Sed0007502 (gene) Chayote v1

Overview
NameSed0007502
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 5735965 .. 5736783 (+)
RNA-Seq ExpressionSed0007502
SyntenySed0007502
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCATCTCTTATTCCTCTATATATAGAGTTCATTTGCCCCTCCTAATTATTACAATTGATCAAAACAACAAAATCTCATCTTTCTTTCATTTTCTCTCTGAATCAGATCTGCAAATTAAATATGATGAGCACCATAATTTCAAGGCTGAACAAAAAACTACAGGCGGTTGAAATCAGCAACCGCTGCAGACGATCGAAGAAGTACACGCCATCATACATTTACAGAGACGATCGGAGCACGCAGTTGCCCGAGACGAAGAAAGCGAAGAAGAGAGTGAGATTTGCCGAGACCGAGCCTGCGATAATCGCCGTTGTCGGAGAGGAGGAAACACAGAAAACGGGGGTGAGAATTACGGTGAAGTTGACGAAGCAGGAAGCGGATCGGATGCTTTCGAGGTGCTCGAATGGCGATTTCGGAGATGTCGCTTGTGAGCTCATGCGGATTCCTAATGCTCGTGTTAGGTCTTCTGTACTGGCTAGTTGAGCTTTTTTTTAACCCTTTCTTCTTAGAGTTGTTCTACAGCTTGATTCTGTTCATGATTTTTTTGGGGGTTTAATTGGTGTAATAGGATATAGAGTTGTAGGTTTTTTGTCTCTTTAGATCCAGAGATTCAAATCTATTCACTATTCATATATGATTTAGAGTTTAAATTATGTATTATTGTATAGTATTAAGTTTTGGAGGAATGATAGGTTAATGAATTTTTTTTTTTTAGTACTTAGTGGGAGGAGAGGGACCAACAAATATCGATTTCCGGACTCGAACTCGTGATCGTGGAGTTGAAATTGATTAATACCAAACAAGATAACTAACTGCG

mRNA sequence

TCTCATCTCTTATTCCTCTATATATAGAGTTCATTTGCCCCTCCTAATTATTACAATTGATCAAAACAACAAAATCTCATCTTTCTTTCATTTTCTCTCTGAATCAGATCTGCAAATTAAATATGATGAGCACCATAATTTCAAGGCTGAACAAAAAACTACAGGCGGTTGAAATCAGCAACCGCTGCAGACGATCGAAGAAGTACACGCCATCATACATTTACAGAGACGATCGGAGCACGCAGTTGCCCGAGACGAAGAAAGCGAAGAAGAGAGTGAGATTTGCCGAGACCGAGCCTGCGATAATCGCCGTTGTCGGAGAGGAGGAAACACAGAAAACGGGGGTGAGAATTACGGTGAAGTTGACGAAGCAGGAAGCGGATCGGATGCTTTCGAGGTGCTCGAATGGCGATTTCGGAGATGTCGCTTGTGAGCTCATGCGGATTCCTAATGCTCGTGTTAGGTCTTCTGTACTGGCTAGTTGAGCTTTTTTTTAACCCTTTCTTCTTAGAGTTGTTCTACAGCTTGATTCTGTTCATGATTTTTTTGGGGGTTTAATTGGTGTAATAGGATATAGAGTTGTAGGTTTTTTGTCTCTTTAGATCCAGAGATTCAAATCTATTCACTATTCATATATGATTTAGAGTTTAAATTATGTATTATTGTATAGTATTAAGTTTTGGAGGAATGATAGGTTAATGAATTTTTTTTTTTTAGTACTTAGTGGGAGGAGAGGGACCAACAAATATCGATTTCCGGACTCGAACTCGTGATCGTGGAGTTGAAATTGATTAATACCAAACAAGATAACTAACTGCG

Coding sequence (CDS)

ATGATGAGCACCATAATTTCAAGGCTGAACAAAAAACTACAGGCGGTTGAAATCAGCAACCGCTGCAGACGATCGAAGAAGTACACGCCATCATACATTTACAGAGACGATCGGAGCACGCAGTTGCCCGAGACGAAGAAAGCGAAGAAGAGAGTGAGATTTGCCGAGACCGAGCCTGCGATAATCGCCGTTGTCGGAGAGGAGGAAACACAGAAAACGGGGGTGAGAATTACGGTGAAGTTGACGAAGCAGGAAGCGGATCGGATGCTTTCGAGGTGCTCGAATGGCGATTTCGGAGATGTCGCTTGTGAGCTCATGCGGATTCCTAATGCTCGTGTTAGGTCTTCTGTACTGGCTAGTTGA

Protein sequence

MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQLPETKKAKKRVRFAETEPAIIAVVGEEETQKTGVRITVKLTKQEADRMLSRCSNGDFGDVACELMRIPNARVRSSVLAS
Homology
BLAST of Sed0007502 vs. NCBI nr
Match: KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-32
Identity = 89/134 (66.42%), Postives = 102/134 (76.12%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKK--YTPSYIYRDD--------RSTQLPETKKAKK 60
           M+S +IS LNKKLQAVEISNRCRR+KK   T +Y+YRDD         S Q PE KK KK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK 60

Query: 61  RVRFAETEPAIIAVVGEEETQKTG-VRITVKLTKQEADRMLSRCSNG---DFGDVACELM 120
           RVRFAETEP IIA+  EEET+K   VRITVK+TKQEA+RMLSRCS G   + GD ACELM
Sbjct: 61  RVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM 120

BLAST of Sed0007502 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQ-----------LPETKKAK 60
           M+S  I  LNKKLQAVEISNRCRR+KK T  Y+YRDD S +            PE KK K
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRRTKKTT--YVYRDDLSKKKQSPPPSSSQPQPEIKKVK 60

Query: 61  KRVRFAETEPAIIAVVG------EEETQKTGVRITVKLTKQEADRMLSRCSNG---DFGD 120
           KRVRFA+TEP IIA+        EEET+K  VRITVKLTK+EA+RMLSRCS+G   +FGD
Sbjct: 61  KRVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGD 120

BLAST of Sed0007502 vs. NCBI nr
Match: XP_023522331.1 (uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 84/134 (62.69%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQ---------LPETKKAKKR 60
           M+  +IS LNKKLQAVEISNRCRR+KK T   +YR D S +          PE +K KKR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTT--NVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DFGDVAC 118
           VRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCSNG   +FGDVA 
Sbjct: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVAS 120

BLAST of Sed0007502 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRST--------------QLPETK 60
           M+S +IS LNKKLQAVEISNRC+R+KK T  Y+YRDD +               Q  E K
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT--YVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KAKKRVRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DF 120
           K KKRVRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCSN    +F
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

BLAST of Sed0007502 vs. NCBI nr
Match: XP_023552096.1 (uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 83/134 (61.94%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQ---------LPETKKAKKR 60
           M+  +IS LNKKLQAV+ISNRCRR+KK T   +YR D S +          PE +K KKR
Sbjct: 1   MIGNLISSLNKKLQAVDISNRCRRTKKTT--NVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DFGDVAC 118
           VRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCSNG   +FGDVA 
Sbjct: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVAS 120

BLAST of Sed0007502 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.0e-28
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRST--------------QLPETK 60
           M+S +IS LNKKLQAVEISNRC+R+KK T  Y+YRDD +               Q  E K
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT--YVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KAKKRVRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DF 120
           K KKRVRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCSN    +F
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

BLAST of Sed0007502 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.0e-28
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRST--------------QLPETK 60
           M+S +IS LNKKLQAVEISNRC+R+KK T  Y+YRDD +               Q  E K
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT--YVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KAKKRVRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DF 120
           K KKRVRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCSN    +F
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

BLAST of Sed0007502 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 83/134 (61.94%), Postives = 96/134 (71.64%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQ---------LPETKKAKKR 60
           M+  +IS LNKKLQAVEISNRCRR+KK T   +YR D S +          PE +K KKR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTT--NVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DFGDVAC 118
           VRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCS+G   +FGDVA 
Sbjct: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120

BLAST of Sed0007502 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.5e-27
Identity = 83/136 (61.03%), Postives = 96/136 (70.59%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRSTQ-----------LPETKKAK 60
           M+  +IS LNKKLQAVEISNRCRR+KK T   +YR D S +            PE +K K
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTT--NVYRRDMSKKKQPQSPSPSQGKPEIEKVK 60

Query: 61  KRVRFAETEPAIIAV-----VGEEETQKTGVRITVKLTKQEADRMLSRCSNG---DFGDV 118
           KRVRFA+TEP IIA+       EEET+K  VRITVKLTKQEA+RMLSRCS+G   +FGDV
Sbjct: 61  KRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDV 120

BLAST of Sed0007502 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.5e-27
Identity = 83/144 (57.64%), Postives = 100/144 (69.44%), Query Frame = 0

Query: 1   MMSTIISRLNKKLQAVEISNRCRRSKKYTPSYIYRDDRST--------------QLPETK 60
           M+S +IS LNKKLQAVEIS+RC+R+KK   +Y+YRD+ +               Q  E K
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK--TAYVYRDNLTKKNHSPPSSSSSPQHQPEEIK 60

Query: 61  KAKKRVRFAETEPAIIAVVG-------EEETQKTGVRITVKLTKQEADRMLSRCSNG--- 120
           K KKRVRFA+TEP IIA+         E ET+K  VRITVKLTKQEA+RMLSRCSNG   
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVL 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600516.12.5e-3266.42hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038906331.18.9e-3061.43uncharacterized protein LOC120092170 [Benincasa hispida][more]
XP_023522331.11.1e-2762.69uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo][more]
XP_008451951.11.9e-2759.15PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc... [more]
XP_023552096.12.4e-2761.94uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D2469.0e-2859.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BS409.0e-2859.15uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... [more]
A0A6J1EU862.0e-2761.94uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... [more]
A0A6J1JBA84.5e-2761.03uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... [more]
A0A0A0KYE14.5e-2757.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36782BNAC03G62080D PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007502.1Sed0007502.1mRNA