Sed0007104 (gene) Chayote v1

Overview
NameSed0007104
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDYW_deaminase domain-containing protein
LocationLG06: 3637908 .. 3638568 (+)
RNA-Seq ExpressionSed0007104
SyntenySed0007104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGATGTCTGTAATTTCATGTGGATAACATAATGCTGCCATTCCCGTGATGTTTCCAATCACCATTCCAACAGTCACCCACTCCAAAAAAAAAAAAAACTTGCTCTTTTAACTTGTTTATCCTCTGCATTTTAGGATATAATCTGTTTCTCTTCTTCATTGGGTTGCTAAAGCTTTCCTTACAGAGCTCTCTCTGACATCAATGGCTGCGGTTGTTGCCAGTGACACGGCCGCGGTTCTTGCTTTGTCTCTAGTTGTCTTCTTTGCCTTATCTCGAGCACCCGGCTCTGCCGGAGTTCAGCTTTCTCCAACCCCAGCTGTTTCATCTCACAGAACTTCACAAAATATGTCTTCCTTTTTCCCTTCTCCAGTTGATGAATGGTCTTCTCCCATTTCTGCAGCGCCACAGTCGCCGGTGCCGGTCTCGGGCGAGTTCGTGGGGAGGAGTGGGTTCAGCTCTGTGAAGCTCAGTTATGGCATTTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTAGTTTAAGAATGTTTCTTGGTGTTTGATTGGTTTACAGTGATGCTTTAGCCTTTTCTTGTACTTTGGATTGAGGATTTCATGTGTTTGATTTCTGTGAACTGAGATTTCTTCTCTTGGTTGAAATAAATGGTGATTTCCATTTGAAA

mRNA sequence

AAACGATGTCTGTAATTTCATGTGGATAACATAATGCTGCCATTCCCGTGATGTTTCCAATCACCATTCCAACAGTCACCCACTCCAAAAAAAAAAAAAACTTGCTCTTTTAACTTGTTTATCCTCTGCATTTTAGGATATAATCTGTTTCTCTTCTTCATTGGGTTGCTAAAGCTTTCCTTACAGAGCTCTCTCTGACATCAATGGCTGCGGTTGTTGCCAGTGACACGGCCGCGGTTCTTGCTTTGTCTCTAGTTGTCTTCTTTGCCTTATCTCGAGCACCCGGCTCTGCCGGAGTTCAGCTTTCTCCAACCCCAGCTGTTTCATCTCACAGAACTTCACAAAATATGTCTTCCTTTTTCCCTTCTCCAGTTGATGAATGGTCTTCTCCCATTTCTGCAGCGCCACAGTCGCCGGTGCCGGTCTCGGGCGAGTTCGTGGGGAGGAGTGGGTTCAGCTCTGTGAAGCTCAGTTATGGCATTTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTAGTTTAAGAATGTTTCTTGGTGTTTGATTGGTTTACAGTGATGCTTTAGCCTTTTCTTGTACTTTGGATTGAGGATTTCATGTGTTTGATTTCTGTGAACTGAGATTTCTTCTCTTGGTTGAAATAAATGGTGATTTCCATTTGAAA

Coding sequence (CDS)

ATGGCTGCGGTTGTTGCCAGTGACACGGCCGCGGTTCTTGCTTTGTCTCTAGTTGTCTTCTTTGCCTTATCTCGAGCACCCGGCTCTGCCGGAGTTCAGCTTTCTCCAACCCCAGCTGTTTCATCTCACAGAACTTCACAAAATATGTCTTCCTTTTTCCCTTCTCCAGTTGATGAATGGTCTTCTCCCATTTCTGCAGCGCCACAGTCGCCGGTGCCGGTCTCGGGCGAGTTCGTGGGGAGGAGTGGGTTCAGCTCTGTGAAGCTCAGTTATGGCATTTCAGCTTTTGGTCTGAGCATTTGTACTTTTTTAGTTTAA

Protein sequence

MAAVVASDTAAVLALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSPISAAPQSPVPVSGEFVGRSGFSSVKLSYGISAFGLSICTFLV
Homology
BLAST of Sed0007104 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-15
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 13  LALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSPISAAPQSPV 72
           +ALSL  FFA+S A  SA   +S +P V  HR SQNMSSFFPSPVD  SSPISAAP    
Sbjct: 11  VALSLAAFFAVSPAAVSA---ISASPPVPPHRASQNMSSFFPSPVDGRSSPISAAPAPAT 70

Query: 73  PV-SGEFVG-RSGFSSVKLSYGISAFGLSICT 103
            + SGEF+G RSG +SVKL++GISAFGLSIC+
Sbjct: 71  ALESGEFIGKRSGSNSVKLNHGISAFGLSICS 99

BLAST of Sed0007104 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-14
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 2   AAVVASDTAAVLALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWS 61
           AA  A+ +   +ALSL   FALS +  SA   +S +P V  HR SQNMSSFFPSPVD  S
Sbjct: 5   AAAAAAASFFCVALSLATLFALSPSAVSA---ISASPPVPPHRASQNMSSFFPSPVDGRS 64

Query: 62  SPISAAPQSPVPVSGEFVG-RSGFSSVKLSYGISAFGLSICT 103
           SPISAAP      SGEF+G RSG +SVKL++GISAFGLSIC+
Sbjct: 65  SPISAAPALE---SGEFIGKRSGSNSVKLNHGISAFGLSICS 100

BLAST of Sed0007104 vs. NCBI nr
Match: KAF3966928.1 (hypothetical protein CMV_009015 [Castanea mollissima])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 5   VASDTAAVLALSLVVFFALSRAPGSAG-VQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSP 64
           +A+ T +  ALS+V+ FA+  AP S     +S +PAVS H T  NMSSFF SP  +    
Sbjct: 1   MATLTKSCAALSMVICFAILHAPSSTSEPTISASPAVSPHVTPPNMSSFFHSPSAQRPLS 60

Query: 65  ISAAPQS----PVPVSGEFVGRSGFSSVKLSYGISAFGLS-ICTFL 105
            +AAP S    P+P SGEFVGRS  +S +L  GI+ FG+  +C F+
Sbjct: 61  SAAAPHSKAITPLPSSGEFVGRSSPNSARLDSGITIFGVGLVCLFV 106

BLAST of Sed0007104 vs. NCBI nr
Match: XP_015570786.1 (uncharacterized protein LOC107260786 [Ricinus communis])

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-07
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 10 AAVLALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEW-SSPISAAP 69
          +A  ALS  +FF+   A  S  V  S +P VS + T+ NMSSFFPSP +EW + P  A  
Sbjct: 8  SAAFALSTAIFFSDVLAVDSKPV-TSASPGVSPYVTAPNMSSFFPSPTNEWLTDPPKAEA 67

Query: 70 QSPVPVSGEFVGRSGFSSVKLSY 92
           +P+P SGEF+G+S  SSVKLSY
Sbjct: 68 LAPIPSSGEFIGKSSSSSVKLSY 89

BLAST of Sed0007104 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 5   VASDTAAVLALSLVVFFALSRAPGS-AGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSP 64
           +A+ T    ALS+ +FFA+     S     +S +PAV+ + TS NMSSFFPSP D+   P
Sbjct: 1   MATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQ-RPP 60

Query: 65  ISAAPQ-----SPVPVSGEFVGRSGFSSVKLSYGISAFGLSICTFLV 106
            SAAP      +PVP SGEFVG+S  +SV+   GI+  G+ + + L+
Sbjct: 61  SSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGLVSLLI 106

BLAST of Sed0007104 vs. ExPASy TrEMBL
Match: A0A6J1F8A3 (uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC111441775 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 13  LALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSPISAAPQSPV 72
           +ALSL  FFA+S A  SA   +S +P V  HR SQNMSSFFPSPVD  SSPISAAP    
Sbjct: 11  VALSLAAFFAVSPAAVSA---ISASPPVPPHRASQNMSSFFPSPVDGRSSPISAAPAPAT 70

Query: 73  PV-SGEFVG-RSGFSSVKLSYGISAFGLSICT 103
            + SGEF+G RSG +SVKL++GISAFGLSIC+
Sbjct: 71  ALESGEFIGKRSGSNSVKLNHGISAFGLSICS 99

BLAST of Sed0007104 vs. ExPASy TrEMBL
Match: A0A6J1J7U9 (uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 2   AAVVASDTAAVLALSLVVFFALSRAPGSAGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWS 61
           AA  A+ +   +ALSL   FALS +  SA   +S +P V  HR SQNMSSFFPSPVD  S
Sbjct: 5   AAAAAAASFFCVALSLATLFALSPSAVSA---ISASPPVPPHRASQNMSSFFPSPVDGRS 64

Query: 62  SPISAAPQSPVPVSGEFVG-RSGFSSVKLSYGISAFGLSICT 103
           SPISAAP      SGEF+G RSG +SVKL++GISAFGLSIC+
Sbjct: 65  SPISAAPALE---SGEFIGKRSGSNSVKLNHGISAFGLSICS 100

BLAST of Sed0007104 vs. ExPASy TrEMBL
Match: A0A5N6QUU6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 5   VASDTAAVLALSLVVFFALSRAPGS-AGVQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSP 64
           +A+ T    ALS+ +FFA+     S     +S +PAV+ + TS NMSSFFPSP D+   P
Sbjct: 1   MATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQ-RPP 60

Query: 65  ISAAPQ-----SPVPVSGEFVGRSGFSSVKLSYGISAFGLSICTFLV 106
            SAAP      +PVP SGEFVG+S  +SV+   GI+  G+ + + L+
Sbjct: 61  SSAAPPNSEAFAPVPSSGEFVGKSSSNSVRFRSGITICGVGLVSLLI 106

BLAST of Sed0007104 vs. ExPASy TrEMBL
Match: A0A2N9I0C8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-07
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 5   VASDTAAVLALSLVVFFALSRAPGSAG-VQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSP 64
           +A+ T +  ALS+V+ FA+  AP S     +S +PAVS + T+ NMSSFF SP  +    
Sbjct: 1   MATITKSCAALSIVICFAILYAPSSTSEPTISASPAVSPYVTAPNMSSFFNSPSVQRPLS 60

Query: 65  ISAAPQS----PVPVSGEFVGRSGFSSVKLSYGISAFGLS-ICTFL 105
            +AAP S    PVP SGEFVGRS  +S +   GI+ FG+  +C F+
Sbjct: 61  SAAAPHSEAITPVPRSGEFVGRSSSNSARSDLGITIFGVGLVCLFV 106

BLAST of Sed0007104 vs. ExPASy TrEMBL
Match: A0A7N2KYA4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 5   VASDTAAVLALSLVVFFALSRAPGSAG-VQLSPTPAVSSHRTSQNMSSFFPSPVDEWSSP 64
           +A+ T +  AL +V+ FA+  AP S     +S +P+VS + T  NMSSFF SP  +    
Sbjct: 1   MATLTKSCAALFMVICFAILHAPSSTSEPTISASPSVSPYVTPPNMSSFFHSPSAQPPLS 60

Query: 65  ISAAPQS----PVPVSGEFVGRSGFSSVKLSYGISAFGLS-ICTFL 105
            +AAP S    PVP SGEFVGRS  +S +L  GI+ FG+  +C F+
Sbjct: 61  SAAAPHSKPITPVPSSGEFVGRSSSNSARLDNGITIFGVGLVCLFV 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022934640.15.4e-1564.13uncharacterized protein LOC111441775 [Cucurbita moschata][more]
XP_022983589.17.9e-1459.80uncharacterized protein LOC111482150 [Cucurbita maxima][more]
KAF3966928.12.4e-0745.28hypothetical protein CMV_009015 [Castanea mollissima][more]
XP_015570786.14.2e-0750.60uncharacterized protein LOC107260786 [Ricinus communis][more]
KAE8021266.17.1e-0742.99hypothetical protein FH972_007173 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F8A32.6e-1564.13uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
A0A6J1J7U93.8e-1459.80uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150... [more]
A0A5N6QUU63.4e-0742.99Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1[more]
A0A2N9I0C87.7e-0744.34Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46014 PE=4 SV=1[more]
A0A7N2KYA42.2e-0643.40Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007104.1Sed0007104.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane