Sed0007470 (gene) Chayote v1

Overview
NameSed0007470
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG04: 43513608 .. 43516420 (+)
RNA-Seq ExpressionSed0007470
SyntenySed0007470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGAATGAGACCCAATGTCGAAGACGACTGTCTGATGAAGATGATTTTTCCTGAAAGTTGTGGCTTAATCGAGAAATCGATTCCTCAAAACTTCGATCCCATTCTCGACTCATATTCCATGAAACCCAGAAACCCTAATTCTTTTGCTCTGTGAACTCTTCGTGAAGGCCATTTTCACCAGTGACTGTAGTTTTTTCTGCTCTTACTGGGCTTTCTCCGGCGGTGTTCGCCGTCTGGAATCGAAAATGATCGCCATGTCCAGGTACTCGAGGCTTGATATTGATACCAATTGTATGGTTCGAACCGCTTTTTCATTTACTCACATTTTGTTTATCTCAGTTCTGGAAGGTCATGTCGATTTAGGAACTTGCTGTATACCAGGAATGTTTTGCATTACTCGTACAATGTGAGTGCAACCTCTAATTTCTTTGTTTTTTGTTTGTTTGTGTAGTTCTTAGCTCCGTGAAGTTGATGATTTTGCTATGAACTGTGATTGTGTTTGTTCCCAATTACAATGAACCGATTTTTTTTTTTTTTTTTTAATCTAGGGGTGTTGTTTTTTCCGTTTCTATGGAGAATGAAACAATTTTATAATCGAAACAAAAGTTTGTCCATTGGTTTTGAATTGAGCATTATCTCAATGTTTATGCCTTTGTGGTGTCCGTAGAATTTTCGAATGCTCGGATTGCTTGAAGTTTTCTTTCCGTTTATTTGTTAATTGAGTTTTGAAGTAGAGGGATAGGGTGTTTATGTCCAAACTAGAATTCATGGCTATAGACTTTTTGCTTCTGCCCTGCTGATCCAATCAACACTGCTGGGGATAGTATGCAGATGCTATAGTTATAGATAGGTGAAATCCATATCATTTCTCGAACTCTCTTCTAGGTCTTCATTATGAAGACTTTTTGGATCATTTTTATTAAGGAAGTCTATGATTGGGTAGGCTTTCATGTTTTTCTGGAGCTTATGTTGAATATTTCTTCACATTATTTTCCTTCATAACAGTTATTGGAAACCCGGATTTTGGTAGCTCAATGGTCATTTAATAACTCACCAATGCCATTTATCTTTCATAAGAAATTCTTCTATTCAACTTGGTAAAGAATTACATCTTATCACCTTCACATCTTACTTGCATAATCTTTTAGATGATTACACATGACTTTTACATTGCAAAATTTATTGTTTCTTATTCCAAAAAAAGGCATACTTCACAAAGCAACCATTGAATTTCGTTTCTACGTGTCTAATACAGAATAGCGTTGCATCTGTCCCAGCTGGCAACCCTCAAATCTGGCTGTTTTTTGCCCTCATGAGTAAACGCTTTGATCATCAGTCATCTACTACAGATATCTCTCCTGATGACGAAAAAGTGTGTGATGAAGTCGTTAATCAGATTATCATCACGAGGGAAAATCGCGAAACCTTTGATGTTTGCATTGATAAGATGTGTAGATCTGGAAATCTTGCAGCTGCCGCCCTATTACTTAAATCTTCATGCGATAGGAAAATATCTCTTAGCTCCACCAAAGCATATGATATGGTTTTGCTTGCAGCATGTGAAAGTGGGGACACTGCCCTTTTATGTCAAGTTTTTAAAGATTGCTTGGTTTCCTGTAAATCATTGAGTTCAACCTCTTACATGAATTTTGCCAATGCCTTTACCAGGAGTACAGATGATATTAACAAGCTACTGGAATATGTCAAAGAAGTAATTGAGATGACCTTTCCAAACTTAATAGTTATAAACCGAATTATCTTGGCCTTCTCCAAATGTAGGGAGATTGATATAGCTCTTCAGATATTTGATCAGATGAAGCAGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCTGTGCAGGTCGCATGGATGAAACTCTTCATACGTTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGTTAAATAGCTTAAGGAAGGTGGGAAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAAAATTGAACCTGATTTACTTACTTATACTGCTTTAATAGAGAGTTTTGGGCGATCTGGAAACATAGAGGAAGCCTTGACACTTCTGAGGGAGATGAAGCTTAAGAATGTGCGTCCTTCAAGCTATATCTTTAAATCTTTGGTCAGTAATTCAATGAAGATTGGGAAGGTGGAGCTGGCAATGAATCTTCTCAAGGAGATGAAATTAAATGATTTAAATCTTGCTGGCCCAAAGGATTTTAAACGAAAAAAGAGATAAACAATTACAAGGTTTTACGTAGTAACTCGAGGTTGAAAAGCCTGCGGGGATGACTTCAAACTTCAACTTGAGCCTATGCCAGACTGATTCTACCAGCAGGTAATTTATGTAACCATTTATCTATCTTTTTTAATCTTACATGATGTCAAAACCTTTTTAAAAAGTATACCTATGGAGTTGGGATTCGTTTTAGGACTAATTTAGGAAAACCCAAAATGAGTATTTAGCTCATGTAAGATGTAAACGAGGTGATCAACAAGAGCAAGAGCTCTAATAGTATCATGTACAAGTTAGTAACCAAGAAGTTATAGGTTTGAATTCCCCCAATCCCCAAATATTGTTGAATTCTAAAAGATGTAACCGAGGTGTTTTGAGTCATGTTCCAACAATGTTTCATTGTCTCTTTGTTGGACAGGTCTACAGAGAATGATGATGGCTCAAGTGAAGAGCCGGAGAAAAATCTGTGACCGATTGTGGAGGATTTGCTTGAAAATTATAAGTTAAAATACCATTTCCGTCCCT

mRNA sequence

TAAGAATGAGACCCAATGTCGAAGACGACTGTCTGATGAAGATGATTTTTCCTGAAAGTTGTGGCTTAATCGAGAAATCGATTCCTCAAAACTTCGATCCCATTCTCGACTCATATTCCATGAAACCCAGAAACCCTAATTCTTTTGCTCTGTGAACTCTTCGTGAAGGCCATTTTCACCAGTGACTGTAGTTTTTTCTGCTCTTACTGGGCTTTCTCCGGCGGTGTTCGCCGTCTGGAATCGAAAATGATCGCCATGTCCAGTTCTGGAAGGTCATGTCGATTTAGGAACTTGCTGTATACCAGGAATGTTTTGCATTACTCGTACAATAATAGCGTTGCATCTGTCCCAGCTGGCAACCCTCAAATCTGGCTGTTTTTTGCCCTCATGAGTAAACGCTTTGATCATCAGTCATCTACTACAGATATCTCTCCTGATGACGAAAAAGTGTGTGATGAAGTCGTTAATCAGATTATCATCACGAGGGAAAATCGCGAAACCTTTGATGTTTGCATTGATAAGATGTGTAGATCTGGAAATCTTGCAGCTGCCGCCCTATTACTTAAATCTTCATGCGATAGGAAAATATCTCTTAGCTCCACCAAAGCATATGATATGGTTTTGCTTGCAGCATGTGAAAGTGGGGACACTGCCCTTTTATGTCAAGTTTTTAAAGATTGCTTGGTTTCCTGTAAATCATTGAGTTCAACCTCTTACATGAATTTTGCCAATGCCTTTACCAGGAGTACAGATGATATTAACAAGCTACTGGAATATGTCAAAGAAGTAATTGAGATGACCTTTCCAAACTTAATAGTTATAAACCGAATTATCTTGGCCTTCTCCAAATGTAGGGAGATTGATATAGCTCTTCAGATATTTGATCAGATGAAGCAGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCTGTGCAGGTCGCATGGATGAAACTCTTCATACGTTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGTTAAATAGCTTAAGGAAGGTGGGAAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAAAATTGAACCTGATTTACTTACTTATACTGCTTTAATAGAGAGTTTTGGGCGATCTGGAAACATAGAGGAAGCCTTGACACTTCTGAGGGAGATGAAGCTTAAGAATGTGCGTCCTTCAAGCTATATCTTTAAATCTTTGGTCAGTAATTCAATGAAGATTGGGAAGGTGGAGCTGGCAATGAATCTTCTCAAGGAGATGAAATTAAATGATTTAAATCTTGCTGGCCCAAAGGATTTTAAACGAAAAAAGAGATAAACAATTACAAGGTTTTACGTAGTAACTCGAGGTTGAAAAGCCTGCGGGGATGACTTCAAACTTCAACTTGAGCCTATGCCAGACTGATTCTACCAGCAGGTCTACAGAGAATGATGATGGCTCAAGTGAAGAGCCGGAGAAAAATCTGTGACCGATTGTGGAGGATTTGCTTGAAAATTATAAGTTAAAATACCATTTCCGTCCCT

Coding sequence (CDS)

ATGATCGCCATGTCCAGTTCTGGAAGGTCATGTCGATTTAGGAACTTGCTGTATACCAGGAATGTTTTGCATTACTCGTACAATAATAGCGTTGCATCTGTCCCAGCTGGCAACCCTCAAATCTGGCTGTTTTTTGCCCTCATGAGTAAACGCTTTGATCATCAGTCATCTACTACAGATATCTCTCCTGATGACGAAAAAGTGTGTGATGAAGTCGTTAATCAGATTATCATCACGAGGGAAAATCGCGAAACCTTTGATGTTTGCATTGATAAGATGTGTAGATCTGGAAATCTTGCAGCTGCCGCCCTATTACTTAAATCTTCATGCGATAGGAAAATATCTCTTAGCTCCACCAAAGCATATGATATGGTTTTGCTTGCAGCATGTGAAAGTGGGGACACTGCCCTTTTATGTCAAGTTTTTAAAGATTGCTTGGTTTCCTGTAAATCATTGAGTTCAACCTCTTACATGAATTTTGCCAATGCCTTTACCAGGAGTACAGATGATATTAACAAGCTACTGGAATATGTCAAAGAAGTAATTGAGATGACCTTTCCAAACTTAATAGTTATAAACCGAATTATCTTGGCCTTCTCCAAATGTAGGGAGATTGATATAGCTCTTCAGATATTTGATCAGATGAAGCAGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCTGTGCAGGTCGCATGGATGAAACTCTTCATACGTTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGTTAAATAGCTTAAGGAAGGTGGGAAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAAAATTGAACCTGATTTACTTACTTATACTGCTTTAATAGAGAGTTTTGGGCGATCTGGAAACATAGAGGAAGCCTTGACACTTCTGAGGGAGATGAAGCTTAAGAATGTGCGTCCTTCAAGCTATATCTTTAAATCTTTGGTCAGTAATTCAATGAAGATTGGGAAGGTGGAGCTGGCAATGAATCTTCTCAAGGAGATGAAATTAAATGATTTAAATCTTGCTGGCCCAAAGGATTTTAAACGAAAAAAGAGATAA

Protein sequence

MIAMSSSGRSCRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVNQIIITRENRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNLIVINRIILAFSKCREIDIALQIFDQMKQSCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFKRKKR
Homology
BLAST of Sed0007470 vs. NCBI nr
Match: XP_022147838.1 (pentatricopeptide repeat-containing protein At1g11900-like isoform X1 [Momordica charantia])

HSP 1 Score: 558.9 bits (1439), Expect = 3.3e-155
Identity = 295/373 (79.09%), Postives = 322/373 (86.33%), Query Frame = 0

Query: 6   SSGRSCRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDD 65
           SSG SCRFRNL  TR VLHY Y N +AS P G+PQIWLFFA M KRF HQS  TD SPD+
Sbjct: 31  SSGGSCRFRNLPSTRKVLHYPYTNCIASFPVGDPQIWLFFANMGKRFSHQSYPTDTSPDE 90

Query: 66  EKVCDEVVNQIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTK 125
           EKV DEV+NQI+ TR+N      ETFD CI KMCRSGNLAAAA LLKS CD KISLS++K
Sbjct: 91  EKVIDEVLNQIVATRDNASRSSHETFDACIYKMCRSGNLAAAAQLLKSLCDGKISLSASK 150

Query: 126 AYDMVLLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKE 185
           AYDMVLLAA E GDT+L CQVFKDCLVSCKSLSS +YMN A AF  ST+D+ KLLEYVKE
Sbjct: 151 AYDMVLLAASERGDTSLFCQVFKDCLVSCKSLSSATYMNLAKAFI-STNDVGKLLEYVKE 210

Query: 186 VIEMTFPNLIVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRM 245
           VIEMTFPNLIVIN+II AFSKCREI+ AL+IF+QMK  SC+PDLYTYNIILDMLG AGRM
Sbjct: 211 VIEMTFPNLIVINKIIFAFSKCREIEKALRIFNQMKLLSCKPDLYTYNIILDMLGRAGRM 270

Query: 246 DETLHTFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTAL 305
           DE LH FVSMKE GIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTA+
Sbjct: 271 DEILHMFVSMKEAGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTAM 330

Query: 306 IESFGRSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDL 365
           IESFGRSGNIEEAL LLREMKLKNV PS+YI+KSL+SNSMKIGKVELAM+LL E+KL+  
Sbjct: 331 IESFGRSGNIEEALGLLREMKLKNVYPSNYIYKSLISNSMKIGKVELAMSLLNELKLSGS 390

Query: 366 NLAGPKDFKRKKR 373
           NLA PKDFKR+KR
Sbjct: 391 NLANPKDFKRRKR 402

BLAST of Sed0007470 vs. NCBI nr
Match: XP_022964991.1 (pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata])

HSP 1 Score: 549.7 bits (1415), Expect = 2.0e-152
Identity = 295/367 (80.38%), Postives = 320/367 (87.19%), Query Frame = 0

Query: 11  CRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCD 70
           C++R LL  RNVLHYSY NS+ SVP GNPQ WL +A+  +RF HQ STT+ISPD+EKV D
Sbjct: 5   CKWR-LLSARNVLHYSYTNSITSVPVGNPQNWLLYAI--RRFGHQPSTTNISPDEEKVED 64

Query: 71  EVVNQIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMV 130
           EV+NQI  TREN      ETFD+CIDKMCRS NL AAA LLKSSCDRKISLSS+KAYDMV
Sbjct: 65  EVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMV 124

Query: 131 LLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMT 190
           LLAA E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMT
Sbjct: 125 LLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMT 184

Query: 191 FPNLIVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLH 250
           FPN +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH
Sbjct: 185 FPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILH 244

Query: 251 TFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFG 310
            FVSMKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFG
Sbjct: 245 MFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFG 304

Query: 311 RSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGP 370
           RSGN+EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGP
Sbjct: 305 RSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGP 364

Query: 371 KDFKRKK 372
           KDFKRK+
Sbjct: 365 KDFKRKR 367

BLAST of Sed0007470 vs. NCBI nr
Match: XP_022970322.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima])

HSP 1 Score: 548.9 bits (1413), Expect = 3.4e-152
Identity = 293/363 (80.72%), Postives = 317/363 (87.33%), Query Frame = 0

Query: 15  NLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVN 74
           +LL  RNVLHYSY NS+ S+P GNPQ WL +A+  +RF HQSST +ISPD+EKV DEV+N
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAI--RRFGHQSSTNNISPDEEKVKDEVLN 67

Query: 75  QIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAA 134
           QI  TREN      ETFDVCIDKMCRSGNL AAA LLKS CDRKISLSS+KAYDMVLLAA
Sbjct: 68  QITATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAA 127

Query: 135 CESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNL 194
            E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMTFPN 
Sbjct: 128 SERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMTFPNF 187

Query: 195 IVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLHTFVS 254
           +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH FVS
Sbjct: 188 LVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVS 247

Query: 255 MKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGN 314
           MKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFGRSGN
Sbjct: 248 MKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGN 307

Query: 315 IEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFK 372
           +EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGPKDFK
Sbjct: 308 VEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFK 367

BLAST of Sed0007470 vs. NCBI nr
Match: KAG6583593.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 548.1 bits (1411), Expect = 5.8e-152
Identity = 294/367 (80.11%), Postives = 319/367 (86.92%), Query Frame = 0

Query: 11  CRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCD 70
           C++R LL  RNVLHYSY NS+ SVP GNPQ WL +A+  +RF HQ STT+ISPD+EKV D
Sbjct: 5   CKWR-LLSARNVLHYSYTNSITSVPVGNPQNWLLYAI--RRFGHQPSTTNISPDEEKVKD 64

Query: 71  EVVNQIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMV 130
           EV+NQI  TREN      ETFD+CIDKMCRS NL AAA LLKS CDRKISLSS+KAYDMV
Sbjct: 65  EVLNQITATRENASMCSHETFDICIDKMCRSNNLTAAAQLLKSLCDRKISLSSSKAYDMV 124

Query: 131 LLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMT 190
           LLAA E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMT
Sbjct: 125 LLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMT 184

Query: 191 FPNLIVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLH 250
           FPN +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH
Sbjct: 185 FPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILH 244

Query: 251 TFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFG 310
            FVSMKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFG
Sbjct: 245 MFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFG 304

Query: 311 RSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGP 370
           RSGN+EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGP
Sbjct: 305 RSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGP 364

Query: 371 KDFKRKK 372
           KDFKRK+
Sbjct: 365 KDFKRKR 367

BLAST of Sed0007470 vs. NCBI nr
Match: XP_023518970.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 545.0 bits (1403), Expect = 4.9e-151
Identity = 291/363 (80.17%), Postives = 316/363 (87.05%), Query Frame = 0

Query: 15  NLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVN 74
           +LL  RNVLHYSY NS+ S+P GNPQ WL +A+  +RF HQ STT+ISPD+EKV DEV+N
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAI--RRFGHQPSTTNISPDEEKVKDEVLN 67

Query: 75  QIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAA 134
           Q  +TREN      ETFDVCIDKMCRS NL AAA LLKS CDRKISLSS+KAYDMVLLAA
Sbjct: 68  QNTVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAA 127

Query: 135 CESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNL 194
            E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMTFPN 
Sbjct: 128 SERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMTFPNF 187

Query: 195 IVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLHTFVS 254
           +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH FVS
Sbjct: 188 LVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVS 247

Query: 255 MKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGN 314
           MKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFGRSGN
Sbjct: 248 MKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGN 307

Query: 315 IEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFK 372
           +EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGPKDFK
Sbjct: 308 VEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFK 367

BLAST of Sed0007470 vs. ExPASy Swiss-Prot
Match: Q5BIV3 (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX=3702 GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-55
Identity = 134/317 (42.27%), Postives = 202/317 (63.72%), Query Frame = 0

Query: 64  DDEKVCDEVVNQIIITRE--NRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKA 123
           D+E++  ++VN      +  ++  +   ++K  R GNL+ A  LL+S  ++ I L     
Sbjct: 49  DEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICL-PISV 108

Query: 124 YDMVLLAACESGDTALLCQVFKDCLV--SCKSLSSTSYMNFANAFTRSTDDINKLLEYVK 183
           +  +L AA E  D  L C+VF++ L+    + LSS  Y+N A AF  +TDD   L   +K
Sbjct: 109 FKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFI-NTDDCTYLTSLLK 168

Query: 184 EVIEMTFP-NLIVINRIILAFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAG 243
           E+ E + P  LIV+NRII AF++ R+ID  L I  +MK+  C+PD+ TYN +LD+LG AG
Sbjct: 169 EISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAG 228

Query: 244 RMDETLHTFVSMKED-GIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTY 303
            ++E L    +MKED  ++ +I++YNT+LN +RK  R DMCL+ + EMV   IEPDLL+Y
Sbjct: 229 LVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSY 288

Query: 304 TALIESFGRSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK- 363
           TA+I+S GRSGN++E+L L  EMK + +RPS Y++++L+    K G  + A+ L  E+K 
Sbjct: 289 TAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELKN 348

Query: 364 LNDLNLAGPKDFKRKKR 373
            + L+LAGP+DFKR  R
Sbjct: 349 TSSLDLAGPQDFKRHLR 363

BLAST of Sed0007470 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.8e-24
Identity = 77/279 (27.60%), Postives = 138/279 (49.46%), Query Frame = 0

Query: 80  RENRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLC 139
           R N  T+   I  +C  G  + A+ LL    +RKI+      +  ++ A  + G      
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAE 347

Query: 140 QVFKDCLVSCKSLSSTSYMNFANAFTR--STDDINKLLEYVKEVIEMTFPNLIVINRIIL 199
           +++ + +      S  +Y +  N F      D+  ++ E++  V +  FP+++  N +I 
Sbjct: 348 KLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIK 407

Query: 200 AFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAP 259
            F K + ++  +++F +M Q     +  TYNI++  L  AG  D     F  M  DG+ P
Sbjct: 408 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 467

Query: 260 DIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLL 319
           +I++YNTLL+ L K G+L+  ++ F  +   K+EP + TY  +IE   ++G +E+   L 
Sbjct: 468 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 527

Query: 320 REMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK 356
             + LK V+P    + +++S   + G  E A  L KEMK
Sbjct: 528 CNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

BLAST of Sed0007470 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-24
Identity = 77/282 (27.30%), Postives = 139/282 (49.29%), Query Frame = 0

Query: 80  RENRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLC 139
           R N  T++  I  +C  G  + A+ LL    +RKI+  +   +  ++ A  + G      
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSALIDAFVKEGKLVEAE 346

Query: 140 QVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEM-----TFPNLIVINR 199
           +++ + +         +Y +  N F      ++  L+  K + E+      FPN++  N 
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFC-----MHDRLDEAKHMFELMISKDCFPNVVTYNT 406

Query: 200 IILAFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDG 259
           +I  F K + ++  +++F +M Q     +  TYN ++  L  AG  D     F  M  DG
Sbjct: 407 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 466

Query: 260 IAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEAL 319
           + PDI++Y+ LL+ L K G+L+  L+ F  +   K+EPD+ TY  +IE   ++G +E+  
Sbjct: 467 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 526

Query: 320 TLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK 356
            L   + LK V+P+  I+ +++S   + G  E A  L +EMK
Sbjct: 527 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

BLAST of Sed0007470 vs. ExPASy Swiss-Prot
Match: Q9SZ52 (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR3 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-22
Identity = 77/273 (28.21%), Postives = 135/273 (49.45%), Query Frame = 0

Query: 85  TFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVL--LAACESGDTALLCQVF 144
           TF + +D +C++GN   A   L    D+ I L +   Y+ ++  L      D AL  ++F
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQGI-LPNLHTYNTLICGLLRVHRLDDAL--ELF 424

Query: 145 KDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNLIVINRIILAFSKC 204
            +        ++ +Y+ F + + +S D ++ L  + K   +   PN++  N  + + +K 
Sbjct: 425 GNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA 484

Query: 205 REIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSY 264
                A QIF  +K     PD  TYN+++      G +DE +     M E+G  PD++  
Sbjct: 485 GRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 544

Query: 265 NTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKL 324
           N+L+N+L K  R+D     F  M  MK++P ++TY  L+   G++G I+EA+ L   M  
Sbjct: 545 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ 604

Query: 325 KNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEM 355
           K   P++  F +L     K  +V LA+ +L +M
Sbjct: 605 KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

BLAST of Sed0007470 vs. ExPASy Swiss-Prot
Match: Q9ZU27 (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.6e-22
Identity = 62/206 (30.10%), Postives = 113/206 (54.85%), Query Frame = 0

Query: 156 SYMNFANAFTRSTDDINKLLEYVKEVIEM-TFPNLIVINRIILAFSKCREIDIALQIFDQ 215
           SYM+   +   +   I + +E + ++ E     + ++ N +  A  K ++I     +F++
Sbjct: 409 SYMSMLESLCGAGKTI-EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 468

Query: 216 MKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSYNTLLNSLRKVGR 275
           MK+    PD++TYNI++   G  G +DE ++ F  ++     PDI+SYN+L+N L K G 
Sbjct: 469 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 528

Query: 276 LDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKLKNVRPSSYIFKS 335
           +D   + F+EM    + PD++TY+ L+E FG++  +E A +L  EM +K  +P+   +  
Sbjct: 529 VDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNI 588

Query: 336 LVSNSMKIGKVELAMNLLKEMKLNDL 360
           L+    K G+   A++L  +MK   L
Sbjct: 589 LLDCLEKNGRTAEAVDLYSKMKQQGL 613

BLAST of Sed0007470 vs. ExPASy TrEMBL
Match: A0A6J1D2E8 (pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016680 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.6e-155
Identity = 295/373 (79.09%), Postives = 322/373 (86.33%), Query Frame = 0

Query: 6   SSGRSCRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDD 65
           SSG SCRFRNL  TR VLHY Y N +AS P G+PQIWLFFA M KRF HQS  TD SPD+
Sbjct: 31  SSGGSCRFRNLPSTRKVLHYPYTNCIASFPVGDPQIWLFFANMGKRFSHQSYPTDTSPDE 90

Query: 66  EKVCDEVVNQIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTK 125
           EKV DEV+NQI+ TR+N      ETFD CI KMCRSGNLAAAA LLKS CD KISLS++K
Sbjct: 91  EKVIDEVLNQIVATRDNASRSSHETFDACIYKMCRSGNLAAAAQLLKSLCDGKISLSASK 150

Query: 126 AYDMVLLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKE 185
           AYDMVLLAA E GDT+L CQVFKDCLVSCKSLSS +YMN A AF  ST+D+ KLLEYVKE
Sbjct: 151 AYDMVLLAASERGDTSLFCQVFKDCLVSCKSLSSATYMNLAKAFI-STNDVGKLLEYVKE 210

Query: 186 VIEMTFPNLIVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRM 245
           VIEMTFPNLIVIN+II AFSKCREI+ AL+IF+QMK  SC+PDLYTYNIILDMLG AGRM
Sbjct: 211 VIEMTFPNLIVINKIIFAFSKCREIEKALRIFNQMKLLSCKPDLYTYNIILDMLGRAGRM 270

Query: 246 DETLHTFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTAL 305
           DE LH FVSMKE GIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTA+
Sbjct: 271 DEILHMFVSMKEAGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTAM 330

Query: 306 IESFGRSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDL 365
           IESFGRSGNIEEAL LLREMKLKNV PS+YI+KSL+SNSMKIGKVELAM+LL E+KL+  
Sbjct: 331 IESFGRSGNIEEALGLLREMKLKNVYPSNYIYKSLISNSMKIGKVELAMSLLNELKLSGS 390

Query: 366 NLAGPKDFKRKKR 373
           NLA PKDFKR+KR
Sbjct: 391 NLANPKDFKRRKR 402

BLAST of Sed0007470 vs. ExPASy TrEMBL
Match: A0A6J1HKH0 (pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata OX=3662 GN=LOC111464935 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 9.6e-153
Identity = 295/367 (80.38%), Postives = 320/367 (87.19%), Query Frame = 0

Query: 11  CRFRNLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCD 70
           C++R LL  RNVLHYSY NS+ SVP GNPQ WL +A+  +RF HQ STT+ISPD+EKV D
Sbjct: 5   CKWR-LLSARNVLHYSYTNSITSVPVGNPQNWLLYAI--RRFGHQPSTTNISPDEEKVED 64

Query: 71  EVVNQIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMV 130
           EV+NQI  TREN      ETFD+CIDKMCRS NL AAA LLKSSCDRKISLSS+KAYDMV
Sbjct: 65  EVLNQITATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMV 124

Query: 131 LLAACESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMT 190
           LLAA E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMT
Sbjct: 125 LLAASERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMT 184

Query: 191 FPNLIVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLH 250
           FPN +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH
Sbjct: 185 FPNFLVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILH 244

Query: 251 TFVSMKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFG 310
            FVSMKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFG
Sbjct: 245 MFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFG 304

Query: 311 RSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGP 370
           RSGN+EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGP
Sbjct: 305 RSGNVEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGP 364

Query: 371 KDFKRKK 372
           KDFKRK+
Sbjct: 365 KDFKRKR 367

BLAST of Sed0007470 vs. ExPASy TrEMBL
Match: A0A6J1HYS7 (pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=3661 GN=LOC111469320 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.6e-152
Identity = 293/363 (80.72%), Postives = 317/363 (87.33%), Query Frame = 0

Query: 15  NLLYTRNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVN 74
           +LL  RNVLHYSY NS+ S+P GNPQ WL +A+  +RF HQSST +ISPD+EKV DEV+N
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAI--RRFGHQSSTNNISPDEEKVKDEVLN 67

Query: 75  QIIITREN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAA 134
           QI  TREN      ETFDVCIDKMCRSGNL AAA LLKS CDRKISLSS+KAYDMVLLAA
Sbjct: 68  QITATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAA 127

Query: 135 CESGDTALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNL 194
            E GDT LLCQVFKD LVS K LSSTSYMNFA AF R TDD +KLLEYVKE+IEMTFPN 
Sbjct: 128 SERGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFAR-TDDSSKLLEYVKEIIEMTFPNF 187

Query: 195 IVINRIILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLHTFVS 254
           +VINRII AFS+CREID ALQIF+QMK  S RPDLYTYNIILD LG AGRMDE LH FVS
Sbjct: 188 LVINRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVS 247

Query: 255 MKEDGIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGN 314
           MKEDGIAPDIVSYNTL+NSLRKVGRLDMCLIYFREMVAM+IEPDLLTYTALIESFGRSGN
Sbjct: 248 MKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGN 307

Query: 315 IEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFK 372
           +EEALTLLREMKLK++RPSSYI+KSL+SNSMKIGKVELAMNLLKEMKL+   LAGPKDFK
Sbjct: 308 VEEALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFK 367

BLAST of Sed0007470 vs. ExPASy TrEMBL
Match: A0A6J1D272 (pentatricopeptide repeat-containing protein At1g11900-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016680 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 3.1e-143
Identity = 274/342 (80.12%), Postives = 300/342 (87.72%), Query Frame = 0

Query: 37  GNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVNQIIITREN-----RETFDVCID 96
           G+PQIWLFFA M KRF HQS  TD SPD+EKV DEV+NQI+ TR+N      ETFD CI 
Sbjct: 20  GDPQIWLFFANMGKRFSHQSYPTDTSPDEEKVIDEVLNQIVATRDNASRSSHETFDACIY 79

Query: 97  KMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLCQVFKDCLVSCKS 156
           KMCRSGNLAAAA LLKS CD KISLS++KAYDMVLLAA E GDT+L CQVFKDCLVSCKS
Sbjct: 80  KMCRSGNLAAAAQLLKSLCDGKISLSASKAYDMVLLAASERGDTSLFCQVFKDCLVSCKS 139

Query: 157 LSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNLIVINRIILAFSKCREIDIALQI 216
           LSS +YMN A AF  ST+D+ KLLEYVKEVIEMTFPNLIVIN+II AFSKCREI+ AL+I
Sbjct: 140 LSSATYMNLAKAFI-STNDVGKLLEYVKEVIEMTFPNLIVINKIIFAFSKCREIEKALRI 199

Query: 217 FDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSYNTLLNSLRK 276
           F+QMK  SC+PDLYTYNIILDMLG AGRMDE LH FVSMKE GIAPDIVSYNTL+NSLRK
Sbjct: 200 FNQMKLLSCKPDLYTYNIILDMLGRAGRMDEILHMFVSMKEAGIAPDIVSYNTLINSLRK 259

Query: 277 VGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKLKNVRPSSYI 336
           VGRLDMCLIYFREMVAM+IEPDLLTYTA+IESFGRSGNIEEAL LLREMKLKNV PS+YI
Sbjct: 260 VGRLDMCLIYFREMVAMRIEPDLLTYTAMIESFGRSGNIEEALGLLREMKLKNVYPSNYI 319

Query: 337 FKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFKRKKR 373
           +KSL+SNSMKIGKVELAM+LL E+KL+  NLA PKDFKR+KR
Sbjct: 320 YKSLISNSMKIGKVELAMSLLNELKLSGSNLANPKDFKRRKR 360

BLAST of Sed0007470 vs. ExPASy TrEMBL
Match: A0A1S3CIJ8 (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 3.9e-130
Identity = 256/359 (71.31%), Postives = 297/359 (82.73%), Query Frame = 0

Query: 20  RNVLHYSYNNSVASVPAGNPQIWLFFALMSKRFDHQSSTTDISPDDEKVCDEVVNQIIIT 79
           RN+LHYSY N +AS+P GN QIW  +A+  K F HQSS+T+ISPD+ KV DEV+NQII  
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAI--KCFSHQSSSTNISPDEVKVGDEVLNQIIAP 69

Query: 80  REN-----RETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGD 139
           REN      E  D CIDK+C  G+LAAAA LLKS C+ KISL+S+KAYDMVLLAA E GD
Sbjct: 70  RENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGD 129

Query: 140 TALLCQVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNLIVINR 199
           T LLCQVFK  +VSCKSLSS SYM+FA AFT+ T+D +KLLE VKE++E+T  N  VINR
Sbjct: 130 TPLLCQVFKVAVVSCKSLSSASYMSFARAFTK-TNDSSKLLECVKEIVEVTSQNCSVINR 189

Query: 200 IILAFSKCREIDIALQIFDQMK-QSCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDG 259
           II AFSKCREID A QIF+QMK  SC PDLYTYNI+LDMLG AGR++E LH FVSMK++G
Sbjct: 190 IIFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFVSMKDEG 249

Query: 260 IAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEAL 319
           IAPDIVSYNTL+NSLRKVGRLD+ LIYFREMVAM I+PDLLTYTALIESFGR GNIEEAL
Sbjct: 250 IAPDIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPDLLTYTALIESFGRFGNIEEAL 309

Query: 320 TLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMKLNDLNLAGPKDFKRKKR 373
           TLL+EMKLK + PSSYI+KSL++NS K+GKVELA NLL EMKL++  LA P+DFKR+KR
Sbjct: 310 TLLKEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLNEMKLSESKLARPEDFKRRKR 365

BLAST of Sed0007470 vs. TAIR 10
Match: AT1G11900.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-56
Identity = 134/317 (42.27%), Postives = 202/317 (63.72%), Query Frame = 0

Query: 64  DDEKVCDEVVNQIIITRE--NRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKA 123
           D+E++  ++VN      +  ++  +   ++K  R GNL+ A  LL+S  ++ I L     
Sbjct: 49  DEEELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICL-PISV 108

Query: 124 YDMVLLAACESGDTALLCQVFKDCLV--SCKSLSSTSYMNFANAFTRSTDDINKLLEYVK 183
           +  +L AA E  D  L C+VF++ L+    + LSS  Y+N A AF  +TDD   L   +K
Sbjct: 109 FKNLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFI-NTDDCTYLTSLLK 168

Query: 184 EVIEMTFP-NLIVINRIILAFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAG 243
           E+ E + P  LIV+NRII AF++ R+ID  L I  +MK+  C+PD+ TYN +LD+LG AG
Sbjct: 169 EISESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAG 228

Query: 244 RMDETLHTFVSMKED-GIAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTY 303
            ++E L    +MKED  ++ +I++YNT+LN +RK  R DMCL+ + EMV   IEPDLL+Y
Sbjct: 229 LVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSY 288

Query: 304 TALIESFGRSGNIEEALTLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK- 363
           TA+I+S GRSGN++E+L L  EMK + +RPS Y++++L+    K G  + A+ L  E+K 
Sbjct: 289 TAVIDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELKN 348

Query: 364 LNDLNLAGPKDFKRKKR 373
            + L+LAGP+DFKR  R
Sbjct: 349 TSSLDLAGPQDFKRHLR 363

BLAST of Sed0007470 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25
Identity = 77/279 (27.60%), Postives = 138/279 (49.46%), Query Frame = 0

Query: 80  RENRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLC 139
           R N  T+   I  +C  G  + A+ LL    +RKI+      +  ++ A  + G      
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAE 347

Query: 140 QVFKDCLVSCKSLSSTSYMNFANAFTR--STDDINKLLEYVKEVIEMTFPNLIVINRIIL 199
           +++ + +      S  +Y +  N F      D+  ++ E++  V +  FP+++  N +I 
Sbjct: 348 KLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIK 407

Query: 200 AFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAP 259
            F K + ++  +++F +M Q     +  TYNI++  L  AG  D     F  M  DG+ P
Sbjct: 408 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 467

Query: 260 DIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLL 319
           +I++YNTLL+ L K G+L+  ++ F  +   K+EP + TY  +IE   ++G +E+   L 
Sbjct: 468 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 527

Query: 320 REMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK 356
             + LK V+P    + +++S   + G  E A  L KEMK
Sbjct: 528 CNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

BLAST of Sed0007470 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-25
Identity = 77/282 (27.30%), Postives = 139/282 (49.29%), Query Frame = 0

Query: 80  RENRETFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVLLAACESGDTALLC 139
           R N  T++  I  +C  G  + A+ LL    +RKI+  +   +  ++ A  + G      
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSALIDAFVKEGKLVEAE 346

Query: 140 QVFKDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEM-----TFPNLIVINR 199
           +++ + +         +Y +  N F      ++  L+  K + E+      FPN++  N 
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFC-----MHDRLDEAKHMFELMISKDCFPNVVTYNT 406

Query: 200 IILAFSKCREIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDG 259
           +I  F K + ++  +++F +M Q     +  TYN ++  L  AG  D     F  M  DG
Sbjct: 407 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 466

Query: 260 IAPDIVSYNTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEAL 319
           + PDI++Y+ LL+ L K G+L+  L+ F  +   K+EPD+ TY  +IE   ++G +E+  
Sbjct: 467 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 526

Query: 320 TLLREMKLKNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEMK 356
            L   + LK V+P+  I+ +++S   + G  E A  L +EMK
Sbjct: 527 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

BLAST of Sed0007470 vs. TAIR 10
Match: AT4G31850.1 (proton gradient regulation 3 )

HSP 1 Score: 106.7 bits (265), Expect = 4.1e-23
Identity = 77/273 (28.21%), Postives = 135/273 (49.45%), Query Frame = 0

Query: 85  TFDVCIDKMCRSGNLAAAALLLKSSCDRKISLSSTKAYDMVL--LAACESGDTALLCQVF 144
           TF + +D +C++GN   A   L    D+ I L +   Y+ ++  L      D AL  ++F
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQGI-LPNLHTYNTLICGLLRVHRLDDAL--ELF 424

Query: 145 KDCLVSCKSLSSTSYMNFANAFTRSTDDINKLLEYVKEVIEMTFPNLIVINRIILAFSKC 204
            +        ++ +Y+ F + + +S D ++ L  + K   +   PN++  N  + + +K 
Sbjct: 425 GNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA 484

Query: 205 REIDIALQIFDQMKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSY 264
                A QIF  +K     PD  TYN+++      G +DE +     M E+G  PD++  
Sbjct: 485 GRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 544

Query: 265 NTLLNSLRKVGRLDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKL 324
           N+L+N+L K  R+D     F  M  MK++P ++TY  L+   G++G I+EA+ L   M  
Sbjct: 545 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ 604

Query: 325 KNVRPSSYIFKSLVSNSMKIGKVELAMNLLKEM 355
           K   P++  F +L     K  +V LA+ +L +M
Sbjct: 605 KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

BLAST of Sed0007470 vs. TAIR 10
Match: AT1G51965.1 (ABA Overly-Sensitive 5 )

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-23
Identity = 62/206 (30.10%), Postives = 113/206 (54.85%), Query Frame = 0

Query: 156 SYMNFANAFTRSTDDINKLLEYVKEVIEM-TFPNLIVINRIILAFSKCREIDIALQIFDQ 215
           SYM+   +   +   I + +E + ++ E     + ++ N +  A  K ++I     +F++
Sbjct: 409 SYMSMLESLCGAGKTI-EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 468

Query: 216 MKQ-SCRPDLYTYNIILDMLGCAGRMDETLHTFVSMKEDGIAPDIVSYNTLLNSLRKVGR 275
           MK+    PD++TYNI++   G  G +DE ++ F  ++     PDI+SYN+L+N L K G 
Sbjct: 469 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 528

Query: 276 LDMCLIYFREMVAMKIEPDLLTYTALIESFGRSGNIEEALTLLREMKLKNVRPSSYIFKS 335
           +D   + F+EM    + PD++TY+ L+E FG++  +E A +L  EM +K  +P+   +  
Sbjct: 529 VDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNI 588

Query: 336 LVSNSMKIGKVELAMNLLKEMKLNDL 360
           L+    K G+   A++L  +MK   L
Sbjct: 589 LLDCLEKNGRTAEAVDLYSKMKQQGL 613

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147838.13.3e-15579.09pentatricopeptide repeat-containing protein At1g11900-like isoform X1 [Momordica... [more]
XP_022964991.12.0e-15280.38pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata][more]
XP_022970322.13.4e-15280.72pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima][more]
KAG6583593.15.8e-15280.11Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023518970.14.9e-15180.17pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pep... [more]
Match NameE-valueIdentityDescription
Q5BIV31.8e-5542.27Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX... [more]
Q9SXD12.8e-2427.60Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop... [more]
Q9LQ146.2e-2427.30Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop... [more]
Q9SZ525.8e-2228.21Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop... [more]
Q9ZU277.6e-2230.10Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1D2E81.6e-15579.09pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordi... [more]
A0A6J1HKH09.6e-15380.38pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata... [more]
A0A6J1HYS71.6e-15280.72pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=366... [more]
A0A6J1D2723.1e-14380.12pentatricopeptide repeat-containing protein At1g11900-like isoform X2 OS=Momordi... [more]
A0A1S3CIJ83.9e-13071.31pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo... [more]
Match NameE-valueIdentityDescription
AT1G11900.11.3e-5642.27Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G62670.12.0e-2527.60rna processing factor 2 [more]
AT1G62930.14.4e-2527.30Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G31850.14.1e-2328.21proton gradient regulation 3 [more]
AT1G51965.15.4e-2330.10ABA Overly-Sensitive 5 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 200..353
e-value: 7.2E-12
score: 45.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 145..273
e-value: 2.5E-25
score: 90.9
coord: 274..362
e-value: 5.9E-19
score: 70.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 295..327
e-value: 1.6E-8
score: 32.2
coord: 224..258
e-value: 5.3E-8
score: 30.6
coord: 259..292
e-value: 1.4E-6
score: 26.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 12.74805
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 222..256
score: 11.443655
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 11.092894
NoneNo IPR availablePANTHERPTHR47942:SF17OS05G0481800 PROTEINcoord: 16..372
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 16..372

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007470.1Sed0007470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding