Sed0007300 (gene) Chayote v1

Overview


Name	Sed0007300
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL56-like
Location	LG08: 37787168 .. 37788125 (-)
RNA-Seq Expression	Sed0007300
Synteny	Sed0007300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAGTAGTTGTCAATTGCTCAGCCTCTCTGTCTTATTTTGGATTTCCTAAAGGGTGTTTAAGAAAATAGAGGAATTTGTGACACTAAAAAAGGACAAGAGCCAGAAGAACACTCAATACCATCATTATCATCATCACCCTATGTTGATTTTACCACAGTGATATCACCCACCCCTTTTTCTTTTTGTCAATAAAAACAAAACTCAAAAAAGGTGTAAGCTTGAAGATCCAAAAATGAGCAGTTTCCACAACTGACATAAACTTTCAAACAAAACACAGAGACCCACAAAAACTTCATCTTTCCCTAAAAAACTTGTGAGATTGGTTGGTTTTTTTGGATTTCAAGAACTATGGTAATGGAGATTGTCGTGTCGGCGGTTCTGATGCTGGTCGCGATCGCGGTTTTGGTGGCGATTCATCTGTGTATTGTTGGGGTGATGTTCAGAGGAGAAAGGGGAGGGATTATTCTATGGAGAAGAAGAAAGAGACTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAGTTGGAGGAAAAACAGAGGGTTGATTTGGATTTGGAATGTGTGGTTTGTTTGGAGGGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCTAATTGTAGCCATACTTTTCATGTTGAGTGTATAGATTCTTGGCTTTTGAAGAGACCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTTCCCAAAATTGGCTTGGTTTTGGAGCACCAAAATGGTGGGGTTTTGCCAAATTGAACTCTTTTTGGAACAGTTTTTCGATCAAGTTCCGCCGCCCGGTGCGGTGGCCGGAGAAAGATGAAGCGCCGCCGTTTCTGTCTGTAAGTGGGGTCGAAGTTTTTTTTCACTGTAATGGGTGAAAAAGTTGGAGAAGTTGGCAAAGGCAAGAGGCTAAGAAGAAGAGTTAAGAAAAAGTAAGTTAATGGAG

mRNA sequence

TCACAGTAGTTGTCAATTGCTCAGCCTCTCTGTCTTATTTTGGATTTCCTAAAGGGTGTTTAAGAAAATAGAGGAATTTGTGACACTAAAAAAGGACAAGAGCCAGAAGAACACTCAATACCATCATTATCATCATCACCCTATGTTGATTTTACCACAGTGATATCACCCACCCCTTTTTCTTTTTGTCAATAAAAACAAAACTCAAAAAAGGTGTAAGCTTGAAGATCCAAAAATGAGCAGTTTCCACAACTGACATAAACTTTCAAACAAAACACAGAGACCCACAAAAACTTCATCTTTCCCTAAAAAACTTGTGAGATTGGTTGGTTTTTTTGGATTTCAAGAACTATGGTAATGGAGATTGTCGTGTCGGCGGTTCTGATGCTGGTCGCGATCGCGGTTTTGGTGGCGATTCATCTGTGTATTGTTGGGGTGATGTTCAGAGGAGAAAGGGGAGGGATTATTCTATGGAGAAGAAGAAAGAGACTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAGTTGGAGGAAAAACAGAGGGTTGATTTGGATTTGGAATGTGTGGTTTGTTTGGAGGGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCTAATTGTAGCCATACTTTTCATGTTGAGTGTATAGATTCTTGGCTTTTGAAGAGACCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTTCCCAAAATTGGCTTGGTTTTGGAGCACCAAAATGGTGGGGTTTTGCCAAATTGAACTCTTTTTGGAACAGTTTTTCGATCAAGTTCCGCCGCCCGGTGCGGTGGCCGGAGAAAGATGAAGCGCCGCCGTTTCTGTCTGTAAGTGGGGTCGAAGTTTTTTTTCACTGTAATGGGTGAAAAAGTTGGAGAAGTTGGCAAAGGCAAGAGGCTAAGAAGAAGAGTTAAGAAAAAGTAAGTTAATGGAG

Coding sequence (CDS)

ATGGTAATGGAGATTGTCGTGTCGGCGGTTCTGATGCTGGTCGCGATCGCGGTTTTGGTGGCGATTCATCTGTGTATTGTTGGGGTGATGTTCAGAGGAGAAAGGGGAGGGATTATTCTATGGAGAAGAAGAAAGAGACTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAGTTGGAGGAAAAACAGAGGGTTGATTTGGATTTGGAATGTGTGGTTTGTTTGGAGGGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCTAATTGTAGCCATACTTTTCATGTTGAGTGTATAGATTCTTGGCTTTTGAAGAGACCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTTCCCAAAATTGGCTTGGTTTTGGAGCACCAAAATGGTGGGGTTTTGCCAAATTGA

Protein sequence

MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRRKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRTCAAVPKIGLVLEHQNGGVLPN

Homology

[Close]

BLAST of Sed0007300 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-48
Identity = 107/135 (79.26%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCY 60
           MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLGKNLSNQDLEKLPCY 60

Query: 61  EYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT 120
           EYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+FHVECIDSWLLK PICPICRT
Sbjct: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRT 120

Query: 121 CAAVPKIGLVLEHQN 133
           CAAVPK GLVLEHQN
Sbjct: 121 CAAVPKFGLVLEHQN 133

[Close]

BLAST of Sed0007300 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-48
Identity = 106/135 (78.52%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCY 60
           MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLGKNLSNQDLEKLPCY 60

Query: 61  EYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT 120
           EYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+FHVECIDSWLLK PICPICRT
Sbjct: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRT 120

Query: 121 CAAVPKIGLVLEHQN 133
           CA VPK GLVLEHQN
Sbjct: 121 CAVVPKFGLVLEHQN 133

[Close]

BLAST of Sed0007300 vs. NCBI nr
Match: XP_030475587.1 (RING-H2 finger protein ATL56-like [Syzygium oleosum])

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-31
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFR--GERGGIILWRRRK---RLSKEDLEKL 60
           MVMEI+VS VL+ V IAVLV IH+CIVG  FR  G RGG++         +LS EDL+KL
Sbjct: 1   MVMEIIVSVVLLFVGIAVLVVIHVCIVGRAFREGGFRGGLVQRNGNSTTVKLSTEDLKKL 60

Query: 61  PCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPIC 120
           PC+EY  EEK     D++C VCLE FK GE+CRLLPNC H FH +CIDSWLLK PICPIC
Sbjct: 61  PCFEYGSEEK-AFSRDVDCAVCLENFKAGEKCRLLPNCKHCFHAQCIDSWLLKTPICPIC 120

Query: 121 RTCAAVPK 124
           RT  A P+
Sbjct: 121 RTGIAPPE 127

[Close]

BLAST of Sed0007300 vs. NCBI nr
Match: TQD76870.1 (hypothetical protein C1H46_037576 [Malus baccata])

HSP 1 Score: 144.4 bits (363), Expect = 7.1e-31
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 3   MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLP 62
           MEI++S +L+ V +AVLV IH+CI+G  F RG   G+ L +R      K++S E+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPIC 122
           C++Y  EEK    +  ++C VCLE FK GE+CRLLPNC H+FH +CIDSWLLK P+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAAVPKIGLVLEHQNG 134
           RTCA  PKI + L   +G
Sbjct: 121 RTCAKTPKIDVSLGGASG 138

[Close]

BLAST of Sed0007300 vs. NCBI nr
Match: PRQ17332.1 (putative transcription factor C2H2 family [Rosa chinensis])

HSP 1 Score: 144.4 bits (363), Expect = 7.1e-31
Identity = 73/131 (55.73%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLE 60
           MVMEIV+S +L+ V IAVLV IH+CIVG  F G    +  G+++ RR    KR+S E+L 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRTFNGGSNIQGVGMVVQRRSFGMKRMSIEELN 60

Query: 61  KLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICP 120
            LPC++Y   EK   D  +EC VCLE  K GE+CRLLPNC H+FH +CIDSWLLK P+CP
Sbjct: 61  MLPCFDYMAGEKGSTDSPVECAVCLENIKAGEKCRLLPNCGHSFHAQCIDSWLLKTPVCP 120

Query: 121 ICRTCAAVPKI 125
           +CR+C   PKI
Sbjct: 121 VCRSCVNRPKI 131

[Close]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-13
Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 45  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDS 104
           K + K+ L   P   Y   E     LD ECV+CL  F  GE+ RLLP C+H FHV CID 
Sbjct: 107 KGIKKKALRMFPVVSYS-PEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDK 166

Query: 105 WLLKRPICPICRTC 119
           WL +   CP CR C
Sbjct: 167 WLQQHLTCPKCRNC 179

[Close]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-13
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 44  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECID 103
           R+ L  + +  LP Y Y    KQR +   +CV+CL  F+ GE  +++P+C H FHV+C+D
Sbjct: 113 RRGLDSQAVRSLPVYRYTKAAKQRNE---DCVICLSDFEEGETVKVIPHCGHVFHVDCVD 172

Query: 104 SWLLKRPICPICRT 118
           +WL     CP+CR+
Sbjct: 173 TWLSSYVTCPLCRS 183

[Close]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-13
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LSK+  E LP   YK   +  +  D +C VCL  ++  E+ + +P+C HTFH+ECID WL
Sbjct: 87  LSKDIREMLPVVIYK---ESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 146

Query: 107 LKRPICPICRTCAAVPKIGLVLEHQN 133
                CP+CR  + +PK  L L HQ+
Sbjct: 147 TSHTTCPLCR-LSLIPKPSLDLSHQS 168

[Close]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LSK+  E LP   YK  E   V+ D +C VCL  ++  E+ + +P+C HTFH+ECID WL
Sbjct: 73  LSKDIREMLPIVIYK--ESFTVN-DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 132

Query: 107 LKRPICPICRTCAAVPKIGLVLEHQN 133
                CP+CR  + +PK  + L HQ+
Sbjct: 133 TSHTTCPLCR-LSLIPKPSVDLSHQS 154

[Close]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LS + L KLPCY    E  +R      C +CL+  K GE  R LP C HTFH+ C+D WL
Sbjct: 151 LSGDSLRKLPCYIMSSEMVRR--QVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWL 210

Query: 107 LKRPICPICR 117
           ++   CPICR
Sbjct: 211 IRHGSCPICR 218

[Close]

BLAST of Sed0007300 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.2e-49
Identity = 107/135 (79.26%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCY 60
           MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLGKNLSNQDLEKLPCY 60

Query: 61  EYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT 120
           EYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+FHVECIDSWLLK PICPICRT
Sbjct: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRT 120

Query: 121 CAAVPKIGLVLEHQN 133
           CAAVPK GLVLEHQN
Sbjct: 121 CAAVPKFGLVLEHQN 133

[Close]

BLAST of Sed0007300 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.4e-48
Identity = 106/135 (78.52%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRGERGGIILWRRR--KRLSKEDLEKLPCY 60
           MVMEIVVSAVL+LV IAVLV IH+CIVG  FRGER GI  WR    K LS +DLEKLPCY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLGKNLSNQDLEKLPCY 60

Query: 61  EYKLEEKQRVD-LDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICRT 120
           EYK  EKQ  + +DLECVVCLEGFK GERCRLLPNC H+FHVECIDSWLLK PICPICRT
Sbjct: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRT 120

Query: 121 CAAVPKIGLVLEHQN 133
           CA VPK GLVLEHQN
Sbjct: 121 CAVVPKFGLVLEHQN 133

[Close]

BLAST of Sed0007300 vs. ExPASy TrEMBL
Match: A0A2P6P601 (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0193811 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.4e-31
Identity = 73/131 (55.73%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMFRG----ERGGIILWRR---RKRLSKEDLE 60
           MVMEIV+S +L+ V IAVLV IH+CIVG  F G    +  G+++ RR    KR+S E+L 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRTFNGGSNIQGVGMVVQRRSFGMKRMSIEELN 60

Query: 61  KLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICP 120
            LPC++Y   EK   D  +EC VCLE  K GE+CRLLPNC H+FH +CIDSWLLK P+CP
Sbjct: 61  MLPCFDYMAGEKGSTDSPVECAVCLENIKAGEKCRLLPNCGHSFHAQCIDSWLLKTPVCP 120

Query: 121 ICRTCAAVPKI 125
           +CR+C   PKI
Sbjct: 121 VCRSCVNRPKI 131

[Close]

BLAST of Sed0007300 vs. ExPASy TrEMBL
Match: A0A314YMI1 (RING-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_03453 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.4e-31
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 1   MVMEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR---KRLSKEDLEKLP 60
           MVMEI++S +L+ VAIAVLV IH+CIV + F RG +G  I+ R     KR++ E+L  LP
Sbjct: 1   MVMEIIISVILLFVAIAVLVVIHVCIVRITFNRGNQGVDIVPRSSIGIKRMTNEELNMLP 60

Query: 61  CYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPICR 120
           C++Y   EK    +D  C +CLE FK GERCR LPNC H+FH +CIDSWLLK P+CP+CR
Sbjct: 61  CFDYMAGEKGTSPVD--CAICLENFKAGERCRQLPNCRHSFHAQCIDSWLLKTPVCPVCR 120

Query: 121 TCAAVPKIGLVLEHQ 132
           TCA  PKI + L  Q
Sbjct: 121 TCAKTPKIEVSLGEQ 133

[Close]

BLAST of Sed0007300 vs. ExPASy TrEMBL
Match: A0A540KRN2 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.4e-31
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 3   MEIVVSAVLMLVAIAVLVAIHLCIVGVMF-RGERGGIILWRRR-----KRLSKEDLEKLP 62
           MEI++S +L+ V +AVLV IH+CI+G  F RG   G+ L +R      K++S E+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKLEEK-QRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWLLKRPICPIC 122
           C++Y  EEK    +  ++C VCLE FK GE+CRLLPNC H+FH +CIDSWLLK P+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAAVPKIGLVLEHQNG 134
           RTCA  PKI + L   +G
Sbjct: 121 RTCAKTPKIDVSLGGASG 138

[Close]

BLAST of Sed0007300 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 45  KRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDS 104
           K + K+ L   P   Y   E     LD ECV+CL  F  GE+ RLLP C+H FHV CID 
Sbjct: 107 KGIKKKALRMFPVVSYS-PEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDK 166

Query: 105 WLLKRPICPICRTC 119
           WL +   CP CR C
Sbjct: 167 WLQQHLTCPKCRNC 179

[Close]

BLAST of Sed0007300 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 44  RKRLSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECID 103
           R+ L  + +  LP Y Y    KQR +   +CV+CL  F+ GE  +++P+C H FHV+C+D
Sbjct: 113 RRGLDSQAVRSLPVYRYTKAAKQRNE---DCVICLSDFEEGETVKVIPHCGHVFHVDCVD 172

Query: 104 SWLLKRPICPICRT 118
           +WL     CP+CR+
Sbjct: 173 TWLSSYVTCPLCRS 183

[Close]

BLAST of Sed0007300 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LSK+  E LP   YK   +  +  D +C VCL  ++  E+ + +P+C HTFH+ECID WL
Sbjct: 87  LSKDIREMLPVVIYK---ESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 146

Query: 107 LKRPICPICRTCAAVPKIGLVLEHQN 133
                CP+CR  + +PK  L L HQ+
Sbjct: 147 TSHTTCPLCR-LSLIPKPSLDLSHQS 168

[Close]

BLAST of Sed0007300 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.4e-14
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LS + L KLPCY    E  +R      C +CL+  K GE  R LP C HTFH+ C+D WL
Sbjct: 151 LSGDSLRKLPCYIMSSEMVRR--QVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWL 210

Query: 107 LKRPICPICR 117
           ++   CPICR
Sbjct: 211 IRHGSCPICR 218

[Close]

BLAST of Sed0007300 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.4e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 47  LSKEDLEKLPCYEYKLEEKQRVDLDLECVVCLEGFKMGERCRLLPNCSHTFHVECIDSWL 106
           LSK+  E LP   YK  E   V+ D +C VCL  ++  E+ + +P+C HTFH+ECID WL
Sbjct: 73  LSKDIREMLPIVIYK--ESFTVN-DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 132

Query: 107 LKRPICPICRTCAAVPKIGLVLEHQN 133
                CP+CR  + +PK  + L HQ+
Sbjct: 133 TSHTTCPLCR-LSLIPKPSVDLSHQS 154

The following BLAST results are available for this feature:

BLAST of Sed0007300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994122.1	1.7e-48	79.26	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	4.9e-48	78.52	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_030475587.1	3.2e-31	61.72	RING-H2 finger protein ATL56-like [Syzygium oleosum]	[more]
TQD76870.1	7.1e-31	52.17	hypothetical protein C1H46_037576 [Malus baccata]	[more]
PRQ17332.1	7.1e-31	55.73	putative transcription factor C2H2 family [Rosa chinensis]	[more]

BLAST of Sed0007300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	5.3e-13	47.30	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9SJJ7	5.3e-13	40.54	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9SN28	5.3e-13	41.86	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9SN27	1.2e-12	43.02	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q8LBA0	1.2e-12	47.14	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]

BLAST of Sed0007300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	8.2e-49	79.26	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	2.4e-48	78.52	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A2P6P601	3.4e-31	55.73	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
A0A314YMI1	3.4e-31	55.56	RING-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=209455...	[more]
A0A540KRN2	3.4e-31	52.17	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 P...	[more]

BLAST of Sed0007300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	3.8e-14	47.30	RING/U-box superfamily protein	[more]
AT2G27940.1	3.8e-14	40.54	RING/U-box superfamily protein	[more]
AT4G10150.1	3.8e-14	41.86	RING/U-box superfamily protein	[more]
AT1G74410.1	8.4e-14	47.14	RING/U-box superfamily protein	[more]
AT4G10160.1	8.4e-14	43.02	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 74..115 e-value: 2.1E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 73..116 e-value: 1.4E-12 score: 47.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 74..116 score: 12.017182
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 40..120 e-value: 5.3E-20 score: 72.9
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..131
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..131
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 73..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007300.1	Sed0007300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane