Sed0007232 (gene) Chayote v1

Overview


Name	Sed0007232
Type	gene
Organism	Sechium edule (Chayote v1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	LG02: 44711228 .. 44713366 (+)
RNA-Seq Expression	Sed0007232
Synteny	Sed0007232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAAGTTGAGATTTCTCGATCGGAGAAGAAGAAGAAGCATAGAAACAAGGATGAACAACTGTCGCCGGCCGTCGGTTCCGACGAGCCGCCGCCGCCGCCGAAGGACGTCACCGACTTCATGATCAAGCCTCAAAGCTTCACTCCTCCGGTGGACACATCTCAATGGCCTATTCTGTTGAAAAACTACGACCGGCTCAATGTACGCACCGGCCACTACACTCCTCTCCCGTGCGGTTTCTCTCCTCTCAAGCGGCCTCTGGCCGAGTACATCAGGTACGGTATTCTCAACCTTGATAAACCAGCGAACCCTTCCTCGCATGAGGTGGTGGCTTGGATTAAACGGATCATTCGGGTCGAGAAAACGGGCCACAGCGGCACTCTCGACCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAAGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGCTGCATTCGGCTGTGCCGGATGTTGCGAAAGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGCGGCCGCCTTTGATTTCGGCTGTGAAACGACAGCTTAGGATTAGGACTATTTATGAGAGTAAGCTTTTAGAGTACGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGAACAATGTGTGTGCATTTGGGGTTGATTCTTGGTGTTGGAGGGCATATGCAGGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGAAGGGTAATTATGCCTCTCGAGGTTGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAGGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATAGCAACTTGTGATCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGACCGCGATACATACCCGAGGAAATGGGGATTGGGTCCAAGGGCATCGATGAAGAAGAAGCTTATTGGAGCAGGGAAGTTGGATAAGCATGGAAAACCAAATGAAAACACTCCTCAGGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCAATGGTTGCAAGTGTCTTTGCCACCGATACTGCCTCTACAAAGCAGATGGATGCAGTTGTTGAGGATGGAGGGCGGAAGCGAAAACACGATGAAGAAACAGAAGCAGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGCTGAAGAAGTTGGGAAGAAAGAAAAGAAAAAGAAGAAGAAGGACAAAGAGAAGGGTACTGCAGAACCTTCGGACGAAGAAAATGCTGAAAAATCCGAGAAGAAAAAGAAGAAGAAAGACAAAGATGCAAAAGAAGTAGGTACACCCGAGACTGAGAAGTCCGAGAAGAAAAAGAAGAAGAAGGACAAAGATGCGAAGGAAGCAGAAACACCCGGGCTAGAGAAGTCCGAGAAGAAAAAGAAGAAAGATAAAGAGTCTGGAAATGATACACAAAATGGTGAAGCAGATGGTCATATTAATGGGAGTGAGAAGAAAAAGAATAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAAGATACAAGATCAGATTTGACTTTATATTTGGGTAACTCTGATTGTATGACTATCTATTTCAATTTTCTAGAGTTTGCAAGTTTATTTTTATGCATTTCATGTAGAATTTTTGTTTCAACATTAAGGCTCTTTCCATTCTACCAGATCTTCTTTGCAATATTCCCTTGTGATGCTCTGTTTTCCCTAGAAGTTTTAGATAAGGCAAATCTTTGATTTTCAAGAAGATGGAGGGCTAGGAGGTATGATATTGAAGATCTATGAACACAAGGATATCAATTTTGTTTTTGTTTGTATAATTTTAGACTTGAAATCAAATTGACAAATGACATTTAGTATCTTCTTATTTCCGAA

mRNA sequence

ATGTCGGAAGTTGAGATTTCTCGATCGGAGAAGAAGAAGAAGCATAGAAACAAGGATGAACAACTGTCGCCGGCCGTCGGTTCCGACGAGCCGCCGCCGCCGCCGAAGGACGTCACCGACTTCATGATCAAGCCTCAAAGCTTCACTCCTCCGGTGGACACATCTCAATGGCCTATTCTGTTGAAAAACTACGACCGGCTCAATGTACGCACCGGCCACTACACTCCTCTCCCGTGCGGTTTCTCTCCTCTCAAGCGGCCTCTGGCCGAGTACATCAGGTACGGTATTCTCAACCTTGATAAACCAGCGAACCCTTCCTCGCATGAGGTGGTGGCTTGGATTAAACGGATCATTCGGGTCGAGAAAACGGGCCACAGCGGCACTCTCGACCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAAGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGCTGCATTCGGCTGTGCCGGATGTTGCGAAAGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGCGGCCGCCTTTGATTTCGGCTGTGAAACGACAGCTTAGGATTAGGACTATTTATGAGAGTAAGCTTTTAGAGTACGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGAACAATGTGTGTGCATTTGGGGTTGATTCTTGGTGTTGGAGGGCATATGCAGGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGAAGGGTAATTATGCCTCTCGAGGTTGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAGGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATAGCAACTTGTGATCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGACCGCGATACATACCCGAGGAAATGGGGATTGGGTCCAAGGGCATCGATGAAGAAGAAGCTTATTGGAGCAGGGAAGTTGGATAAGCATGGAAAACCAAATGAAAACACTCCTCAGGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCAATGGTTGCAAGTGTCTTTGCCACCGATACTGCCTCTACAAAGCAGATGGATGCAGTTGTTGAGGATGGAGGGCGGAAGCGAAAACACGATGAAGAAACAGAAGCAGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGCTGAAGAAGTTGGGAAGAAAGAAAAGAAAAAGAAGAAGAAGGACAAAGAGAAGGGTACTGCAGAACCTTCGGACGAAGAAAATGCTGAAAAATCCGAGAAGAAAAAGAAGAAGAAAGACAAAGATGCAAAAGAAGTAGGTACACCCGAGACTGAGAAGTCCGAGAAGAAAAAGAAGAAGAAGGACAAAGATGCGAAGGAAGCAGAAACACCCGGGCTAGAGAAGTCCGAGAAGAAAAAGAAGAAAGATAAAGAGTCTGGAAATGATACACAAAATGGTGAAGCAGATGGTCATATTAATGGGAGTGAGAAGAAAAAGAATAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAAGATACAAGATCAGATTTGACTTTATATTTGGATCTTCTTTGCAATATTCCCTTGTGATGCTCTGTTTTCCCTAGAAGTTTTAGATAAGGCAAATCTTTGATTTTCAAGAAGATGGAGGGCTAGGAGGTATGATATTGAAGATCTATGAACACAAGGATATCAATTTTGTTTTTGTTTGTATAATTTTAGACTTGAAATCAAATTGACAAATGACATTTAGTATCTTCTTATTTCCGAA

Coding sequence (CDS)

ATGTCGGAAGTTGAGATTTCTCGATCGGAGAAGAAGAAGAAGCATAGAAACAAGGATGAACAACTGTCGCCGGCCGTCGGTTCCGACGAGCCGCCGCCGCCGCCGAAGGACGTCACCGACTTCATGATCAAGCCTCAAAGCTTCACTCCTCCGGTGGACACATCTCAATGGCCTATTCTGTTGAAAAACTACGACCGGCTCAATGTACGCACCGGCCACTACACTCCTCTCCCGTGCGGTTTCTCTCCTCTCAAGCGGCCTCTGGCCGAGTACATCAGGTACGGTATTCTCAACCTTGATAAACCAGCGAACCCTTCCTCGCATGAGGTGGTGGCTTGGATTAAACGGATCATTCGGGTCGAGAAAACGGGCCACAGCGGCACTCTCGACCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAAGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGCTGCATTCGGCTGTGCCGGATGTTGCGAAAGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGCGGCCGCCTTTGATTTCGGCTGTGAAACGACAGCTTAGGATTAGGACTATTTATGAGAGTAAGCTTTTAGAGTACGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGAACAATGTGTGTGCATTTGGGGTTGATTCTTGGTGTTGGAGGGCATATGCAGGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGAAGGGTAATTATGCCTCTCGAGGTTGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAGGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATAGCAACTTGTGATCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGACCGCGATACATACCCGAGGAAATGGGGATTGGGTCCAAGGGCATCGATGAAGAAGAAGCTTATTGGAGCAGGGAAGTTGGATAAGCATGGAAAACCAAATGAAAACACTCCTCAGGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCAATGGTTGCAAGTGTCTTTGCCACCGATACTGCCTCTACAAAGCAGATGGATGCAGTTGTTGAGGATGGAGGGCGGAAGCGAAAACACGATGAAGAAACAGAAGCAGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGCTGAAGAAGTTGGGAAGAAAGAAAAGAAAAAGAAGAAGAAGGACAAAGAGAAGGGTACTGCAGAACCTTCGGACGAAGAAAATGCTGAAAAATCCGAGAAGAAAAAGAAGAAGAAAGACAAAGATGCAAAAGAAGTAGGTACACCCGAGACTGAGAAGTCCGAGAAGAAAAAGAAGAAGAAGGACAAAGATGCGAAGGAAGCAGAAACACCCGGGCTAGAGAAGTCCGAGAAGAAAAAGAAGAAAGATAAAGAGTCTGGAAATGATACACAAAATGGTGAAGCAGATGGTCATATTAATGGGAGTGAGAAGAAAAAGAATAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

Protein sequence

MSEVEISRSEKKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVIATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRNLVLPTGGDSMVASVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAEEVGKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSEKKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHINGSEKKKNKKKKNKEDAEE

Homology

[Close]

BLAST of Sed0007232 vs. NCBI nr
Match: XP_022941699.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411.1 H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 964.5 bits (2492), Expect = 4.1e-277
Identity = 530/605 (87.60%), Postives = 553/605 (91.40%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS+VEISRSE KKKKHR+KDE++SP VGSDE   P KDV DF+IKPQSFTPPVDTSQWPI
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDE--QPLKDVADFLIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVE--DG-GRKRKHDEETE-AAPAKKLKAEKT 480
           NLVLPTGGDS+VASVFA+DTA+ KQ  A  E  DG GRKRKHDEETE AAPAKKLK EK 
Sbjct: 421 NLVLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKV 480

Query: 481 EEAEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAK-EVGTPETEKS 540
           EEAEE+   GKKEKKKKKKDKEKG  E SD+E AEKSEKKKKKKDKDAK E GTPETEKS
Sbjct: 481 EEAEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKS 540

Query: 541 EKKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHIN-GSEKKKNKKKKNK 596
           EKK                    KKKKKDKESGNDTQNGEA+GH++ GSEKKK KKKKNK
Sbjct: 541 EKK--------------------KKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNK 583

[Close]

BLAST of Sed0007232 vs. NCBI nr
Match: KAG7027955.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 963.0 bits (2488), Expect = 1.2e-276
Identity = 529/605 (87.44%), Postives = 552/605 (91.24%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS+VEISRSE KKKKHR+KDE++SP VGSDE   P KDV DF+IKPQSFTPPVDTSQWPI
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDE--QPLKDVADFLIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVE--DG-GRKRKHDEETE-AAPAKKLKAEKT 480
           NLVLPTGGDS+VASVFA+DT + KQ  A  E  DG GRKRKHDEETE AAPAKKLK EK 
Sbjct: 421 NLVLPTGGDSLVASVFASDTTTPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKV 480

Query: 481 EEAEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAK-EVGTPETEKS 540
           EEAEE+   GKKEKKKKKKDKEKG  E SD+E AEKSEKKKKKKDKDAK E GTPETEKS
Sbjct: 481 EEAEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKS 540

Query: 541 EKKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHIN-GSEKKKNKKKKNK 596
           EKK                    KKKKKDKESGNDTQNGEA+GH++ GSEKKK KKKKNK
Sbjct: 541 EKK--------------------KKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNK 583

[Close]

BLAST of Sed0007232 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 959.1 bits (2478), Expect = 1.7e-275
Identity = 522/606 (86.14%), Postives = 542/606 (89.44%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MSEVEISRSE KKKKHR+KDE +SPAVGSDE   P KD  DFMIKPQSFTPPVDTSQWPI
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDE--QPQKDAADFMIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP G+SPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHS+VPDVAKV+RALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAE 480
           NLVLPTGGDS+VAS FA D A   + +   + GGRKRK DE+ EAAP KKLK EK EEAE
Sbjct: 421 NLVLPTGGDSLVASHFAADAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAE 480

Query: 481 ---EVGKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSEKKKK 540
              EVGKKEKKKKKKDKEKG  EP+DEEN EKSEKKKKKKDK+AKE GTPETEKSEK   
Sbjct: 481 EVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEK--- 540

Query: 541 KKDKDAKEAETPGLEKSEKKKKKDKESGND-------TQNGEADGHINGSEKKKNKKKKN 596
                             KKKKKDKESGND        QNGEADGH++GSEKKK KKKKN
Sbjct: 541 ------------------KKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKN 582

[Close]

BLAST of Sed0007232 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 956.1 bits (2470), Expect = 1.5e-274
Identity = 520/603 (86.24%), Postives = 547/603 (90.71%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS VEISRSE KKKKHR+KD+++SPAVGSDE   PPKDV DFMIKPQSFTPPVDTSQWPI
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDE--QPPKDVADFMIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KVARALE
Sbjct: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNE TP EW+R
Sbjct: 361 MATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQ--MDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEE 480
           NLVLPTGGDS+VASVFA+D+A+  +   +   + GGRKRK DEETEAAPAKKLKAEKTE+
Sbjct: 421 NLVLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTED 480

Query: 481 AEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTP-ETEKSEK 540
           AEEV   GKKEKKKKKKDKEKG+ EPSDEEN  + EKKKKKKDK+ KE GTP ET+KSEK
Sbjct: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEK 540

Query: 541 KKKKKDKDAKEAETPGLEKSEKKKKKDKESG-NDTQNGEADGHINGSEKKKNKKKKNKED 596
                                KKKKKDKESG  D QNGEAD H++GSEKKK KKKKNKED
Sbjct: 541 ---------------------KKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKED 580

[Close]

BLAST of Sed0007232 vs. NCBI nr
Match: XP_022971402.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 955.7 bits (2469), Expect = 1.9e-274
Identity = 523/601 (87.02%), Postives = 545/601 (90.68%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS+VEISRSE KKKKHR+KDE++SP V SDE   P KDV DF+IKPQSFTPPVDTSQWPI
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDE--QPLKDVADFLIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVE--DG-GRKRKHDEETE-AAPAKKLKAEKT 480
           NLVLPTGGDS+VASVFA+DTA+ KQ  A  E  DG G+KRKHDEETE AAPAKKLK EK 
Sbjct: 421 NLVLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKA 480

Query: 481 EEAEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSE 540
           EEAEEV   GKKEKKKKKKDKEKG  E SD+E AEK EKKKKKKDKDAKE GTPETEKSE
Sbjct: 481 EEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSE 540

Query: 541 KKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHINGSEKKKNKKKKNKED 594
           KK                    KKKKKDKESGNDTQNGEADGH++G  +   KKKKNKE+
Sbjct: 541 KK--------------------KKKKKDKESGNDTQNGEADGHVDGGSE---KKKKNKEE 576

[Close]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 6.7e-222
Identity = 437/610 (71.64%), Postives = 489/610 (80.16%), Query Frame = 0


Query: 1   MSEVEISRSEKKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPIL 60
           M+EV+IS S+KKK+ + +++                D  D+MIKPQSFTP +DTSQWPIL
Sbjct: 1   MAEVDISHSKKKKQDKTEND--------------AADTGDYMIKPQSFTPAIDTSQWPIL 60

Query: 61  LKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRV 120
           LKNYDRLNVRTGHYTP+  G SPLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRI+RV
Sbjct: 61  LKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRV 120

Query: 121 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALET 180
           EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE+
Sbjct: 121 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALES 180

Query: 181 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGL 240
           LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RTMCVHLGL
Sbjct: 181 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGL 240

Query: 241 ILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTS 300
           +LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTS
Sbjct: 241 LLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTS 300

Query: 301 YKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVI 360
           YKRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTT+V+
Sbjct: 301 YKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVM 360

Query: 361 ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRN 420
           ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI  GKLDKHGKPNE TP EW RN
Sbjct: 361 ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRN 420

Query: 421 LVLPTGGDSMVASVFATDTASTKQMDAVVEDG----GRKRKHDEETEAAPAKKLKAEKT- 480
           +VLPTGGD+++A       A+ +++ A  E+G     RKRKHD+ +++      K  KT 
Sbjct: 421 VVLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTK 480

Query: 481 ----EEAEEVGKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKK--KKDKDAKEVGTPETE 540
               EEAEE  K  KKKKKKDKE+   E  +E  +EK EKKKK  KK++  +EV +P   
Sbjct: 481 EVEGEEAEEKVKSSKKKKKKDKEE---EKEEEAGSEKKEKKKKKDKKEEVIEEVASP--- 540

Query: 541 KSEKKKKKKDKDAKEA----ETPGLEKSEKKKKKDKESGNDTQNGEADGHINGSEKKKNK 596
           KSEKKKKKK KD + A    +    EKSEKKKKK                     K K K
Sbjct: 541 KSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKK---------------------KDKKK 565

[Close]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 1.4e-174
Identity = 333/514 (64.79%), Postives = 401/514 (78.02%), Query Frame = 0


Query: 13  KKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTG 72
           KK R KD++  P    DE     +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T 
Sbjct: 10  KKRRKKDKRSLP----DEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTT 69

Query: 73  HYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPK 132
           HYTPLP G +PLKR +++Y+R G +NLDKP+NPSSHEVVAWI+RI+RVEKTGHSGTLDPK
Sbjct: 70  HYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPK 129

Query: 133 VTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLI 192
           VTG LIVCI+RATRLVKSQQ AGKEYV I RLH+A+   A++ARA+ETLTGA+FQRPPLI
Sbjct: 130 VTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLI 189

Query: 193 SAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 252
           +AVKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELR
Sbjct: 190 AAVKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELR 249

Query: 253 RVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVN 312
           RVRSGILGE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVN
Sbjct: 250 RVRSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVN 309

Query: 313 AICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVIATCDHGVVAKIK 372
           AICYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAI L IA MTTAVI+TCDHGVVAKIK
Sbjct: 310 AICYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIK 369

Query: 373 RVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRNLVLPTGGDSMVA 432
           RV+M+RDTYPRKWGLGP+AS KK +I  G LDKHGKPNE TP  W +  V     D   +
Sbjct: 370 RVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRES 429

Query: 433 SVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAEEVGKKEKKKKKKD 492
           S    + A   Q  + VE    KRK + E+E        +  T   EE+ KKEKKKKKK+
Sbjct: 430 S--KKEAAKVPQAVSEVE-RAPKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKE 489

Query: 493 KEKGTAEPSDEENAE---KSEKKKKKKDKDAKEV 524
           K+   A  S EE  E   +S  KKKKK K  KEV
Sbjct: 490 KKAKEAAESGEEQVEVISESSAKKKKKKKKQKEV 511

[Close]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 605.9 bits (1561), Expect = 4.9e-172
Identity = 317/517 (61.32%), Postives = 400/517 (77.37%), Query Frame = 0


Query: 13  KKHRNKDEQLSPAVGSDEPPPPPKDVT------DFMIKPQSFTPPVDTSQWPILLKNYDR 72
           KKH+ K E+          P P  DV       DF+IKP+S    +DTSQWP+LLKN+DR
Sbjct: 12  KKHKKKKER---------KPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDR 71

Query: 73  LNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRVEKTGHS 132
           LNVRT HYTP+PCG +PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RI+RVEKTGHS
Sbjct: 72  LNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHS 131

Query: 133 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVF 192
           GTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   A+++RALETLTGA+F
Sbjct: 132 GTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALF 191

Query: 193 QRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGG 252
           QRPPLI+AVKRQLR+RTIYES+++EYD ++ L VFW+SCEAGTY+RT+CVHLGL+LGVGG
Sbjct: 192 QRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGG 251

Query: 253 HMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVV 312
            MQELRRVRSG++GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+KRLV+
Sbjct: 252 QMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVM 311

Query: 313 KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVIATCDHG 372
           KDSAVNAICYGAK+M+PGLLR+E+ IEV +EVV++TTKGEA+ + IA MTTAVI+TCDHG
Sbjct: 312 KDSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHG 371

Query: 373 VVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRNLVLPTG 432
           VVAKIKRV+M+RDTYPRKWGLGP+AS KK+LI  G LDKHG+P + TP  W R+ V  + 
Sbjct: 372 VVAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYVDYSD 431

Query: 433 GDSMVASVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAEEVGKKEK 492
                 +  AT         A +     KRK D +++A  A      +         K++
Sbjct: 432 SSKKATAAEATPGPGVTADAASIV----KRKRDSDSDADEATPTTTPRV--------KKE 491

Query: 493 KKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEV 524
           KKKKK+K  G  E +++ + + + KKKKKK + A+E+
Sbjct: 492 KKKKKEKADGGEEAAEDGDGDATRKKKKKKARAAEEL 507

[Close]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 604.0 bits (1556), Expect = 1.9e-171
Identity = 318/516 (61.63%), Postives = 400/516 (77.52%), Query Frame = 0


Query: 13  KKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTG 72
           KKH+ K E+ S     +E     +   +F+IKP+S    +DTSQWP+LLKN+D+LNVRT 
Sbjct: 11  KKHKKKKERKSL---PEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTT 70

Query: 73  HYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPK 132
           HYTPL CG +PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RI+RVEKTGHSGTLDPK
Sbjct: 71  HYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPK 130

Query: 133 VTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLI 192
           VTG LIVCI+RATRLVKSQQ AGKEYV I RLH+A+    +++RALETLTGA+FQRPPLI
Sbjct: 131 VTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLI 190

Query: 193 SAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 252
           +AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELR
Sbjct: 191 AAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELR 250

Query: 253 RVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVN 312
           RVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVN
Sbjct: 251 RVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVN 310

Query: 313 AICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVIATCDHGVVAKIK 372
           AICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAI + IA MTTAVI+TCDHG+VAKIK
Sbjct: 311 AICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIK 370

Query: 373 RVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRNLVLPTGGDSMVA 432
           RV+M+RDTYPRKWGLGP+AS KK +I  G LDKHGKP ++TP  W +  V     +S   
Sbjct: 371 RVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYV--DYSESAKK 430

Query: 433 SVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAEEVGKKEKKKKKKD 492
            V A    + + +    +   RKR+ + E++  P           A ++ KKEKKK KKD
Sbjct: 431 EVVAEVVKAPQVVAEAAKTAKRKRESESESDETP---------PAAPQLIKKEKKKSKKD 490

Query: 493 KE-----KGTAEPSDEENAEKSEKKKKKKDKDAKEV 524
           K+     +  AEP D ++    +KKKKKK K+ + V
Sbjct: 491 KKAKAGLESGAEPGDGDSDTTKKKKKKKKAKEVELV 512

[Close]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 600.5 bits (1547), Expect = 2.0e-170
Identity = 317/530 (59.81%), Postives = 407/530 (76.79%), Query Frame = 0


Query: 1   MSEVEISRSEKKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPIL 60
           M++ E+    KK K +   + L      ++     +   +F+IKP+S    +DTSQWP+L
Sbjct: 1   MADAEVITFPKKHKKKKDRKPL-----QEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLL 60

Query: 61  LKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRV 120
           LKN+D+LNVRT HYTPLPCG +PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RI+RV
Sbjct: 61  LKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRV 120

Query: 121 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALET 180
           EKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV I RLH+A+    +++RALET
Sbjct: 121 EKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALET 180

Query: 181 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGL 240
           LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RT+CVHLGL
Sbjct: 181 LTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGL 240

Query: 241 ILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTS 300
           +LGVGG MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS
Sbjct: 241 LLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTS 300

Query: 301 YKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVI 360
           +KRLV+KDSAVNAICYGAK+M+PGLLR+E+ IEV +E+V++TTKGEAI + IA MTTAVI
Sbjct: 301 HKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVI 360

Query: 361 ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRN 420
           +TCDHG+VAKIKRV+M+RDTYPRKWGLGP+AS KK +I  G LDKHGKP +NTP  W ++
Sbjct: 361 STCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQD 420

Query: 421 LV--LPTGGDSMVASVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEA 480
            +    +G +++V         + + ++ +      KRK D E+E           ++E 
Sbjct: 421 YIDYSDSGKNTLVTEAVQAPQLAAEAVNVI------KRKRDSESE-----------SDET 480

Query: 481 EEVGKKEKKKKKKDKEKGT-----AEPSDEENAEKSEKKKKKKDKDAKEV 524
             V + ++KKKKKDK+  T      E  D +N + ++KKKKKK K  +E+
Sbjct: 481 PTVPQLKEKKKKKDKKPKTVLESGGETGDGDN-DTTKKKKKKKVKVVEEM 507

[Close]

BLAST of Sed0007232 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 964.5 bits (2492), Expect = 2.0e-277
Identity = 530/605 (87.60%), Postives = 553/605 (91.40%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS+VEISRSE KKKKHR+KDE++SP VGSDE   P KDV DF+IKPQSFTPPVDTSQWPI
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDE--QPLKDVADFLIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVE--DG-GRKRKHDEETE-AAPAKKLKAEKT 480
           NLVLPTGGDS+VASVFA+DTA+ KQ  A  E  DG GRKRKHDEETE AAPAKKLK EK 
Sbjct: 421 NLVLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKV 480

Query: 481 EEAEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAK-EVGTPETEKS 540
           EEAEE+   GKKEKKKKKKDKEKG  E SD+E AEKSEKKKKKKDKDAK E GTPETEKS
Sbjct: 481 EEAEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKS 540

Query: 541 EKKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHIN-GSEKKKNKKKKNK 596
           EKK                    KKKKKDKESGNDTQNGEA+GH++ GSEKKK KKKKNK
Sbjct: 541 EKK--------------------KKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNK 583

[Close]

BLAST of Sed0007232 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 959.1 bits (2478), Expect = 8.4e-276
Identity = 522/606 (86.14%), Postives = 542/606 (89.44%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MSEVEISRSE KKKKHR+KDE +SPAVGSDE   P KD  DFMIKPQSFTPPVDTSQWPI
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDE--QPQKDAADFMIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP G+SPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHS+VPDVAKV+RALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEEAE 480
           NLVLPTGGDS+VAS FA D A   + +   + GGRKRK DE+ EAAP KKLK EK EEAE
Sbjct: 421 NLVLPTGGDSLVASHFAADAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAE 480

Query: 481 ---EVGKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSEKKKK 540
              EVGKKEKKKKKKDKEKG  EP+DEEN EKSEKKKKKKDK+AKE GTPETEKSEK   
Sbjct: 481 EVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEK--- 540

Query: 541 KKDKDAKEAETPGLEKSEKKKKKDKESGND-------TQNGEADGHINGSEKKKNKKKKN 596
                             KKKKKDKESGND        QNGEADGH++GSEKKK KKKKN
Sbjct: 541 ------------------KKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKN 582

[Close]

BLAST of Sed0007232 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 956.1 bits (2470), Expect = 7.1e-275
Identity = 520/603 (86.24%), Postives = 547/603 (90.71%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS VEISRSE KKKKHR+KD+++SPAVGSDE   PPKDV DFMIKPQSFTPPVDTSQWPI
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDE--QPPKDVADFMIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KVARALE
Sbjct: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNE TP EW+R
Sbjct: 361 MATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQ--MDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEE 480
           NLVLPTGGDS+VASVFA+D+A+  +   +   + GGRKRK DEETEAAPAKKLKAEKTE+
Sbjct: 421 NLVLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTED 480

Query: 481 AEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTP-ETEKSEK 540
           AEEV   GKKEKKKKKKDKEKG+ EPSDEEN  + EKKKKKKDK+ KE GTP ET+KSEK
Sbjct: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEK 540

Query: 541 KKKKKDKDAKEAETPGLEKSEKKKKKDKESG-NDTQNGEADGHINGSEKKKNKKKKNKED 596
                                KKKKKDKESG  D QNGEAD H++GSEKKK KKKKNKED
Sbjct: 541 ---------------------KKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKED 580

[Close]

BLAST of Sed0007232 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 955.7 bits (2469), Expect = 9.3e-275
Identity = 523/601 (87.02%), Postives = 545/601 (90.68%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS+VEISRSE KKKKHR+KDE++SP V SDE   P KDV DF+IKPQSFTPPVDTSQWPI
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDE--QPLKDVADFLIKPQSFTPPVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           V+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE
Sbjct: 121 VDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNENTPQEWLR
Sbjct: 361 MATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQMDAVVE--DG-GRKRKHDEETE-AAPAKKLKAEKT 480
           NLVLPTGGDS+VASVFA+DTA+ KQ  A  E  DG G+KRKHDEETE AAPAKKLK EK 
Sbjct: 421 NLVLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKA 480

Query: 481 EEAEEV---GKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSE 540
           EEAEEV   GKKEKKKKKKDKEKG  E SD+E AEK EKKKKKKDKDAKE GTPETEKSE
Sbjct: 481 EEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSE 540

Query: 541 KKKKKKDKDAKEAETPGLEKSEKKKKKDKESGNDTQNGEADGHINGSEKKKNKKKKNKED 594
           KK                    KKKKKDKESGNDTQNGEADGH++G  +   KKKKNKE+
Sbjct: 541 KK--------------------KKKKKDKESGNDTQNGEADGHVDGGSE---KKKKNKEE 576

[Close]

BLAST of Sed0007232 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 945.7 bits (2443), Expect = 9.6e-272
Identity = 520/603 (86.24%), Postives = 547/603 (90.71%), Query Frame = 0


Query: 1   MSEVEISRSE-KKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPI 60
           MS VEISRSE KKKKHR+KD+++SPAVGSDE   PPKDV DFMIKPQSFTP VDTSQWPI
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDE--QPPKDVADFMIKPQSFTPSVDTSQWPI 60

Query: 61  LLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIR 120
           LLKNYDRLNVRTGHYTPLP GFSPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRI+R
Sbjct: 61  LLKNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILR 120

Query: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALE 180
           VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KVARALE
Sbjct: 121 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALE 180

Query: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLG 240
           TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRT+CVHLG
Sbjct: 181 TLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLG 240

Query: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300
           LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT
Sbjct: 241 LILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLT 300

Query: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAV 360
           SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+V
Sbjct: 301 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSV 360

Query: 361 IATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLR 420
           +ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG GKLDKHGKPNE TP EW+R
Sbjct: 361 MATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMR 420

Query: 421 NLVLPTGGDSMVASVFATDTASTKQ--MDAVVEDGGRKRKHDEETEAAPAKKLKAEKTEE 480
           NLVLPTGGDS+VASVFATD+A+  +   +   + GGRKRK DEETEAAPAKKLKAEKTE+
Sbjct: 421 NLVLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTED 480

Query: 481 AEEV---GKKE-KKKKKKDKEKGTAEPSDEENAEKSEKKKKKKDKDAKEVGTPETEKSEK 540
           AEEV   GKKE KKKKKKDKEKG+ EPSDEEN E+SE KKKKKDK+ KE GTPE    EK
Sbjct: 481 AEEVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSE-KKKKKDKEGKEAGTPE----EK 540

Query: 541 KKKKKDKDAKEAETPGLEKSEKKKKKDKESG-NDTQNGEADGHINGSEKKKNKKKKNKED 596
           +K +K                KKKKKDKESG  D QNGEAD H++GSEKKK KKKKNKED
Sbjct: 541 QKSEK----------------KKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKED 580

[Close]

BLAST of Sed0007232 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 771.5 bits (1991), Expect = 4.8e-223
Identity = 437/610 (71.64%), Postives = 489/610 (80.16%), Query Frame = 0


Query: 1   MSEVEISRSEKKKKHRNKDEQLSPAVGSDEPPPPPKDVTDFMIKPQSFTPPVDTSQWPIL 60
           M+EV+IS S+KKK+ + +++                D  D+MIKPQSFTP +DTSQWPIL
Sbjct: 1   MAEVDISHSKKKKQDKTEND--------------AADTGDYMIKPQSFTPAIDTSQWPIL 60

Query: 61  LKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRIIRV 120
           LKNYDRLNVRTGHYTP+  G SPLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRI+RV
Sbjct: 61  LKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRV 120

Query: 121 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALET 180
           EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE+
Sbjct: 121 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALES 180

Query: 181 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGL 240
           LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RTMCVHLGL
Sbjct: 181 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGL 240

Query: 241 ILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTS 300
           +LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTS
Sbjct: 241 LLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTS 300

Query: 301 YKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVI 360
           YKRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTT+V+
Sbjct: 301 YKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVM 360

Query: 361 ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGAGKLDKHGKPNENTPQEWLRN 420
           ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI  GKLDKHGKPNE TP EW RN
Sbjct: 361 ATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRN 420

Query: 421 LVLPTGGDSMVASVFATDTASTKQMDAVVEDG----GRKRKHDEETEAAPAKKLKAEKT- 480
           +VLPTGGD+++A       A+ +++ A  E+G     RKRKHD+ +++      K  KT 
Sbjct: 421 VVLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTK 480

Query: 481 ----EEAEEVGKKEKKKKKKDKEKGTAEPSDEENAEKSEKKKK--KKDKDAKEVGTPETE 540
               EEAEE  K  KKKKKKDKE+   E  +E  +EK EKKKK  KK++  +EV +P   
Sbjct: 481 EVEGEEAEEKVKSSKKKKKKDKEE---EKEEEAGSEKKEKKKKKDKKEEVIEEVASP--- 540

Query: 541 KSEKKKKKKDKDAKEA----ETPGLEKSEKKKKKDKESGNDTQNGEADGHINGSEKKKNK 596
           KSEKKKKKK KD + A    +    EKSEKKKKK                     K K K
Sbjct: 541 KSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKK---------------------KDKKK 565

[Close]

BLAST of Sed0007232 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 96.7 bits (239), Expect = 6.8e-20
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 0


Query: 96  ILNLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 155
           +L ++KP   +S  V   ++R+++V+K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 156 KEYVCIARLHSAV-------PDVAK----------VARALETLTGAVFQRPPLISAVK-- 215
           K Y  + RL  A        P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 216 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTMCVHLGLI 264
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R++C  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of Sed0007232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941699.1	4.1e-277	87.60	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411....	[more]
KAG7027955.1	1.2e-276	87.44	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022145634.1	1.7e-275	86.14	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]
XP_022934839.1	1.5e-274	86.24	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]
XP_022971402.1	1.9e-274	87.02	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]

BLAST of Sed0007232 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	6.7e-222	71.64	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	1.4e-174	64.79	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
P40615	4.9e-172	61.32	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
O60832	1.9e-171	61.63	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]
Q9ESX5	2.0e-170	59.81	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]

BLAST of Sed0007232 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP65	2.0e-277	87.60	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CVU2	8.4e-276	86.14	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	7.1e-275	86.24	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	9.3e-275	87.02	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1J6M3	9.6e-272	86.24	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Sed0007232 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	4.8e-223	71.64	homologue of NAP57	[more]
AT5G14460.1	6.8e-20	30.69	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 576..595
None	No IPR available	COILS	Coil	Coil	coord: 467..487
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 87..293 e-value: 1.4E-181 score: 604.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 575..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..568
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 8..544
None	No IPR available	PROSITE	PS50890	PUA	coord: 301..376 score: 18.928076
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 93..275 e-value: 8.27562E-134 score: 386.232
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 53..111 e-value: 1.8E-34 score: 130.5
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 54..111 e-value: 2.5E-31 score: 107.5
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 302..376 e-value: 1.5E-23 score: 94.3
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 302..374 e-value: 4.3E-21 score: 74.7
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 232..298 e-value: 6.0E-22 score: 77.6
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 61..386 e-value: 2.3E-161 score: 534.2
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 8..544
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 298..373 e-value: 2.0E-8 score: 32.4
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 115..231 e-value: 4.6E-19 score: 69.3
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 54..385 e-value: 1.4E-181 score: 604.8
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 301..382
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 54..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007232.1	Sed0007232.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding