Sed0007466 (gene) Chayote v1

Overview


Name	Sed0007466
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase sigma factor sigA
Location	LG01: 3002733 .. 3007320 (-)
RNA-Seq Expression	Sed0007466
Synteny	Sed0007466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGCTTCCCATATCTCCAATGCTCAAACATTTTCCTCTCAATTTTTCCCATTATCTTTCATTTTTCTAACATTCTTGCATTCCCATTTTCTCTAAATTTCTTTCAATTAAATTTTGAATTAACCCCACCACAATTTTGCATCAAATTCCCTAAAAAATCATAGATATTCACAAACCCAATAACGACATCAATCCATTCTGCCATTGTCTTCCATTGTATTCACCGCCATTTCTCCATTTCGGGTACTTTTTTCAAGGCTTGCTTCCATTTTTCATTCACTGATTAGTTGTTGGTTTCTGCAATTTTTTACTCGATTTCTGTTTCTGGGTTCTGCAATTTTTCTTGTTTTCACGTTTCATTCAGTCATTGAGTTGTTGTAACTGTTAACTAAGATTTGGGTTCGAAAATTGTTGTGGAATTCAATCTGAACCTCGTTTTTATCGACTGATTTTGTTCTGTTTCTTCTACGTTTGCCATGAGCTTCGAGATGTTCTTGTTTTTTTTTTACGATTCAAACAGCATTTGAGGATTAGAGATTCAAATTTGTAACCTCATAGTTATTAAGTTATATAAGATCTTGTTAGAGCTCTGCTCTTGTTAGCGTGTTGAGATGTTCTTATTGAGTTTGTTTTCTTCGATTTTTGGTTGATTTCAGGTGGGAATTTAATACCCTTTTTACTCTATTTGATGAATCTAGGGCTGTTTGTGGTTCTGGGGAAATAATTTTGAGGTTACTATTTGAAGTAACTGATCCATTTTGCTGGTGAAGGGAATAGATTTGAAGTTTGATTTGGTGTAATTGGTTTTGTGTTGAACCTGTGATGATAAGACTTTTGTGCACAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCTATAATTGGGCTTGGTGCAGCAAAGAGGCTATTGAATTCTTCATCCTATTATTCTGATTTCCCAGAAAAGGTTTTATATGTTAGTGACCACAGGTTGGGACAAAGCCAAGTTTCTCCTACAAAGAGTGTGGTAATAGCGAAAAGTTCGGCTAACTTTTCTCCGAGCTATCCGTCGTCGAATCGGCACACACAATGCATTAAAGCTGTGAAGGAACTTGTAGATACTCCCTCTTCTCCCACTGCAGAGCCATGGCTTCATAGCACCAGCATCTCGGAAGATGACGAAATTGATCTCAAATGTACTGTGGATGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACCGTGTCGACTGATGGTAACACGAAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGATTGAGCTCTAAGAGGAAAATACAGAGCAAACATGTTTTGATGACCCAACCAAAAATCAGTAAACAGCTAAAACCTACTATCAGTCCTGAGCTACTTCAAAATCGCTCGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGTTACTTTCCCATGCCGAAGTTGTACGCCTTTCAATGAAAATTAAAGTTGGTCTTGCATTGGAGGAGCGTAAAACCAGGTTACCACAGGCTTCTCTTGTTCAGTTTATCATCAATTACATGTTATGATTTACATTTACAATTGAGTAGTACTTAGTAGTAGATAGTTTCATTTAATAACCTGACAGTGTGAGAAAGGAAACTATCTCAAGTTTATGCAATTCTATCATACCATTGCCAAAACTGCTGCTGAAGTAATGATATCATAACCTTCAAATTGTATTTTTTTTTTTCCTCCCTAACTTCTGTAATGACTCCCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGATCAACTGGCAATATCCCTTAAGATTTCCCGCGCCGAGTTACGGTCAAGAGTAATGGAGTGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTCTCGTAATGTCTATTGCACAAAGATACGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGTGAAGAGCTTATGAAAGTCCATACAGCTAAGTCTAAGCCTTATTAGCTTGCTACTTGTATAAAAAGTTTGTTTATGTTTAATGTAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACGTATGTTTATTGGTGGATACGACAGGTGAGGATATAAATTTTACCATTGTTGTATACAAAAGACAACCTTCTCCGGTAAAAGAAACAAAACAAGCCTACTTTATATCATAGAACATTTGGAGGGGAAAATGAATAAGAAACGACGTTATGAAACAACTCGTTTGCCTAAAATAAAGGGAGAGATGAAGGTGTAGAATACATGTTATCTTTAAGATTTGAACTTAGCTTTCAAACATTTGATCTTTTGTCAAGTTTAATGTTTTTCTTTGCGCATATGAGACGAATTTGTAATTATTTGTTAGGTCATCTTTTGCTAGATTGGAACCCTTCCTTTATAGTGCTCTCTTTTGTGGGTTTGAATTGTTTTTTTTTTTTTTTTTTTTTTTTGTATGTCCTTGTTGTTTTCCCCTTGTCTATGAAAGTTAGTTGTTTGTCACCAAAAACAAAACCTTCAAGTTAAAGTTGGTTTCTAAGAGATTCCTAGTAAAGTTGGCTAGTTGACCTAATGGAATGATTATGCGGCAGTTAGCAACTAAATTCAAACTTCACGAATGAATTCAAAATCTAATTCAGGAATAATAGAACCAATTCAAATTCTAAGAAGCAAAAGTGTTTTGAAAAGAAAACTGGATATTTGAGTTCAAATTATCTAATGGAAGCACCTTGTGTTGAAGCAAGCACTGACAGAACTTCATGTGTTGTTCCATGCGCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACTCTGAGATTACCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATTACTCCATCACTTGATGTAAGTAAATATTTGCAGTCATATTAATGTGACATATTGTTAAGCTTAATGTTTGACGTTTCAAACAAGCAAGTTCAACTACAAATTAAGATGAACTTTGTGATTACTTTAACATTCTTCATCTATCTCAGAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGTATTTTAAATTTCTAATAACCAATTCACTCTGCTTTTTCCTAATGAGTATCTCGGTTCGTTTTCCTCATTGAGCCTACCTCTCGTCTCTTTCAGGCAATCAGCAAGGTGTTCTCACTTGACCGAGAAGCATTCCCGTCATTAAATGGTCTTCCTGGCGAAACTCATCATAGTGTAAGCCTTGATTAGCAACTCTGTTTCTGCAACCTTCACGTGATTTTCAGAACTTCATTTCGGACTTCTCGACTCTTCTGTTGACATTTTGTTTCTTCAGTATATTGCAGATAACCGCCTTGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGTAAAATGATAGGTCAACTGTCAAGTCTGAGCATAAAAAACTATACCATTTTCATCGGTATAAGATGAGAAGAAAAACAACCTGTTTATTTGCTTAACTAGATGAGATGAAAAACTATACTAAATTATGTTAAACCATTGATCAATCCAAAAAGCTTAAGCTGGTAAATATAGATAAATTTAATTATATCAACCAATAGATACCATGCCAATCTTTTTATTTATTTATAGATGTTATCATCCTACCCTCTTTCGTAATTATAGTTACACCTCTCTCCTAGCTAATTGGAAGGGTCTCTAGTAATCCTTCTTTCATTGGATCTTTCGACCCAACCCCTTCTTATTGTAACTTCTGTTTAATTTCCTACATCAATGAATCGAAAATATTGGCAGGCTGAGGTTAACGAACTCATAAACATGACACTTGGGGACCGAGAAAGAGAGATCATACGTCTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAACGGTTAGTGAAAAGAACTTACCCGAGCAAAATGCTAATGTTGTTGTAAGTTTGCTAACAAAATGAAGTGTTTGGTGTGAGTTTTTCAGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAGTTGGACTGGTGGCATTGGAGAAGCTAAAGAAGGCAGCCAAGACGGGGAAGATGGAAGCCATGTTGCTTAAACATTAATTTGTTAAAGACGTATAGTTACAAATCATACATTGTAGAGACTGTCTATTCTCTACTGTATATATACAGAAAGCGATACTGTATTATTTCGCCAATTGTGATTTTGATCAGAAATAGCGATAACATATAATAGGGAATGTTTCTGGAATGAGGTTTAAATCCGTTGGCTGAGAAAGTTATTGTTGATAGGTGTTGAATACAAGTCACCCTCTGCTTAATGTGAATCAATTTTTTTATGATATCTGTTATAAGACTAGTTGTCCTTGATATCTATGTTTTCCCAATAGAGTTGTGAAATTCTAATAACACCATTAGCCCCACAGAACCACACCTCTTCTTTTTTCTTTTTTATAATTTGTGACTGTATGAACCAAGTTTATACTAATCTT

mRNA sequence

CTCAGCTTCCCATATCTCCAATGCTCAAACATTTTCCTCTCAATTTTTCCCATTATCTTTCATTTTTCTAACATTCTTGCATTCCCATTTTCTCTAAATTTCTTTCAATTAAATTTTGAATTAACCCCACCACAATTTTGCATCAAATTCCCTAAAAAATCATAGATATTCACAAACCCAATAACGACATCAATCCATTCTGCCATTGTCTTCCATTGTATTCACCGCCATTTCTCCATTTCGGGGCTGTTTGTGGTTCTGGGGAAATAATTTTGAGGTTACTATTTGAAGTAACTGATCCATTTTGCTGGTGAAGGGAATAGATTTGAAGTTTGATTTGGTGTAATTGGTTTTGTGTTGAACCTGTGATGATAAGACTTTTGTGCACAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCTATAATTGGGCTTGGTGCAGCAAAGAGGCTATTGAATTCTTCATCCTATTATTCTGATTTCCCAGAAAAGGTTTTATATGTTAGTGACCACAGGTTGGGACAAAGCCAAGTTTCTCCTACAAAGAGTGTGGTAATAGCGAAAAGTTCGGCTAACTTTTCTCCGAGCTATCCGTCGTCGAATCGGCACACACAATGCATTAAAGCTGTGAAGGAACTTGTAGATACTCCCTCTTCTCCCACTGCAGAGCCATGGCTTCATAGCACCAGCATCTCGGAAGATGACGAAATTGATCTCAAATGTACTGTGGATGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACCGTGTCGACTGATGGTAACACGAAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGATTGAGCTCTAAGAGGAAAATACAGAGCAAACATGTTTTGATGACCCAACCAAAAATCAGTAAACAGCTAAAACCTACTATCAGTCCTGAGCTACTTCAAAATCGCTCGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGTTACTTTCCCATGCCGAAGTTGTACGCCTTTCAATGAAAATTAAAGTTGGTCTTGCATTGGAGGAGCGTAAAACCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGATCAACTGGCAATATCCCTTAAGATTTCCCGCGCCGAGTTACGGTCAAGAGTAATGGAGTGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTCTCGTAATGTCTATTGCACAAAGATACGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACGTATGTTTATTGGTGGATACGACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACTCTGAGATTACCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATTACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGCAATCAGCAAGGTGTTCTCACTTGACCGAGAAGCATTCCCGTCATTAAATGGTCTTCCTGGCGAAACTCATCATAGTTATATTGCAGATAACCGCCTTGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACGAACTCATAAACATGACACTTGGGGACCGAGAAAGAGAGATCATACGTCTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAGTTGGACTGGTGGCATTGGAGAAGCTAAAGAAGGCAGCCAAGACGGGGAAGATGGAAGCCATGTTGCTTAAACATTAATTTGTTAAAGACGTATAGTTACAAATCATACATTGTAGAGACTGTCTATTCTCTACTGTATATATACAGAAAGCGATACTGTATTATTTCGCCAATTGTGATTTTGATCAGAAATAGCGATAACATATAATAGGGAATGTTTCTGGAATGAGGTTTAAATCCGTTGGCTGAGAAAGTTATTGTTGATAGGTGTTGAATACAAGTCACCCTCTGCTTAATGTGAATCAATTTTTTTATGATATCTGTTATAAGACTAGTTGTCCTTGATATCTATGTTTTCCCAATAGAGTTGTGAAATTCTAATAACACCATTAGCCCCACAGAACCACACCTCTTCTTTTTTCTTTTTTATAATTTGTGACTGTATGAACCAAGTTTATACTAATCTT

Coding sequence (CDS)

ATGATGGCAACAGCTGCTATAATTGGGCTTGGTGCAGCAAAGAGGCTATTGAATTCTTCATCCTATTATTCTGATTTCCCAGAAAAGGTTTTATATGTTAGTGACCACAGGTTGGGACAAAGCCAAGTTTCTCCTACAAAGAGTGTGGTAATAGCGAAAAGTTCGGCTAACTTTTCTCCGAGCTATCCGTCGTCGAATCGGCACACACAATGCATTAAAGCTGTGAAGGAACTTGTAGATACTCCCTCTTCTCCCACTGCAGAGCCATGGCTTCATAGCACCAGCATCTCGGAAGATGACGAAATTGATCTCAAATGTACTGTGGATGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACCGTGTCGACTGATGGTAACACGAAGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGATTGAGCTCTAAGAGGAAAATACAGAGCAAACATGTTTTGATGACCCAACCAAAAATCAGTAAACAGCTAAAACCTACTATCAGTCCTGAGCTACTTCAAAATCGCTCGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGTTACTTTCCCATGCCGAAGTTGTACGCCTTTCAATGAAAATTAAAGTTGGTCTTGCATTGGAGGAGCGTAAAACCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGATCAACTGGCAATATCCCTTAAGATTTCCCGCGCCGAGTTACGGTCAAGAGTAATGGAGTGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTCTCGTAATGTCTATTGCACAAAGATACGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACGTATGTTTATTGGTGGATACGACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACTCTGAGATTACCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATTACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAACGCCACAGAGGCAATCAGCAAGGTGTTCTCACTTGACCGAGAAGCATTCCCGTCATTAAATGGTCTTCCTGGCGAAACTCATCATAGTTATATTGCAGATAACCGCCTTGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACGAACTCATAAACATGACACTTGGGGACCGAGAAAGAGAGATCATACGTCTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGACAAGTTGGACTGGTGGCATTGGAGAAGCTAAAGAAGGCAGCCAAGACGGGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Protein sequence

MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSPSYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLEKQWNLSFEQTVSTDGNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQLKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTGKMEAMLLKH

Homology

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BLAST of Sed0007466 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 917.5 bits (2370), Expect = 4.9e-263
Identity = 482/509 (94.70%), Postives = 495/509 (97.25%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYV-SDHRLGQSQVSPTKSVVIAKSSANFS 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EK+LYV +DHRLGQ+QVSPTKSVVIAKSSANFS
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFS 60

Query: 61  PSYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSML 120
           PSYPSSNRH+QCIKAVKE VDTPSSPTAEPWLH+T+I ED+EIDLKCTV+ALLLLQKSML
Sbjct: 61  PSYPSSNRHSQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQ 180
           EKQWNLSFEQTVSTD   G T+KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEP 240
           L+PTISPELLQNR KGYVKGL+SEELLSHAEVVRLS KIKVGLALEERKTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RVRQVGLVALEKLKKAAKT KMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509

[Close]

BLAST of Sed0007466 vs. NCBI nr
Match: XP_022148631.1 (RNA polymerase sigma factor sigA [Momordica charantia] >XP_022148632.1 RNA polymerase sigma factor sigA [Momordica charantia])

HSP 1 Score: 897.9 bits (2319), Expect = 4.0e-257
Identity = 470/508 (92.52%), Postives = 487/508 (95.87%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFPEK+LY +DHRLGQSQVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           S+PSSNRHTQCIKAVKE VDTPSSPT EPWL +++  ED+EIDLKCTV+ALLLLQKSMLE
Sbjct: 61  SFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTV TD   G T+KKVPVTCSGVSARQRR+SSKRKIQSK+  M QPKISKQL
Sbjct: 121 KQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQL 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           + TISPELLQ R KGYVKGLVSEELLSHAEVVRLS KIKVGLALEERKTRLKERLGCEPS
Sbjct: 181 RSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           EDQLAISLKISR ELRSRV+ECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNX 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LEN+PWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAKT KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. NCBI nr
Match: XP_016902935.1 (PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa] >TYK00943.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa])

HSP 1 Score: 893.3 bits (2307), Expect = 9.9e-256
Identity = 470/509 (92.34%), Postives = 487/509 (95.68%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDF EK+LY +D+RLGQ+QVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHT-QCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSML 120
           SYP SNRH+ QCIKAVKE V+TPSSPTAEPWL +T+I ED+E DLKCTV+ALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQ 180
           EKQWNLSFEQTVSTD     T KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEP 240
           L+PTISPELLQNR KGYVKGL+SEELLSHAEVVRLS KIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RVRQVGLVALEKLKKAAKT KMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Sed0007466 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 890.2 bits (2299), Expect = 8.4e-255
Identity = 465/508 (91.54%), Postives = 485/508 (95.47%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EKVLY++DHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           SYP SNRH QCIKAVKE VDTPSSPTAEPWLH+T+I ED+E DLKCTV+ALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTVSTD   G T+KKVPVTCSGVSARQRR+SSKRKIQSKHV + QPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQL 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           KP+ISPELLQNR +GYVKGLVSEE+L H+EVVRLS KIKVGLALEE KTRLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTWILK EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAK  KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 889.4 bits (2297), Expect = 1.4e-254
Identity = 465/508 (91.54%), Postives = 484/508 (95.28%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EKVLY++DHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           SYP SNRH QCIKAVKE VDTPSSPTAEPWLH+T+I ED+E DLKCTV+ALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTVSTD   G T+KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           KP+ISPELLQNR +GYVKGLVSEE+L H+EVVRLS KIKVGLALEE KTRLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTW LK EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAK  KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 3.4e-190
Identity = 357/516 (69.19%), Postives = 422/516 (81.78%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD  EK L V+DH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISE------DDEIDLKCTVDALLLLQ 121
           +PSSNRHTQ  KA+KE VD  S  T +PWL + +  E      DD+  +  +V+A+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTD-----GNTKKKVPV-TCSGVSARQRRLSSKRKIQSKHVLMT 181
           KSMLEK WNLSFE+ VS++        KKK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLK 241
                      +S      + +GYVKG++SE++LSH EVVRLS KIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISK 481
           HSYIAD RLENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 482 RIGLSRERVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RIGLSRERVRQVGLVALEKLK AA+  KMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 469.5 bits (1207), Expect = 4.6e-131
Identity = 274/531 (51.60%), Postives = 358/531 (67.42%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSD-FPEKV-LYVSDHRLG---------QSQVSPT--- 60
           M AT A+IGL A  RLL++S   +D  P+KV L V     G          S   P    
Sbjct: 1   MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT 60

Query: 61  -KSVVIAKSSANFSPS-----YPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDD 120
            K   +A      SP        +   H+    A+      P  PT  P   +       
Sbjct: 61  PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAH--- 120

Query: 121 EIDLKCTVDALLLLQKSMLEKQWNLSFEQ---------TVSTDGNTKKKVPVTCSGVSAR 180
             DL+ +++A++LLQ+SMLEKQW L F+              D  +K  V V  S VSAR
Sbjct: 121 --DLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSAR 180

Query: 181 QRRLSSKRKIQSKHVLMTQPKISKQLKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRL 240
           QRR+S +R+ ++K         +      +SPEL+Q+R++ Y++G VS+ELL+H +VV L
Sbjct: 181 QRRMSGRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHL 240

Query: 241 SMKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNV 300
           S KIK G+ L++++++LKE+LG EPS  QLA SLKIS  ELRSR+ E  LARE L MSN+
Sbjct: 241 SHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNL 300

Query: 301 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 360
           RLV+SIAQ+YDN+G E+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL 
Sbjct: 301 RLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALA 360

Query: 361 ENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVF 420
           ENS+T RLPT+LHERL  IR AK  L+++GI P+++ IA SLN+S+KKV NATEA++KV 
Sbjct: 361 ENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVL 420

Query: 421 SLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREII 480
           SLD++AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVN+L+N TL +RER+II
Sbjct: 421 SLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDII 480

Query: 481 RLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTGKMEAML 503
           RLYHG+  +C TWE+IS++ GLSRERVRQVGL+A+EKLK AA+   +EA+L
Sbjct: 481 RLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 1.9e-39
Identity = 112/307 (36.48%), Postives = 167/307 (54.40%), Query Frame = 0


Query: 193 YVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAEL 252
           Y++ +    LL   E + L+ +I   LALE  +  L E+L   PS+ + A ++     E 
Sbjct: 94  YLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEF 153

Query: 253 RSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 312
           R R+     A++K+  SN+RLV+SIA++Y N G    DL+Q G +GL+R  EKFD  KG+
Sbjct: 154 RRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 213

Query: 313 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI-RNAKVRLQEKGITPSLDRIAE 372
           K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  I +  K+  QE G  P+ + IA 
Sbjct: 214 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 273

Query: 373 SLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL---PGETHHSYIADNRLENNPWH 432
            + M+ +K+    K+A   IS    + +E    L       GET    +A N L      
Sbjct: 274 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLR----- 333

Query: 433 GTDTWILKAEVNELINMTLGDREREIIRLYHGLDN-ECLTWEEISKRIGLSRERVRQVGL 491
                    E  E +  TL  RER+++RL +GLD+    T EEI +   ++RER+RQ+  
Sbjct: 334 ---------EDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEA 386

[Close]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-39
Identity = 107/307 (34.85%), Postives = 173/307 (56.35%), Query Frame = 0


Query: 193 YVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAEL 252
           Y++ +    LL   E + L+ KI   L LE  + RL E+L  +P + + A ++++     
Sbjct: 85  YLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAF 144

Query: 253 RSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 312
           R R+     A++K+  SN+RLV+SIA++Y N G    DL+Q G +GL+R  EKFD  KG+
Sbjct: 145 RYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 204

Query: 313 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI-RNAKVRLQEKGITPSLDRIAE 372
           K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  I +  K+  QE G  P+ + IA 
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAT 264

Query: 373 SLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL---PGETHHSYIADNRLENNPWH 432
            + M+ +K+    K+A   IS    + +E    L       GET    ++ N        
Sbjct: 265 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVSKN-------- 324

Query: 433 GTDTWILKAEVNELINMTLGDREREIIRLYHGLDN-ECLTWEEISKRIGLSRERVRQVGL 491
                +L+ ++ ++++ +L  RER+++RL +GLD+    T EEI +   ++RER+RQ+  
Sbjct: 325 -----LLREDLEKVLD-SLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 377

[Close]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 4.2e-39
Identity = 116/336 (34.52%), Postives = 187/336 (55.65%), Query Frame = 0


Query: 174 SKQLKPTISPELLQNRSKGYVKGLV-SEELLSHAEVVRLSMKIKVGLALEERKTRLKERL 233
           S + K  ++ E+  N    Y++    S +LL+  E   LS  I+  L LE  +T L ER 
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERS 302

Query: 234 GCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 293
           G +P+  Q A +  + +  LR R+   +L ++K+  SN+RLV+SIA+ Y   G  + DLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362

Query: 294 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 353
           Q G  GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E    ++ 
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422

Query: 354 AKVRL-QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHS 413
           A+ +L  E G  P  + IAE+  +S K++     +     SLD++   + N  P E    
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV--- 482

Query: 414 YIADNRLENNPWHGTDTWI---LKAEVNELINMTLGDREREIIRLYHGL-DNECLTWEEI 473
            IAD     +     D  I   ++ +++++++ +LG RE+++IR   G+ D    T +EI
Sbjct: 483 -IADPEAVTS----EDILIKEFMRQDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEI 542

Query: 474 SKRIGLSRERVRQVGLVALEKLKKAAKTGKMEAMLL 504
            + +G+SRERVRQ+   A  KLK   +   ++  L+
Sbjct: 543 GEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Sed0007466 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 897.9 bits (2319), Expect = 1.9e-257
Identity = 470/508 (92.52%), Postives = 487/508 (95.87%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFPEK+LY +DHRLGQSQVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           S+PSSNRHTQCIKAVKE VDTPSSPT EPWL +++  ED+EIDLKCTV+ALLLLQKSMLE
Sbjct: 61  SFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTV TD   G T+KKVPVTCSGVSARQRR+SSKRKIQSK+  M QPKISKQL
Sbjct: 121 KQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQL 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           + TISPELLQ R KGYVKGLVSEELLSHAEVVRLS KIKVGLALEERKTRLKERLGCEPS
Sbjct: 181 RSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           EDQLAISLKISR ELRSRV+ECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNX 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LEN+PWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAKT KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 893.3 bits (2307), Expect = 4.8e-256
Identity = 470/509 (92.34%), Postives = 487/509 (95.68%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDF EK+LY +D+RLGQ+QVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHT-QCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSML 120
           SYP SNRH+ QCIKAVKE V+TPSSPTAEPWL +T+I ED+E DLKCTV+ALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQ 180
           EKQWNLSFEQTVSTD     T KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEP 240
           L+PTISPELLQNR KGYVKGL+SEELLSHAEVVRLS KIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RVRQVGLVALEKLKKAAKT KMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Sed0007466 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 893.3 bits (2307), Expect = 4.8e-256
Identity = 470/509 (92.34%), Postives = 487/509 (95.68%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDF EK+LY +D+RLGQ+QVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHT-QCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSML 120
           SYP SNRH+ QCIKAVKE V+TPSSPTAEPWL +T+I ED+E DLKCTV+ALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQ 180
           EKQWNLSFEQTVSTD     T KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEP 240
           L+PTISPELLQNR KGYVKGL+SEELLSHAEVVRLS KIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RVRQVGLVALEKLKKAAKT KMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Sed0007466 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 885.6 bits (2287), Expect = 1.0e-253
Identity = 463/508 (91.14%), Postives = 482/508 (94.88%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EKVLY++DHRLGQ+QVS TK VVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           SY  SNRH QCIKAVKE VDTPSSPTAEPWLH+T+I ED+E DLKCTV+ALLLLQKSMLE
Sbjct: 61  SYSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTVSTD   G T+KKVPVTCSGVSARQRR+SSKRKIQSKHV M QPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           KP ISPELLQNR +GYVKGLVSEE+L H+EVVRLS KIKVGLALEE KTRLKERL C+PS
Sbjct: 181 KPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTWILK EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAK  KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. ExPASy TrEMBL
Match: A0A6J1G739 (RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451427 PE=3 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 4.2e-252
Identity = 461/508 (90.75%), Postives = 482/508 (94.88%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EKVLY++DHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISEDDEIDLKCTVDALLLLQKSMLE 120
           SYP SNRH QCIKAVKE VDTPSSPTAEPWL++T+I ED+E DLKCTV+ALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTD---GNTKKKVPVTCSGVSARQRRLSSKRKIQSKHVLMTQPKISKQL 180
           KQWNLSFEQTVSTD   G T+KKVPVTCSGVSARQRR++SKRKIQSKHV M QPKISKQ 
Sbjct: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQ 180

Query: 181 KPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPS 240
           KP+ISPELLQNR +GYVKGLVSEE+L H+EVVRLS KIKVGLALEE KTRLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+IS AELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISCAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTW LK EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           VRQVGLVALEKLKKAAK  KMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Sed0007466 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 666.0 bits (1717), Expect = 2.4e-191
Identity = 357/516 (69.19%), Postives = 422/516 (81.78%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD  EK L V+DH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISE------DDEIDLKCTVDALLLLQ 121
           +PSSNRHTQ  KA+KE VD  S  T +PWL + +  E      DD+  +  +V+A+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTD-----GNTKKKVPV-TCSGVSARQRRLSSKRKIQSKHVLMT 181
           KSMLEK WNLSFE+ VS++        KKK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLK 241
                      +S      + +GYVKG++SE++LSH EVVRLS KIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISK 481
           HSYIAD RLENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 482 RIGLSRERVRQVGLVALEKLKKAAKTGKMEAMLLKH 506
           RIGLSRERVRQVGLVALEKLK AA+  KMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Sed0007466 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 619.0 bits (1595), Expect = 3.4e-177
Identity = 329/482 (68.26%), Postives = 391/482 (81.12%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFPEKVLYVSDHRLGQSQVSPTKSVVIAKSSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD  EK L V+DH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHTQCIKAVKELVDTPSSPTAEPWLHSTSISE------DDEIDLKCTVDALLLLQ 121
           +PSSNRHTQ  KA+KE VD  S  T +PWL + +  E      DD+  +  +V+A+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTD-----GNTKKKVPV-TCSGVSARQRRLSSKRKIQSKHVLMT 181
           KSMLEK WNLSFE+ VS++        KKK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLKPTISPELLQNRSKGYVKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLK 241
                      +S      + +GYVKG++SE++LSH EVVRLS KIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREIIRLYHGLDNECLTWEEISK 472
           HSYIAD RLENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 468

[Close]

BLAST of Sed0007466 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-40
Identity = 116/336 (34.52%), Postives = 187/336 (55.65%), Query Frame = 0


Query: 174 SKQLKPTISPELLQNRSKGYVKGLV-SEELLSHAEVVRLSMKIKVGLALEERKTRLKERL 233
           S + K  ++ E+  N    Y++    S +LL+  E   LS  I+  L LE  +T L ER 
Sbjct: 243 SPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERS 302

Query: 234 GCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 293
           G +P+  Q A +  + +  LR R+   +L ++K+  SN+RLV+SIA+ Y   G  + DLV
Sbjct: 303 GRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 362

Query: 294 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 353
           Q G  GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E    ++ 
Sbjct: 363 QEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKE 422

Query: 354 AKVRL-QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHS 413
           A+ +L  E G  P  + IAE+  +S K++     +     SLD++   + N  P E    
Sbjct: 423 ARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV--- 482

Query: 414 YIADNRLENNPWHGTDTWI---LKAEVNELINMTLGDREREIIRLYHGL-DNECLTWEEI 473
            IAD     +     D  I   ++ +++++++ +LG RE+++IR   G+ D    T +EI
Sbjct: 483 -IADPEAVTS----EDILIKEFMRQDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEI 542

Query: 474 SKRIGLSRERVRQVGLVALEKLKKAAKTGKMEAMLL 504
            + +G+SRERVRQ+   A  KLK   +   ++  L+
Sbjct: 543 GEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Sed0007466 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-35
Identity = 119/400 (29.75%), Postives = 204/400 (51.00%), Query Frame = 0


Query: 109 DALLLLQKSM-LEKQWNLSFEQTVSTDGNTKKKVPVTCSGVSARQRR--LSSKRKIQSKH 168
           D + L QK++   KQ  L  + T +   +  K    T S +S  ++   + SKR+++ + 
Sbjct: 139 DVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRA 198

Query: 169 VLMTQPKISKQLKPTISPELLQNRSKG------------YVKGLVSEELLSHAEVVRLSM 228
                PK +        P+    + K             ++ G  +++LL+  E   L  
Sbjct: 199 KNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELIS 258

Query: 229 KIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRL 288
            I+  L LE+ KT+L+ + GCEP+  + A ++ IS   L+S +     +REKL  +N+RL
Sbjct: 259 HIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRL 318

Query: 289 VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 348
           V+ IA++Y N G    DL+Q G +GL++ +EKF    G + +TY YWWIRQ + +++ +N
Sbjct: 319 VVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQN 378

Query: 349 SRTLRLPTHLHERLGLIRNA-KVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFS 408
           SRT+RLP +++  LG +  A K  +QE    PS + +A  + +S +K+           S
Sbjct: 379 SRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLS 438

Query: 409 LDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNELINMTLGDREREIIR 468
           + +  +   +     T      D+ +E  P       +++  V  L+N+ L  +ER II+
Sbjct: 439 MQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGKQLMRNHVRNLLNV-LSPKERRIIK 498

Query: 469 LYHGLD-NECLTWEEISKRIGLSRERVRQVGLVALEKLKK 492
           L  G+D  +  +  EI +  GLS+ERVRQ+   AL +LK+
Sbjct: 499 LRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of Sed0007466 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-35
Identity = 108/303 (35.64%), Postives = 155/303 (51.16%), Query Frame = 0


Query: 194 VKGLVSEELLSHAEVVRLSMKIKVGLALEERKTRLKERLGCEPSEDQLAISLKISRAELR 253
           V G      LS  E V+L + +K G  LE   T ++E        + +++ L   R + +
Sbjct: 114 VVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE-------NEMVSVLLASGRGKKK 173

Query: 254 SRVMEC----SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 313
               E       AREK+     RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  
Sbjct: 174 RSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPD 233

Query: 314 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRLQEK-GITPSLDR 373
           +G+K+STYVYWWI+Q + RA+   SR ++LP  + E    +  A   L  K    PS + 
Sbjct: 234 RGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEE 293

Query: 374 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDT 433
           IAE LN++   V+ A E      SLDR A  +     G      I     E  P      
Sbjct: 294 IAEHLNLNVSAVRLAVERSRSPVSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKR 353

Query: 434 WILKAEVNELINMTLGDREREIIRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALE 491
             +K E+ +L+  +L  RE  ++ LY GL+ E  +++EEI K + LSRERVRQ+  +AL+
Sbjct: 354 EHMKHEIEQLLG-SLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALK 403

The following BLAST results are available for this feature:

BLAST of Sed0007466 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902049.1	4.9e-263	94.70	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]
XP_022148631.1	4.0e-257	92.52	RNA polymerase sigma factor sigA [Momordica charantia] >XP_022148632.1 RNA polym...	[more]
XP_016902935.1	9.9e-256	92.34	PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA pol...	[more]
XP_023533104.1	8.4e-255	91.54	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
KAG6605170.1	1.4e-254	91.54	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Sed0007466 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	3.4e-190	69.19	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	4.6e-131	51.60	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
P38023	1.9e-39	36.48	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	3.2e-39	34.85	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	4.2e-39	34.52	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]

BLAST of Sed0007466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D604	1.9e-257	92.52	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]
A0A5D3BME8	4.8e-256	92.34	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	4.8e-256	92.34	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1KWY7	1.0e-253	91.14	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]
A0A6J1G739	4.2e-252	90.75	RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]

BLAST of Sed0007466 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	2.4e-191	69.19	sigma factor A	[more]
AT1G64860.2	3.4e-177	68.26	sigma factor A	[more]
AT1G08540.1	3.0e-40	34.52	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.3e-35	29.75	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	2.2e-35	35.64	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 478..489 score: 46.67 coord: 314..322 score: 64.52 coord: 443..455 score: 37.22 coord: 290..303 score: 49.68 coord: 463..478 score: 48.75
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 290..303
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 421..499 e-value: 2.1E-20 score: 74.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 337..387 e-value: 5.9E-7 score: 31.5
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 268..335 e-value: 1.5E-16 score: 59.9
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 73..336 e-value: 7.3E-33 score: 116.5
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 2..505
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..505
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 432..490 e-value: 6.89321E-8 score: 47.099
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 346..416 e-value: 3.0E-11 score: 43.3
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 442..491 e-value: 1.2E-10 score: 40.7
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 262..492 e-value: 6.1E-26 score: 89.0
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 338..394
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 418..494
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 191..336

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007466.1	Sed0007466.1	mRNA
Sed0007466.2	Sed0007466.2	mRNA
Sed0007466.3	Sed0007466.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0071461	cellular response to redox state
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity