Sed0007425 (gene) Chayote v1

Overview


Name	Sed0007425
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L27A
Location	LG06: 41532666 .. 41533458 (-)
RNA-Seq Expression	Sed0007425
Synteny	Sed0007425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGGCTACCCAAATGATATTGGGCTGGGCCGGAAGCTCATCTCTTCCTCGCATATCACACTCTTCTCCAACTAATATAAGCCTCCAAACCCTAGCGCCATTCAACACCCTCCTCGCCGCCGAAACCCTAGACGAGAACCAGAGAGCTCCGCCATGACAACCCGTCTCAAGAAGAACAGGAAGAAGAGGGGACACGTCAGCGCCGGCCATGGCCGAATCGGCAAGCACCGAAAGCATCCCGGCGGCAGAGGTAACGCCGGAGGTATGCACCACCACCGGATTCTGTTCGACAAGTATCACCCTGGTTATTTCGGCAAAGTCGGTATGCGATACTTCCACAAGCTTCGCAACAAATTCTACTGCCCGATCGTCAACGTCGACAAGATTTGGTCGATGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCGTTGGTCGATGTCACGCAGTTCGGTTACTTCAAGGTTTTGGGGAAGGGTGCGTTGCCGGAGAATCAGCCGTTTGTGGTGAAGGCTAAGCTCGTGTCGAAGATCGCTGAGAAGAAGATTAAGGAGGCTGGTGGCGCGGTGGTTCTTACGGCTTAGGTTTGAGTTAATCTTTTATTTTTTATGCGGATTTTTGTTGCTTTTGAATTTTGCATGTTGAAACTTATTGGAGGTTCTTTTGATATAATTTTAAGCAGATCTTATGAATTATGAGTTCATATGCTCTTAACTGATGTGATGTTTGAATTGCCTTATTTATTTATTTATGCTACTGCTTGATCCTTAGGTTATTTGAG

mRNA sequence

AATTGGGCTACCCAAATGATATTGGGCTGGGCCGGAAGCTCATCTCTTCCTCGCATATCACACTCTTCTCCAACTAATATAAGCCTCCAAACCCTAGCGCCATTCAACACCCTCCTCGCCGCCGAAACCCTAGACGAGAACCAGAGAGCTCCGCCATGACAACCCGTCTCAAGAAGAACAGGAAGAAGAGGGGACACGTCAGCGCCGGCCATGGCCGAATCGGCAAGCACCGAAAGCATCCCGGCGGCAGAGGTAACGCCGGAGGTATGCACCACCACCGGATTCTGTTCGACAAGTATCACCCTGGTTATTTCGGCAAAGTCGGTATGCGATACTTCCACAAGCTTCGCAACAAATTCTACTGCCCGATCGTCAACGTCGACAAGATTTGGTCGATGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCGTTGGTCGATGTCACGCAGTTCGGTTACTTCAAGGTTTTGGGGAAGGGTGCGTTGCCGGAGAATCAGCCGTTTGTGGTGAAGGCTAAGCTCGTGTCGAAGATCGCTGAGAAGAAGATTAAGGAGGCTGGTGGCGCGGTGGTTCTTACGGCTTAGGTTTGAGTTAATCTTTTATTTTTTATGCGGATTTTTGTTGCTTTTGAATTTTGCATGTTGAAACTTATTGGAGGTTCTTTTGATATAATTTTAAGCAGATCTTATGAATTATGAGTTCATATGCTCTTAACTGATGTGATGTTTGAATTGCCTTATTTATTTATTTATGCTACTGCTTGATCCTTAGGTTATTTGAG

Coding sequence (CDS)

ATGACAACCCGTCTCAAGAAGAACAGGAAGAAGAGGGGACACGTCAGCGCCGGCCATGGCCGAATCGGCAAGCACCGAAAGCATCCCGGCGGCAGAGGTAACGCCGGAGGTATGCACCACCACCGGATTCTGTTCGACAAGTATCACCCTGGTTATTTCGGCAAAGTCGGTATGCGATACTTCCACAAGCTTCGCAACAAATTCTACTGCCCGATCGTCAACGTCGACAAGATTTGGTCGATGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCGTTGGTCGATGTCACGCAGTTCGGTTACTTCAAGGTTTTGGGGAAGGGTGCGTTGCCGGAGAATCAGCCGTTTGTGGTGAAGGCTAAGCTCGTGTCGAAGATCGCTGAGAAGAAGATTAAGGAGGCTGGTGGCGCGGTGGTTCTTACGGCTTAG

Protein sequence

MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPFVVKAKLVSKIAEKKIKEAGGAVVLTA

Homology

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BLAST of Sed0007425 vs. NCBI nr
Match: XP_008446169.1 (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022957581.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022966982.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_022984987.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_023523163.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_023541079.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_031741794.1 60S ribosomal protein L27a-3 [Cucumis sativus] >KAA0034278.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >KAG6573714.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012791.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6601534.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KGN51763.1 hypothetical protein Csa_007887 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 8.5e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of Sed0007425 vs. NCBI nr
Match: XP_038891740.1 (60S ribosomal protein L27a-3-like [Benincasa hispida])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGG+VVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGSVVLTA 146

[Close]

BLAST of Sed0007425 vs. NCBI nr
Match: XP_022151906.1 (60S ribosomal protein L27a-3 [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKNAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. NCBI nr
Match: XP_021630408.1 (60S ribosomal protein L27a-3-like [Manihot esculenta] >OAY34477.1 hypothetical protein MANES_12G023300v8 [Manihot esculenta])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVN+DK+WSMIPQE KDK+SKDNVPLVDVTQFGYFKVLGKGALPENQP 
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMIPQEAKDKSSKDNVPLVDVTQFGYFKVLGKGALPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. NCBI nr
Match: XP_021632091.1 (60S ribosomal protein L27a-3-like [Manihot esculenta] >OAY32526.1 hypothetical protein MANES_13G025100v8 [Manihot esculenta])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVN+DK+WSMIPQEVKDK SKDNVPLVDVTQFGYFKVLGKGALPEN+P 
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMIPQEVKDKTSKDNVPLVDVTQFGYFKVLGKGALPENKPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of Sed0007425 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 4.1e-72
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKF+CPIVN+DK+WS++P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+PF
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKF+CPIVN+DK+WS++P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+PF
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy Swiss-Prot
Match: O01358 (60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-49
Identity = 96/146 (65.75%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M   L+K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FH  +N  YCP VNVD++W+++P+E K K S +  P++D  + GYFKVLGKG LP+ QP 
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

[Close]

BLAST of Sed0007425 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 195.7 bits (496), Expect = 3.7e-49
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +RL+K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGALPEN 120
           +H  RN+ +CP VN+DK+W+++ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPFVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP +VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Sed0007425 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 195.7 bits (496), Expect = 3.7e-49
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +RL+K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGALPEN 120
           +H  RN+ +CP VN+DK+W+++ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPFVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP +VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Sed0007425 vs. ExPASy TrEMBL
Match: A0A6J1J3M5 (60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy TrEMBL
Match: A0A6J1GZL8 (60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy TrEMBL
Match: A0A5D3CUR0 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001380 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy TrEMBL
Match: A0A0A0KQ56 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. ExPASy TrEMBL
Match: A0A1S3BF89 (60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYCPIVNVDKIWS+IPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQP 
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-73
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTR KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKF+CPIVN+DK+WS++P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+PF
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 8.5e-73
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKF+CPIVN+DK+WS++P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+PF
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Sed0007425 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 80/145 (55.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 1   MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSMIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPF 120
           FHKLRNKFYC IVN+DK+WSM                          VLGKG LPEN+P 
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLT 146
           VVKAKLVS   EKKIKEAG AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of Sed0007425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446169.1	8.5e-75	97.26	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribos...	[more]
XP_038891740.1	1.9e-74	96.58	60S ribosomal protein L27a-3-like [Benincasa hispida]	[more]
XP_022151906.1	1.9e-74	97.26	60S ribosomal protein L27a-3 [Momordica charantia]	[more]
XP_021630408.1	1.9e-74	95.89	60S ribosomal protein L27a-3-like [Manihot esculenta] >OAY34477.1 hypothetical p...	[more]
XP_021632091.1	2.5e-74	95.89	60S ribosomal protein L27a-3-like [Manihot esculenta] >OAY32526.1 hypothetical p...	[more]

BLAST of Sed0007425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	4.1e-72	87.67	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	1.2e-71	87.67	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
O01358	2.2e-49	65.75	60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1	[more]
Q56K03	3.7e-49	63.76	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]
P14115	3.7e-49	63.76	60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5	[more]

BLAST of Sed0007425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3M5	4.1e-75	97.26	60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV...	[more]
A0A6J1GZL8	4.1e-75	97.26	60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 ...	[more]
A0A5D3CUR0	4.1e-75	97.26	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KQ56	4.1e-75	97.26	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3BF89	4.1e-75	97.26	60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1	[more]

BLAST of Sed0007425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	2.9e-73	87.67	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	8.5e-73	87.67	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	2.3e-30	55.17	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 5.9E-39 score: 134.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 4.3E-20 score: 72.7
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.813934
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007425.1	Sed0007425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome