Sed0007367 (gene) Chayote v1

Overview


Name	Sed0007367
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP synthase subunit b, chloroplastic
Location	Contig00297: 181302 .. 182602 (+)
RNA-Seq Expression	Sed0007367
Synteny	Sed0007367

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATGTAACCGATTCTTTCATTTCTTTGGGTTACTGGCCATCTGCCGAGAGTTTCGGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGCGTAGTGCTTGGTGTATTGATTTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTTTATTTCAAGAATAAGTTGGATACAACCAACTGTACTTTTCTCGTTATAACTACGAAAAGGTGCATGATCCCGCGAATTACTTCTGACAAAATGCAGAAATCATATTGAAGAACCATAGCATTTCGTGATTTATTGGGAAATCAACTTTGATTCTCTATCAACCAATAATGTGGGACCATTAACATGGTTAAAGCTAAACCGTTTGAAGTCCGGACGCAGCATGGTACTCTTTCTACTACTATGTTAATACATAAATCGTTTCAAATAGTTGGGATTTTTTTTTTGATATAGAACACTCATGTCGATAAAATGATTTGAACCCCTTTATTTTATTATAATTTTTTTGTAAAAAACTGGAAAAATGAGTATTTCACCCTCATTTTTTGTTTTTTATCCAATGCTGAATCGATGACCTATGTTATGTATAAAGTAATAAAAATTCTTTGGATTTGAATAAAAAAAACAAACAACTTTGCTGACAATTGTTTGTTTGGTCAGAAGAGTCCTCCGATCGGGTCTTGGATTAATGATCAATTTTTTTTTGTTATTTTTCTTTGTGGAATATGAATAGAGAAAAGAGGATAGGCTCATTACATTCAAAAAGATATATGGGAATTTCCCAGAAATAATTGCAATAATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGGGATCGTCGAAGTTTTGAAATGAATGCAAAGACAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAACAGAAGATCTTGAAAACAATTCAAAATTCAGAAGACCTCCGCGAGGGGGCCATTGAACAGCTGGAAAAAGCACGGGCCCGCTTACGGAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTCGAAAATTATAAAAATGAAACTATTCGTTTTGAACAACAAAGAGCGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTCAATAGTTGTTTGGACAACGAGTTACATTTACGTACCATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA

mRNA sequence

ATGAAAAATGTAACCGATTCTTTCATTTCTTTGGGTTACTGGCCATCTGCCGAGAGTTTCGGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGCGTAGTGCTTGGTGTATTGATTTTTTTTGGAAAGGGAGTGTACAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAACAGAAGATCTTGAAAACAATTCAAAATTCAGAAGACCTCCGCGAGGGGGCCATTGAACAGCTGGAAAAAGCACGGGCCCGCTTACGGAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTCGAAAATTATAAAAATGAAACTATTCGTTTTGAACAACAAAGAGCGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTCAATAGTTGTTTGGACAACGAGTTACATTTACGTACCATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA

Coding sequence (CDS)

ATGAAAAATGTAACCGATTCTTTCATTTCTTTGGGTTACTGGCCATCTGCCGAGAGTTTCGGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGCGTAGTGCTTGGTGTATTGATTTTTTTTGGAAAGGGAGTGTACAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAACAGAAGATCTTGAAAACAATTCAAAATTCAGAAGACCTCCGCGAGGGGGCCATTGAACAGCTGGAAAAAGCACGGGCCCGCTTACGGAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTCGAAAATTATAAAAATGAAACTATTCGTTTTGAACAACAAAGAGCGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTCAATAGTTGTTTGGACAACGAGTTACATTTACGTACCATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA

Protein sequence

MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDNRKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Homology

[Close]

BLAST of Sed0007367 vs. NCBI nr
Match: QDH07731.1 (AtpF [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 5.2e-93
Identity = 184/189 (97.35%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSE+LR GAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEELRGGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQKAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 189

[Close]

BLAST of Sed0007367 vs. NCBI nr
Match: YP_009945403.1 (ATP synthase CF0 subunit I [Sechium edule] >QIT04119.1 CF0 subunit I [Sechium edule] >QOE55933.1 ATP synthase CF0 subunit I [Sechium edule])

HSP 1 Score: 344.7 bits (883), Expect = 4.9e-91
Identity = 184/189 (97.35%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. NCBI nr
Match: YP_009752482.1 (CF0 subunit I [Trichosanthes tubiflora] >QIT04878.1 CF0 subunit I [Trichosanthes tubiflora])

HSP 1 Score: 341.3 bits (874), Expect = 5.4e-90
Identity = 182/189 (96.30%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. NCBI nr
Match: YP_009752145.1 (CF0 subunit I [Linnaeosicyos amara] >QIT05555.1 CF0 subunit I [Linnaeosicyos amara])

HSP 1 Score: 339.7 bits (870), Expect = 1.6e-89
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSEDLREGAIEQLEKAR RLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEDLREGAIEQLEKARTRLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. NCBI nr
Match: YP_004841769.1 (ATP synthase CF0 subunit I [Cucumis melo subsp. melo] >YP_009860059.1 ATP synthase CF0 subunit I [Cucumis melo subsp. agrestis] >AEM76878.1 ATP synthase CF0 subunit I [Cucumis melo subsp. melo] >QKK36642.1 ATP synthase CF0 subunit I [Cucumis melo subsp. agrestis] >QRW36541.1 ATPase subunit I [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 3.5e-89
Identity = 180/189 (95.24%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSE+LREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEELREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQKAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot
Match: Q4VZP7 (ATP synthase subunit b, chloroplastic OS=Cucumis sativus OX=3659 GN=atpF PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.0e-91
Identity = 179/189 (94.71%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSE+LR GAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEELRGGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQKAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot
Match: Q09X31 (ATP synthase subunit b, chloroplastic OS=Morus indica OX=248361 GN=atpF PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.2e-84
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTD F+SL YWPSA SFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDPFLSLSYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTI+NSE+LREGA+EQLEKAR+RLRKVE EADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIRNSEELREGALEQLEKARSRLRKVEKEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           K+LEQ ENYKNETI FEQQRAIN+VRQ+VFQQAL+GALGTLNSCL+NELHLRTIS NIGM
Sbjct: 121 KTLEQLENYKNETIHFEQQRAINEVRQRVFQQALEGALGTLNSCLNNELHLRTISTNIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEIT+
Sbjct: 181 FGTMKEITD 184

[Close]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot
Match: Q49L12 (ATP synthase subunit b, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpF PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-84
Identity = 166/189 (87.83%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSF+SLG+WPSA SFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+IL TI+NSE+LR GAIEQLEKARARLRKVEMEA+QFRVNGYSEIE+EKLNLINST 
Sbjct: 61  RKQRILNTIRNSEELRGGAIEQLEKARARLRKVEMEAEQFRVNGYSEIEQEKLNLINSTY 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           K+LEQ ENYKNETI FEQQRAINQVRQ+VFQQALQGALGTLNSCL+NELHLRTISANIGM
Sbjct: 121 KTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FG MKEIT+
Sbjct: 181 FGAMKEITD 184

[Close]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot
Match: Q8S8Y2 (ATP synthase subunit b, chloroplastic OS=Atropa belladonna OX=33113 GN=atpF PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.6e-84
Identity = 165/189 (87.30%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSF+SLG+WPSA SFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+IL TI+NSE+LREGAIEQLEKAR+RLRKVE EA+QFRVNGYSEIEREKLNLINST 
Sbjct: 61  RKQRILNTIRNSEELREGAIEQLEKARSRLRKVETEAEQFRVNGYSEIEREKLNLINSTY 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           K+LEQ ENYKNETI+FEQQRAINQVRQ+VFQQAL+GALGTLNSCL+NELHLRTISANIGM
Sbjct: 121 KTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
            GTMKEIT+
Sbjct: 181 LGTMKEITD 184

[Close]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot
Match: Q14FH1 (ATP synthase subunit b, chloroplastic OS=Populus alba OX=43335 GN=atpF PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.6e-84
Identity = 166/189 (87.83%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKN+TDSF+SLG+W SA SFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNITDSFVSLGHWSSAGSFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+IL TI+NSE+LR GAIEQLEKARARLRKVE+EADQFRVNGYSEIEREKLNLINST 
Sbjct: 61  RKQRILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTY 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           K+LEQ ENYKNETI FEQQRAINQVRQ+VFQQALQGALGTLNSCL NELHLRTISANIGM
Sbjct: 121 KTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLTNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FG MKEITN
Sbjct: 181 FGAMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy TrEMBL
Match: A0A513X1C2 (ATP synthase subunit b, chloroplastic OS=Cucumis sativus OX=3659 GN=atpF PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.5e-93
Identity = 184/189 (97.35%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSE+LR GAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEELRGGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQKAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 189

[Close]

BLAST of Sed0007367 vs. ExPASy TrEMBL
Match: A0A6H0ERF8 (ATP synthase subunit b, chloroplastic OS=Sechium edule OX=184140 GN=atpF PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 184/189 (97.35%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy TrEMBL
Match: A0A6H0ER88 (ATP synthase subunit b, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=atpF PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-90
Identity = 182/189 (96.30%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy TrEMBL
Match: A0A6H0EUN5 (ATP synthase subunit b, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=atpF PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.6e-90
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSEDLREGAIEQLEKAR RLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEDLREGAIEQLEKARTRLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. ExPASy TrEMBL
Match: A0A6H0ESX2 (ATP synthase subunit b, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN=atpF PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV     LSDLLDN
Sbjct: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGV-----LSDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+ILKTIQNSEDLR GAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS
Sbjct: 61  RKQRILKTIQNSEDLRGGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           KSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM
Sbjct: 121 KSLEQLENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEITN
Sbjct: 181 FGTMKEITN 184

[Close]

BLAST of Sed0007367 vs. TAIR 10
Match: ATCG00130.1 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast )

HSP 1 Score: 298.1 bits (762), Expect = 4.9e-81
Identity = 156/189 (82.54%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGVYNLLSLSDLLDN 60
           MKN+TDSF+ LG+WPSA SFGFNTDILATNPINLSVV GVLIFFGKGV     L+DLLDN
Sbjct: 1   MKNLTDSFVYLGHWPSAGSFGFNTDILATNPINLSVVFGVLIFFGKGV-----LNDLLDN 60

Query: 61  RKQKILKTIQNSEDLREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTS 120
           RKQ+IL TI+NSE+LREGAI+QLE ARARLR VE EAD+FRVNGYSEIEREKLNLINST 
Sbjct: 61  RKQRILNTIRNSEELREGAIQQLENARARLRNVETEADKFRVNGYSEIEREKLNLINSTY 120

Query: 121 KSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGM 180
           K+L+Q ENYKNETI FEQQR INQVR++VFQQALQGA+GTLNSCL NELHLRTI+ANIGM
Sbjct: 121 KTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGM 180

Query: 181 FGTMKEITN 190
           FGTMKEIT+
Sbjct: 181 FGTMKEITD 184

The following BLAST results are available for this feature:

BLAST of Sed0007367 vs. NCBI nr


Match Name	E-value	Identity	Description
QDH07731.1	5.2e-93	97.35	AtpF [Cucumis sativus]	[more]
YP_009945403.1	4.9e-91	97.35	ATP synthase CF0 subunit I [Sechium edule] >QIT04119.1 CF0 subunit I [Sechium ed...	[more]
YP_009752482.1	5.4e-90	96.30	CF0 subunit I [Trichosanthes tubiflora] >QIT04878.1 CF0 subunit I [Trichosanthes...	[more]
YP_009752145.1	1.6e-89	95.77	CF0 subunit I [Linnaeosicyos amara] >QIT05555.1 CF0 subunit I [Linnaeosicyos ama...	[more]
YP_004841769.1	3.5e-89	95.24	ATP synthase CF0 subunit I [Cucumis melo subsp. melo] >YP_009860059.1 ATP syntha...	[more]

BLAST of Sed0007367 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP7	3.0e-91	94.71	ATP synthase subunit b, chloroplastic OS=Cucumis sativus OX=3659 GN=atpF PE=3 SV...	[more]
Q09X31	1.2e-84	87.30	ATP synthase subunit b, chloroplastic OS=Morus indica OX=248361 GN=atpF PE=3 SV=...	[more]
Q49L12	2.7e-84	87.83	ATP synthase subunit b, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=...	[more]
Q8S8Y2	4.6e-84	87.30	ATP synthase subunit b, chloroplastic OS=Atropa belladonna OX=33113 GN=atpF PE=3...	[more]
Q14FH1	4.6e-84	87.83	ATP synthase subunit b, chloroplastic OS=Populus alba OX=43335 GN=atpF PE=3 SV=1	[more]

BLAST of Sed0007367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A513X1C2	2.5e-93	97.35	ATP synthase subunit b, chloroplastic OS=Cucumis sativus OX=3659 GN=atpF PE=3 SV...	[more]
A0A6H0ERF8	2.4e-91	97.35	ATP synthase subunit b, chloroplastic OS=Sechium edule OX=184140 GN=atpF PE=3 SV...	[more]
A0A6H0ER88	2.6e-90	96.30	ATP synthase subunit b, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=a...	[more]
A0A6H0EUN5	7.6e-90	95.77	ATP synthase subunit b, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=atpF P...	[more]
A0A6H0ESX2	1.7e-89	95.77	ATP synthase subunit b, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN...	[more]

BLAST of Sed0007367 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00130.1	4.9e-81	82.54	ATPase, F0 complex, subunit B/B', bacterial/chloroplast	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..103
None	No IPR available	PANTHER	PTHR34264	ATP SYNTHASE SUBUNIT B, CHLOROPLASTIC	coord: 1..181
None	No IPR available	CDD	cd06503	ATP-synt_Fo_b	coord: 26..157 e-value: 6.42326E-15 score: 66.3071
IPR002146	ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast	PFAM	PF00430	ATP-synt_B	coord: 27..161 e-value: 3.5E-30 score: 104.8
IPR002146	ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast	HAMAP	MF_01398	ATP_synth_b_bprime	coord: 21..163 score: 10.758375

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007367.1	Sed0007367.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0015078	proton transmembrane transporter activity