +L      +LLT +EE     Q+Q LM+L + +  L+ +   EP+  EWA A+ L
Sbjct: 11  DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70

Query: 302 TCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFK 361
             + L  Q+   + ++ K+I ANLR+VV IAK+YQ R +   DL+Q+G+LGL + VEKF 
Sbjct: 71  NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130

Query: 362 PQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSK 421
           P    +F+TYAYWWIRQ+I +AI + SRTIRLP ++   L K+ + +    +      + 
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATA 190

Query: 422 EELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELM 481
            ELAE + + +E++ + + M+R P SL   V   Q T  QE+  D E  +P+D VE+E +
Sbjct: 191 SELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESL 250

Query: 482 RRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKR 541
           RR +RNL++ L+P+++ +I LR+G+++G+  +L ++G    +SRERVR+LE +A+  L+R
Sbjct: 251 RRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRR 310

Query: 542 CCNSQGLGAYA 553
              S+ L  YA
Sbjct: 311 --RSRLLAEYA 318

[Close]

BLAST of Sed0007535 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)

HSP 1 Score: 912.1 bits (2356), Expect = 1.1e-261
Identity = 474/562 (84.34%), Postives = 513/562 (91.28%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSF 60
           MEAGLNLLSSSSPF+SRCH RSF+ PSCS     SSSSSSS + MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWP 120
           LSQEQHHECR QSQILKDD++SQMT++RRLIERSV IDEGS  D DHL+WELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEES 180
           GLLSSWP +QM EYK+SS+EK   N + E+LV++EPEN IALAKKALSASKQAA LV+E+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 DLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKT 240
           +LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+ E  N RGK++RRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 TENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE 300
           +E  DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLM 360
           WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420
           KSVEKFKPQA CRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPND 480
           GNYKPSKEELA  VGITVER DKLMFMSRIPRSLQQPVW+DQ+TTFQE+TADSEVDTP+ 
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENR 540
           SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG +KTLLEIGNMFGLS+ERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLGAYADLLT 557
           ALYKLKRCCNSQGLGAYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of Sed0007535 vs. ExPASy TrEMBL
Match: A0A6J1CRW8 (RNA polymerase sigma factor sigF, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013756 PE=3 SV=1)

HSP 1 Score: 894.8 bits (2311), Expect = 1.8e-256
Identity = 461/525 (87.81%), Postives = 491/525 (93.52%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ M ++QATPARYFSTSF+ QEQHHECR QSQILKDDKTSQMT+DRRLIERSVSIDEGS
Sbjct: 310 GVYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGS 369

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTS-RELLVEEEPENAI 156
               DHLVWELKHQA EWPGLLSSWPSLQMGEYK+SS+EK  NNTS RE+LVE+EPE+ I
Sbjct: 370 RIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPNNTSRREILVEDEPEDVI 429

Query: 157 ALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRR 216
           ALAKKALSASKQAASLVEES+LVGTNID     SSEDSL KE   VKSTRLQDRR K+RR
Sbjct: 430 ALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEDSLRKEGIAVKSTRLQDRRSKRRR 489

Query: 217 VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQD 276
           VPKHVTT+HETYN RGK+TRRKT EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQD
Sbjct: 490 VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQD 549

Query: 277 LMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI 336
           LMIL+NVKARLQSQF REPTLVEWAEA+G+TCQ LQSQLH FR+SREKLINANLRMVVHI
Sbjct: 550 LMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHI 609

Query: 337 AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTI 396
           AK+YQGRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFATYAYWWIRQSIRKAIFEHSRTI
Sbjct: 610 AKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTI 669

Query: 397 RLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQP 456
           RLPENVYGLLGKVTEAKN+FVR GNYKPSKEELA HVGITVERLDKL+FMSRIPRSLQQP
Sbjct: 670 RLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQP 729

Query: 457 VWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQ 516
           VW+DQ TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLR+GIEDG++
Sbjct: 730 VWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKE 789

Query: 517 KTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           KTLLEIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 790 KTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 834

[Close]

BLAST of Sed0007535 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 879.8 bits (2272), Expect = 6.0e-252
Identity = 450/521 (86.37%), Postives = 486/521 (93.28%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS
Sbjct: 313 GVYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGS 372

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIA 156
            SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK   N   E+LV++EPEN IA
Sbjct: 373 RSDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIA 432

Query: 157 LAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKH 216
           LAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKH
Sbjct: 433 LAKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKH 492

Query: 217 VTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL 276
           VTT+HET N RGK++RRKT+E  DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL
Sbjct: 493 VTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMIL 552

Query: 277 DNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY 336
           DNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Sbjct: 553 DNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQY 612

Query: 337 QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPE 396
            GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPE
Sbjct: 613 LGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPE 672

Query: 397 NVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSD 456
           NVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERLDKLMFMSRIPRSLQQPVW+D
Sbjct: 673 NVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWAD 732

Query: 457 QKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLL 516
           Q TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLL
Sbjct: 733 QDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLL 792

Query: 517 EIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           EIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 793 EIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Sed0007535 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 879.8 bits (2272), Expect = 6.0e-252
Identity = 450/521 (86.37%), Postives = 486/521 (93.28%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS
Sbjct: 311 GVYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGS 370

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIA 156
            SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK   N   E+LV++EPEN IA
Sbjct: 371 RSDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIA 430

Query: 157 LAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKH 216
           LAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKH
Sbjct: 431 LAKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKH 490

Query: 217 VTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL 276
           VTT+HET N RGK++RRKT+E  DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL
Sbjct: 491 VTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMIL 550

Query: 277 DNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY 336
           DNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Sbjct: 551 DNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQY 610

Query: 337 QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPE 396
            GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPE
Sbjct: 611 LGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPE 670

Query: 397 NVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSD 456
           NVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERLDKLMFMSRIPRSLQQPVW+D
Sbjct: 671 NVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWAD 730

Query: 457 QKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLL 516
           Q TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLL
Sbjct: 731 QDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLL 790

Query: 517 EIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           EIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 791 EIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of Sed0007535 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.8e-251
Identity = 449/521 (86.18%), Postives = 486/521 (93.28%), Query Frame = 0


Query: 37  GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGS 96
           G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS
Sbjct: 313 GVYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGS 372

Query: 97  GSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIA 156
            SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK   N   E+LV++EPEN IA
Sbjct: 373 RSDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIA 432

Query: 157 LAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKH 216
           LAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQ+RR KKR+VPKH
Sbjct: 433 LAKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKH 492

Query: 217 VTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL 276
           VTT+HET N RGK++RRKT+E  DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL
Sbjct: 493 VTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMIL 552

Query: 277 DNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY 336
           DNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Sbjct: 553 DNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQY 612

Query: 337 QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPE 396
            GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPE
Sbjct: 613 LGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPE 672

Query: 397 NVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSD 456
           NVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERLDKLMFMSRIPRSLQQPVW+D
Sbjct: 673 NVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWAD 732

Query: 457 QKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLL 516
           Q TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLL
Sbjct: 733 QDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLL 792

Query: 517 EIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT 557
           EIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Sbjct: 793 EIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Sed0007535 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 511.1 bits (1315), Expect = 1.1e-144
Identity = 299/570 (52.46%), Postives = 392/570 (68.77%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARY 60
           MEA  NL+SSS  F ++ H +       SS SS SS + + ++  TP          +R+
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK-------SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRH 60

Query: 61  FSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQ 120
           F  S LSQE   E R  S  L+DD+TSQ+T++RR  +  VS  E      +    +L H 
Sbjct: 61  FPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSRED-----EKFEQQLLHS 120

Query: 121 AVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAAS 180
              W  L+S   S    E K+ ++           L + E  + +ALA+KALSASKQAA 
Sbjct: 121 TGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQAAL 180

Query: 181 LVEE-----SDLVGTNIDYSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNS 240
           LV++     SD +  ++  SS  SL ++   V+S R  +RR K RR PK      E Y  
Sbjct: 181 LVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVP 240

Query: 241 RGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ 300
           +    ++K  + +D +D L+LFLWGPETK+LLT +EE+ELI  IQ L+ L+ VK +L+SQ
Sbjct: 241 QKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQ 300

Query: 301 FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDL 360
              EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAKQYQ RGL+  DL
Sbjct: 301 NGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDL 360

Query: 361 LQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVT 420
           LQ+GS+GLMKSVEKFKPQ+ CRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+
Sbjct: 361 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVS 420

Query: 421 EAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTA 480
           EA+   V+ GNY+PSKEELA HVG++ E+LDKL++ +R P S+QQP+WSDQ TTFQE+T 
Sbjct: 421 EARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 480

Query: 481 DSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSR 540
           DS ++TP  SV K+LMR H+RNLL++LSPKERRII+LRFGI+ G+Q++L EIG ++GLS+
Sbjct: 481 DSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSK 540

Query: 541 ERVRQLENRALYKLKRCCNSQGLGAYADLL 556
           ERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 ERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of Sed0007535 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 246.1 bits (627), Expect = 6.5e-65
Identity = 143/402 (35.57%), Postives = 230/402 (57.21%), Query Frame = 0


Query: 155 IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKR 214
           +A++   + + K  AS   +  +     +   E  L +E+ +    V+STR  +R+ ++ 
Sbjct: 166 LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRA 225

Query: 215 R-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQI 274
           + + K  + +         + +R   +  D NDPLR       + KLLTV+EE EL   I
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGI 285

Query: 275 QDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVV 334
           QDL+ L+ ++  L  +  R+PT  +WA A G+  + L+ ++H   + ++K+I +N+R+V+
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345

Query: 335 HIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSR 394
            IAK YQG G++L DL+Q+G  GL++  EKF      +F+TYA+WWI+Q++RK++ + SR
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405

Query: 395 TIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ 454
            IRLP ++     +V EA+          P  EE+AE  G++++RL  ++   + PRSL 
Sbjct: 406 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 465

Query: 455 QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDG 514
           Q +  +Q     EV AD E  T  D + KE MR+ +  +L  L  +E+++IR RFG+EDG
Sbjct: 466 QKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 525

Query: 515 EQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY 552
             KTL EIG M G+SRERVRQ+E+ A  KLK    +  L  Y
Sbjct: 526 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Sed0007535 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-40
Identity = 119/374 (31.82%), Postives = 190/374 (50.80%), Query Frame = 0


Query: 180 TNIDYSSEDS--LSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTEN 239
           T +D   + S  +  E+  ++S + + RR ++RRV        E  N+ G E   +T   
Sbjct: 55  TTVDRVVDSSVMIKPEKWGIQSEKRRKRR-RRRRVGYERLEPEEEENA-GVEAEAET--- 114

Query: 240 SDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAE 299
                 + + + G      L+  EE +L + +++   L+N+   ++     E   V  A 
Sbjct: 115 ------ISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVE---ENEMVSVLLAS 174

Query: 300 ALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSV 359
             G   +     L   + +REK+     R+VV IA  YQG+GL+L DL+Q+GS+GL++  
Sbjct: 175 GRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGA 234

Query: 360 EKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNY 419
           E+F P    + +TY YWWI+Q+I +AI   SR ++LP +++ L  KV EA N   R    
Sbjct: 235 ERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRR 294

Query: 420 KPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVE 479
           +PS EE+AEH+ + V  +   +  SR P SL +    + + T QE+    +   P + V+
Sbjct: 295 QPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVK 354

Query: 480 KELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALY 539
           +E M+  I  LL  L+ +E R++ L FG+      +  EIG    LSRERVRQ+   AL 
Sbjct: 355 REHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALK 414

Query: 540 KLKRCCNSQGLGAY 552
           KL+   N   L  Y
Sbjct: 415 KLRNVHNVNDLKIY 414

[Close]

BLAST of Sed0007535 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-36
Identity = 79/293 (26.96%), Postives = 168/293 (57.34%), Query Frame = 0


Query: 260 QEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREK 319
           + E+E+   ++ +  ++ ++ +L+ +  +  +L  WA A G+  + L   LH     R++
Sbjct: 276 RNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDE 335

Query: 320 LINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQS 379
           L+ +   +V+ +A+ Y+G G++  DL+Q G +G+++  E+F      +F+TY  +WIR+S
Sbjct: 336 LVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKS 395

Query: 380 IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAEHVGITVERLDKL 439
           +   +  H+R + +P ++   +  + +A+     +   K  + EE+A+  G +V+++   
Sbjct: 396 MSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAA 455

Query: 440 MFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERR 499
               ++  S+ + V     T F E T D+ +++P ++V ++  RR I +LL  L P+E++
Sbjct: 456 NQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQ 515

Query: 500 IIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY 552
           ++ LR+G++D   K+L EIG +  +S+E +R++E RA+ KL+   N++ L  Y
Sbjct: 516 VMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYY 568

[Close]

BLAST of Sed0007535 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-30
Identity = 124/434 (28.57%), Postives = 219/434 (50.46%), Query Frame = 0


Query: 131 VSSMEKHF--NNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSSED 190
           V+S EK +  N T +EL  EEE  +   L    +S S +A  L+++S ++  + + S E 
Sbjct: 80  VASTEKPWLPNGTDKEL--EEECYDDDDL----ISHSVEAILLLQKS-MLEKSWNLSFEK 139

Query: 191 SLSKERRTVKSTRLQDRRPKKRRVP----KHVTTMHETYNSRGKE--TRRKTTENSDPND 250
           ++S E     + R       K+++P      ++       ++ K   T  K   +     
Sbjct: 140 AVSSEYPGKGTIR-------KKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSDVSSGK 199

Query: 251 PLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLT 310
            +R ++ G  ++ +L+  E   L  +I+  + LD+ K+RL+ +   EP+  + A +L ++
Sbjct: 200 QVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKIS 259

Query: 311 CQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKP 370
              LQ+ L    ++REKL  +N+R+V+ IA++Y   G  + DL+Q G +GL++ +EKF  
Sbjct: 260 RAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDS 319

Query: 371 QARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKE 430
               R +TY YWWIRQ + +A+ ++SRT+RLP +++  LG +  AK      G   PS +
Sbjct: 320 SKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKG-ITPSID 379

Query: 431 ELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQK----TTFQEVTADSEVD-TPNDSVE 490
            +AE + ++ +++           SL +  +         T     AD+ ++  P    +
Sbjct: 380 RIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYD 439

Query: 491 KELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRAL 550
              ++  +  L+S  L  +E+ IIRL +G+ D E  T  +I    GLSRERVRQ+   AL
Sbjct: 440 DLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 497

The following BLAST results are available for this feature:

BLAST of Sed0007535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882876.1	9.2e-271	87.97	RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]	[more]
XP_031742499.1	2.3e-261	84.34	RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hy...	[more]
XP_022143971.1	3.7e-256	87.81	RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia]	[more]
XP_016902883.1	1.2e-251	86.37	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
XP_016902885.1	1.2e-251	86.37	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m...	[more]

BLAST of Sed0007535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD95	1.5e-143	52.46	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O22056	9.2e-64	35.57	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	2.5e-61	38.65	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	3.6e-60	40.67	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q31ME3	3.0e-54	39.23	RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]

BLAST of Sed0007535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ6	1.1e-261	84.34	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1	[more]
A0A6J1CRW8	1.8e-256	87.81	RNA polymerase sigma factor sigF, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A1S4E3S8	6.0e-252	86.37	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S4E4I4	6.0e-252	86.37	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	1.8e-251	86.18	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Sed0007535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36990.1	1.1e-144	52.46	RNApolymerase sigma-subunit F	[more]
AT1G08540.1	6.5e-65	35.57	RNApolymerase sigma subunit 2	[more]
AT5G13730.1	1.9e-40	31.82	sigma factor 4	[more]
AT3G53920.1	4.9e-36	26.96	RNApolymerase sigma-subunit C	[more]
AT1G64860.1	5.2e-30	28.57	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 513..528 score: 55.2 coord: 492..504 score: 43.67 coord: 368..376 score: 75.05 coord: 528..539 score: 52.74 coord: 344..357 score: 53.13
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 513..539
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 344..357
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 401..475 e-value: 7.0E-16 score: 58.1
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 317..542 e-value: 2.3E-36 score: 122.9
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 3..556 e-value: 5.1E-156 score: 518.8
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 488..540 e-value: 1.4E-17 score: 62.9
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 320..389 e-value: 1.9E-16 score: 59.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 393..469 e-value: 1.1E-8 score: 37.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 470..553 e-value: 2.2E-25 score: 90.2
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 105..392 e-value: 3.2E-40 score: 140.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..215
None	No IPR available	PANTHER	PTHR30603:SF50	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	coord: 47..555
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 47..555
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 482..540 e-value: 1.0799E-11 score: 57.8846
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 241..390
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 451..550
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 393..466

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007535.1	Sed0007535.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity