Sed0007261 (gene) Chayote v1

Overview


Name	Sed0007261
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ROTUNDIFOLIA like 21
Location	LG06: 38532753 .. 38533439 (+)
RNA-Seq Expression	Sed0007261
Synteny	Sed0007261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAACCATTCTTCTTCTTCTTCTTGCCTACTTCCTCTTTTTTCCACTCCAAAATTTAATATTCAAAGGCCGACAAAATTTCTTGGGGGTTGAATCTCCAAATAAATGCTCTTTCATACAAAGAGAGATAGTAAAAAAAAAAAAGAAAAAAAGATACATTTCTCTTCCACTTATATAAATTAAGAGCTCTACTATTGGCTTTCACAAAAGCCCTTGGCCTTGCAAATCATAGAAAGAGAGCAAAAGGGTATTTGGTGGAAAAAGGTTAAAACAAGAAGAACACATGATGAGTAGAAACCCTAAAGTTGGAGATTCCACCATGGGAGAAGGGAAGAAGAAGAAGAAGGTTTCATGGAGATCGAGGTCATCTTATGGTGGTTATATTCGAGAGCAAAGGGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCTTGTGCTGGCATGACTGACTCCGAAGCGAGTATGATTTTTACGAGCTCGTATTAATGGAGATGTCGTTCAGTTTGAACTTTAATTTTGACAAATTTAGTTAGATTAGTGTGGAGATGTGAAATGTTGTCTCTTTAGTCTAGAAAGTCCTTAGCCATTTTGCCATCTTCATATGTAAAAAGTAGATAGACAAAAAAATGGCTTCCTTTTGTGTTTCATAGGAAGAGTAATGTTAGTTGTTTTTAGCCCAA

mRNA sequence

CAAAAAACCATTCTTCTTCTTCTTCTTGCCTACTTCCTCTTTTTTCCACTCCAAAATTTAATATTCAAAGGCCGACAAAATTTCTTGGGGGTTGAATCTCCAAATAAATGCTCTTTCATACAAAGAGAGATAGTAAAAAAAAAAAAGAAAAAAAGATACATTTCTCTTCCACTTATATAAATTAAGAGCTCTACTATTGGCTTTCACAAAAGCCCTTGGCCTTGCAAATCATAGAAAGAGAGCAAAAGGGTATTTGGTGGAAAAAGGTTAAAACAAGAAGAACACATGATGAGTAGAAACCCTAAAGTTGGAGATTCCACCATGGGAGAAGGGAAGAAGAAGAAGAAGGTTTCATGGAGATCGAGGTCATCTTATGGTGGTTATATTCGAGAGCAAAGGGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCTTGTGCTGGCATGACTGACTCCGAAGCGAGTATGATTTTTACGAGCTCGTATTAATGGAGATGTCGTTCAGTTTGAACTTTAATTTTGACAAATTTAGTTAGATTAGTGTGGAGATGTGAAATGTTGTCTCTTTAGTCTAGAAAGTCCTTAGCCATTTTGCCATCTTCATATGTAAAAAGTAGATAGACAAAAAAATGGCTTCCTTTTGTGTTTCATAGGAAGAGTAATGTTAGTTGTTTTTAGCCCAA

Coding sequence (CDS)

ATGATGAGTAGAAACCCTAAAGTTGGAGATTCCACCATGGGAGAAGGGAAGAAGAAGAAGAAGGTTTCATGGAGATCGAGGTCATCTTATGGTGGTTATATTCGAGAGCAAAGGGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCTTGTGCTGGCATGACTGA

Protein sequence

MMSRNPKVGDSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD

Homology

[Close]

BLAST of Sed0007261 vs. NCBI nr
Match: XP_038906924.1 (uncharacterized protein LOC120092787 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 2  MSRNPK-VGDSTMGEGKKK-KKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K V  +TMGEGKKK KKVSWRSRSS GGYIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTKVVTKTTMGEGKKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 57

[Close]

BLAST of Sed0007261 vs. NCBI nr
Match: XP_008461574.1 (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa] >TYK13498.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEG--KKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K   ++MGEG  KK+KKVSWRSRSS GGYIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTK---TSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of Sed0007261 vs. NCBI nr
Match: XP_011651363.1 (uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEG--KKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K   ++MG+G  KK KKVSWRSRSS GGYI+EQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTK---TSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of Sed0007261 vs. NCBI nr
Match: KAE8650571.1 (hypothetical protein Csa_009769, partial [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEG--KKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K   ++MG+G  KK KKVSWRSRSS GGYI+EQ+GRLYIIRSCIVMLLCWHD
Sbjct: 5  MSRSTK---TSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 58

[Close]

BLAST of Sed0007261 vs. NCBI nr
Match: XP_023528694.1 (uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 3.0e-12
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 13 MGEGK-----KKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MG+GK     K KKVSWRSRSS+G YIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDGKNKNKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 49

[Close]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot
Match: Q6X5U0 (Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-07
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 15 EGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          +G KKK          GGY++EQ+GRLYIIR C+VML+CWHD
Sbjct: 2  KGTKKKT---PCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 7  KVGDSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          K   S++G  K+K    W      GG +REQ+ +LYIIR C+VMLLCWHD
Sbjct: 2  KTTGSSVGGTKRK---MW--SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot
Match: Q9SAF8 (Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-05
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 13 MGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          M  G  K++V   S    G  ++EQR +LYIIR C+VMLLCWHD
Sbjct: 1  MKMGGSKRRV---SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot
Match: Q6IM95 (Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-05
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16 GKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          G  K++VS  S    GG +REQR +LYII+ C+VMLLCW D
Sbjct: 2  GVLKRRVS--SSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

[Close]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot
Match: Q6X5U1 (Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-04
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 10 DSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          +S M   +K+KK   R     G Y++EQ+GR+YIIR C++MLLC HD
Sbjct: 2  ESIMSLKRKEKKSQSR---RLGKYLKEQKGRIYIIRRCVMMLLCSHD 45

[Close]

BLAST of Sed0007261 vs. ExPASy TrEMBL
Match: A0A5D3CQM7 (ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00130 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEG--KKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K   ++MGEG  KK+KKVSWRSRSS GGYIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTK---TSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of Sed0007261 vs. ExPASy TrEMBL
Match: A0A1S3CFH9 (uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEG--KKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR+ K   ++MGEG  KK+KKVSWRSRSS GGYIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MSRSTK---TSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of Sed0007261 vs. ExPASy TrEMBL
Match: A0A6J1CQ69 (uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013296 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2  MSRNPKVGDSTMGEGKKKKKVSWR-SRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MSR    G    GEG KKKKVSWR SRSS GGYIREQ+G+LYIIRSCIVMLLCWHD
Sbjct: 1  MSRRRSSGGVAEGEG-KKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 55

[Close]

BLAST of Sed0007261 vs. ExPASy TrEMBL
Match: A0A6J1F4S9 (uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC111442169 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 13 MGEGK-------KKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          MG+GK       K KKVSWRSRSS+G YIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDGKNKNKIKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 51

[Close]

BLAST of Sed0007261 vs. ExPASy TrEMBL
Match: A0A6J1IZ09 (uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 8  VGDSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          +GD       K KKV WRSRSS+G YIREQ+GRLYIIRSCIVMLLCWHD
Sbjct: 1  MGDRKNKNKNKNKKVLWRSRSSFGSYIREQKGRLYIIRSCIVMLLCWHD 49

[Close]

BLAST of Sed0007261 vs. TAIR 10
Match: AT1G67265.1 (ROTUNDIFOLIA like 21 )

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-08
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 15 EGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          +G KKK          GGY++EQ+GRLYIIR C+VML+CWHD
Sbjct: 2  KGTKKKT---PCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of Sed0007261 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 49.7 bits (117), Expect = 9.0e-07
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 7  KVGDSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          K   S++G  K+K    W      GG +REQ+ +LYIIR C+VMLLCWHD
Sbjct: 2  KTTGSSVGGTKRK---MW--SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007261 vs. TAIR 10
Match: AT1G68825.2 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 49.7 bits (117), Expect = 9.0e-07
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 7  KVGDSTMGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          K   S++G  K+K    W      GG +REQ+ +LYIIR C+VMLLCWHD
Sbjct: 2  KTTGSSVGGTKRK---MW--SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of Sed0007261 vs. TAIR 10
Match: AT1G13245.1 (ROTUNDIFOLIA like 17 )

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-06
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 13 MGEGKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          M  G  K++V   S    G  ++EQR +LYIIR C+VMLLCWHD
Sbjct: 1  MKMGGSKRRV---SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of Sed0007261 vs. TAIR 10
Match: AT3G25717.1 (ROTUNDIFOLIA like 16 )

HSP 1 Score: 48.1 bits (113), Expect = 2.6e-06
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16 GKKKKKVSWRSRSSYGGYIREQRGRLYIIRSCIVMLLCWHD 57
          G  K++VS  S    GG +REQR +LYII+ C+VMLLCW D
Sbjct: 2  GVLKRRVS--SSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

The following BLAST results are available for this feature:

BLAST of Sed0007261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906924.1	2.2e-15	84.21	uncharacterized protein LOC120092787 [Benincasa hispida]	[more]
XP_008461574.1	7.1e-14	78.95	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROT...	[more]
XP_011651363.1	6.0e-13	75.44	uncharacterized protein LOC105434872 [Cucumis sativus]	[more]
KAE8650571.1	6.0e-13	75.44	hypothetical protein Csa_009769, partial [Cucumis sativus]	[more]
XP_023528694.1	3.0e-12	79.59	uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0007261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X5U0	8.8e-07	57.14	Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1	[more]
Q6X5T8	1.3e-05	50.00	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]
Q9SAF8	2.8e-05	52.27	Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1	[more]
Q6IM95	3.7e-05	56.10	Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1	[more]
Q6X5U1	1.4e-04	48.94	Small polypeptide DEVIL 2 OS=Arabidopsis thaliana OX=3702 GN=DVL2 PE=2 SV=1	[more]

BLAST of Sed0007261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQM7	3.5e-14	78.95	ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G...	[more]
A0A1S3CFH9	3.5e-14	78.95	uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=...	[more]
A0A6J1CQ69	1.9e-12	76.79	uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1F4S9	2.5e-12	76.47	uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1IZ09	1.6e-11	73.47	uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952...	[more]

BLAST of Sed0007261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67265.1	6.2e-08	57.14	ROTUNDIFOLIA like 21	[more]
AT1G68825.1	9.0e-07	50.00	ROTUNDIFOLIA like 15	[more]
AT1G68825.2	9.0e-07	50.00	ROTUNDIFOLIA like 15	[more]
AT1G13245.1	2.0e-06	52.27	ROTUNDIFOLIA like 17	[more]
AT3G25717.1	2.6e-06	56.10	ROTUNDIFOLIA like 16	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 35..53 e-value: 2.5E-10 score: 39.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR47855	OS01G0525701 PROTEIN	coord: 7..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007261.1	Sed0007261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane