Sed0007500 (gene) Chayote v1

Overview


Name	Sed0007500
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 29203787 .. 29204911 (+)
RNA-Seq Expression	Sed0007500
Synteny	Sed0007500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAAAGTTATAGAAGATTTGAAGAAAGGACAAGAGGAGCTCAAGGCTGGACAAAAGGAGCTCAAGGTTGTTCAAGCCAAAATTTTAAAAGTTTTGAATAAGTTGATGGAAGTAAACAAAGAAGCTCAAGTAGATGATCAAGTTGAAGCTCCAAAGGTACGTTTTTATACTTGTCATTCTTATGATTTTTTAATGATCAATTGTACTGTACTGTACTAAGTTGTAGGAATTTGCATTAATAAATTGACTGGTTCCTAGTAGTTTAGACTTGTATAGTACCGATCTGTTATGAAATTTGAATTGATGTAACTTTCTAAGATTGCTGGTGAAAGGATTGAGTGTAAGTGATAGACGTCTATCAGTTCCATTCCAATGATAGACTATTACCAGTTCTACCAAGTTCATTGACTTCTTGAATTGGTTGAAGTTAACAATTACCATTGATCTCTCCGCAAGATGGAAAACCTTTTGTTGGGTCCTTACACTGTTATATATGTTTATTTACTTCTTTCATATTGCTTCTTATAAATGGTAGGTGGAGATTGAAGATGATATTTCTGGTAGTTTAGACTTATACAATACTGATCTGTTATGAAATTTGAAGTGTTGTAGCTTCCTAAGGTTGCTGGTGAAAGGAATGAGTGGAACTGATAGATGTCTATCACTTCTACTGATAGAAGTCTATCTGTTCCACTGATAGAAGTCTATCAGTTCCACTGATAGACGTCTACCAGTTCCACCCAGTTGATTGTCTTTTAGAATTGGTTTAAGTTAACAATTACCATTGATCTCTCTACAAGATGAGAAACATTTTTTTGGGTCTTGACACTATTAGTTTCAATTTGACTTATGACTTATTAATCTAATTGATCTGCTTAAAGTGGTAGGAAATAAGGCTTTGGTTTACACACATAGGAAGTATTGTTTTCGCTGATTTTTTCATAGTAATTTCGTCTCCCTAAAGATTTTTTTATGAATCTAATTTTTGCTGCTTTGTTCTTGAAGGAAAAAGGTAGTGAAAAAAATCAAGAAGAAATATATGACAAAGTAGAAGAAAAAGAAGAAGAAAAGGAAGAATACCAAAGAGAAGAACCGGTTAAAGAAGACGAGGAAAAAGAATAA

mRNA sequence

ATGTGTAAAGTTATAGAAGATTTGAAGAAAGGACAAGAGGAGCTCAAGGCTGGACAAAAGGAGCTCAAGGTTGTTCAAGCCAAAATTTTAAAAGTTTTGAATAAGTTGATGGAAGTAAACAAAGAAGCTCAAGTAGATGATCAAGTTGAAGCTCCAAAGGAAAAAGGTAGTGAAAAAAATCAAGAAGAAATATATGACAAAGTAGAAGAAAAAGAAGAAGAAAAGGAAGAATACCAAAGAGAAGAACCGGTTAAAGAAGACGAGGAAAAAGAATAA

Coding sequence (CDS)

ATGTGTAAAGTTATAGAAGATTTGAAGAAAGGACAAGAGGAGCTCAAGGCTGGACAAAAGGAGCTCAAGGTTGTTCAAGCCAAAATTTTAAAAGTTTTGAATAAGTTGATGGAAGTAAACAAAGAAGCTCAAGTAGATGATCAAGTTGAAGCTCCAAAGGAAAAAGGTAGTGAAAAAAATCAAGAAGAAATATATGACAAAGTAGAAGAAAAAGAAGAAGAAAAGGAAGAATACCAAAGAGAAGAACCGGTTAAAGAAGACGAGGAAAAAGAATAA

Protein sequence

MCKVIEDLKKGQEELKAGQKELKVVQAKILKVLNKLMEVNKEAQVDDQVEAPKEKGSEKNQEEIYDKVEEKEEEKEEYQREEPVKEDEEKE

Homology

The following BLAST results are available for this feature:

BLAST of Sed0007500 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0007500 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0007500 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0007500 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..88
None	No IPR available	COILS	Coil	Coil	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007500.1	Sed0007500.1	mRNA