Sed0007342 (gene) Chayote v1

Overview


Name	Sed0007342
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LysM domain-containing protein
Location	LG07: 7801007 .. 7801387 (+)
RNA-Seq Expression	Sed0007342
Synteny	Sed0007342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAAAAAAACTAAAAAAATTCTCTAATTTCCACCATGGCCGCCGTCTCTGTTCCCAGACCCTTAACCGACGTCGTTTCTTGGTACTGCGCCGTGGGCCTATTGGGCCTGATTTTGATCGGGTCCATCAGAGAAACCTCCTCCGCCGCCGCCGTCGCCGGTGGCCGGATTCTGAGAGGCAGCTTGCTGACGTGGCGGCCGTGCGATGAGATTTACGTTGTGGGAGAAGGGGAAACGCTTCACACGATTAGCGATAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCACGACCCGGATGATGTCTTTCCGGGTTTGGTCATCAAAATTATCTCTTCTTCAAATTCAAATTCCAATCCTACCCAATTTTGA

mRNA sequence

CCAAAAAAAAACTAAAAAAATTCTCTAATTTCCACCATGGCCGCCGTCTCTGTTCCCAGACCCTTAACCGACGTCGTTTCTTGGTACTGCGCCGTGGGCCTATTGGGCCTGATTTTGATCGGGTCCATCAGAGAAACCTCCTCCGCCGCCGCCGTCGCCGGTGGCCGGATTCTGAGAGGCAGCTTGCTGACGTGGCGGCCGTGCGATGAGATTTACGTTGTGGGAGAAGGGGAAACGCTTCACACGATTAGCGATAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCACGACCCGGATGATGTCTTTCCGGGTTTGGTCATCAAAATTATCTCTTCTTCAAATTCAAATTCCAATCCTACCCAATTTTGA

Coding sequence (CDS)

ATGGCCGCCGTCTCTGTTCCCAGACCCTTAACCGACGTCGTTTCTTGGTACTGCGCCGTGGGCCTATTGGGCCTGATTTTGATCGGGTCCATCAGAGAAACCTCCTCCGCCGCCGCCGTCGCCGGTGGCCGGATTCTGAGAGGCAGCTTGCTGACGTGGCGGCCGTGCGATGAGATTTACGTTGTGGGAGAAGGGGAAACGCTTCACACGATTAGCGATAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCACGACCCGGATGATGTCTTTCCGGGTTTGGTCATCAAAATTATCTCTTCTTCAAATTCAAATTCCAATCCTACCCAATTTTGA

Protein sequence

MAAVSVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNPTQF

Homology

[Close]

BLAST of Sed0007342 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 5   SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGE 64
           S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGE
Sbjct: 16  SSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG-DQGRSLRGNLVTWRPCDEIYVVGE 75

Query: 65  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNPT 113
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS  N+ PT
Sbjct: 76  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNNLPT 122

[Close]

BLAST of Sed0007342 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 93/121 (76.86%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 1   MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLL 60
           M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+
Sbjct: 7   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSS---GDGRLLRGNLV 66

Query: 61  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNP 113
           TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   + P
Sbjct: 67  TWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHINLP 124

[Close]

BLAST of Sed0007342 vs. NCBI nr
Match: XP_004150301.1 (uncharacterized protein LOC101210054 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 93/121 (76.86%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 1   MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLL 60
           M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSS---GDGRLLRGNLV 60

Query: 61  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNP 113
           TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   + P
Sbjct: 61  TWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHINLP 118

[Close]

BLAST of Sed0007342 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 8   RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGE 67
           RP TDVVSWYCAVG+L LILIGSIRE T SA A   GR+ RG+L+  RPCDEIYVVGEGE
Sbjct: 17  RPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGE 76

Query: 68  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN-SNS 110
           TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN SNS
Sbjct: 77  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNS 120

[Close]

BLAST of Sed0007342 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 4.5e-39
Identity = 85/101 (84.16%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 8   RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVA--GGRILRGSLLTWRPCDEIYVVGEG 67
           R L DVVSWYCA+ LLGLILIGSIRETSS++A A  GG++LRG+LLT R CDEIYVVGEG
Sbjct: 15  RLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEG 74

Query: 68  ETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN 107
           ETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS N
Sbjct: 75  ETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHN 115

[Close]

BLAST of Sed0007342 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 5   SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGE 64
           S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGE
Sbjct: 16  SSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG-DQGRSLRGNLVTWRPCDEIYVVGE 75

Query: 65  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNPT 113
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS  N+ PT
Sbjct: 76  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNNLPT 122

[Close]

BLAST of Sed0007342 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 5   SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGE 64
           S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGE
Sbjct: 16  SSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG-DQGRSLRGNLVTWRPCDEIYVVGE 75

Query: 65  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNPT 113
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS  N+ PT
Sbjct: 76  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNNLPT 122

[Close]

BLAST of Sed0007342 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 93/121 (76.86%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 1   MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLL 60
           M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSS---GDGRLLRGNLV 60

Query: 61  TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSNP 113
           TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   + P
Sbjct: 61  TWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHINLP 118

[Close]

BLAST of Sed0007342 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.7e-40
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 8   RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGE 67
           RP TDVVSWYCAVG+L LILIGSIRE T SA A   GR+ RG+L+  RPCDEIYVVGEGE
Sbjct: 17  RPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGE 76

Query: 68  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN-SNS 110
           TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN SNS
Sbjct: 77  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNS 120

[Close]

BLAST of Sed0007342 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 8   RPLTDVVSWYCAVGLLGLILIGSIRET-SSAAAVAGGRILRGSLLTWRPCDEIYVVGEGE 67
           R L DVVSWYCAV +LGLILIGSIRET SSA+A  G ++LRG+LLT R CDEIYVVGEGE
Sbjct: 15  RLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDEIYVVGEGE 74

Query: 68  TLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN 107
           TLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS N
Sbjct: 75  TLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHN 114

[Close]

BLAST of Sed0007342 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-29
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 11  TDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHT 70
           +D+ +W  AV LL LIL+ S+RE +++ ++      RGS  + +PC+EIY+VGEGETLHT
Sbjct: 9   SDMSAWCSAVVLLSLILLLSVRENNASNSI------RGSQFSTKPCEEIYIVGEGETLHT 68

Query: 71  ISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 102
           I DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 69  IGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Sed0007342 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MAAVSVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAA--VAGGR---ILRGSLLTWRP 60
           M  V+V R  ++ V+ YC V LL L L GS++ ++   +     GR   + RG  +  RP
Sbjct: 1   MIRVTVSR--SNTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERP 60

Query: 61  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 102
           C+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 61  CEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Sed0007342 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 10  LTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTW----RP-CDEIYVVGE 69
           + + +SWYCAV    ++L+ S +     +     +     ++T     RP CDEIY V E
Sbjct: 9   VAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKE 68

Query: 70  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 105
           GETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 69  GETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

The following BLAST results are available for this feature:

BLAST of Sed0007342 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439155.1	2.3e-43	84.26	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
KGN57357.2	1.1e-42	76.86	hypothetical protein Csa_009741 [Cucumis sativus]	[more]
XP_004150301.1	1.1e-42	76.86	uncharacterized protein LOC101210054 [Cucumis sativus]	[more]
XP_022157015.1	1.2e-39	84.62	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
KAG6576752.1	4.5e-39	84.16	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0007342 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAP9	1.1e-43	84.26	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	1.1e-43	84.26	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A0A0L5R9	5.5e-43	76.86	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]
A0A6J1DRZ3	5.7e-40	84.62	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1J769	1.8e-38	84.00	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]

BLAST of Sed0007342 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	7.7e-29	63.74	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	2.7e-26	55.66	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.4e-19	48.00	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 52..113 e-value: 1.6E-7 score: 32.8
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 60..101 e-value: 1.9E-4 score: 21.5
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 59..101 e-value: 4.45425E-5 score: 36.3093
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 8..108
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 8..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007342.1	Sed0007342.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity