Sed0007091 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAATTAGGTCGTTTGATGAGTTTTATGATCCAGAAACAGTCTCGACGGGTTCGCAAGGTAAAAATATTGAGGTGGATAACATTGAGTATGTTGAGCAATCGAATGAGTGGACAACATTCCGAGAAATGGTAGCTTCACATATGATGGCTACTTTGTGATCATCTATTTTTTTCTGTTAACTGTTTAGATGTTTTTGTTGTTGTTGTTGTTGTTTTTCTTTTTTAAAGTGAACTGTTTTGAATACTTAAGAACACCTTGTTTGTATTTTGTTTGAATTTTTTGATGTTAGTAGAATATGTGTTATGCTATTATTATTATTATTTTACTGTTGTTATATCCAAAAACATTTTTGAATATTTTAATCTAATCTTGTATTCCATATTCCCATCCCTTCAAAAAGTAATATGGCAAAGAAAGCAGAAATCAAGTGCAAGACATCAATGGACGAGCATCGAAGATGCTATTTTATTTGATGCGTTATTGGGTTTAGAAGCTCAACATCTAACCGCACCAAATGGGACCTTCCGTCCCAGTTACTTAGGAGCCCTCTTATTGGATATTCAAACGAAGATGCCAAATACTACACTAAATACTACGAGTATTGAATGCAAGGTTCGTACCCTAAAAAAACAGTATGCTGCCATCAAGGAAATGGTGGCCCCGGGTGGAAGTGGTTTCGGTTGGAATGAGGCTAGACAGTGTGTTGATATTGATAAAGACACATTCGATCTTTGGGTCAAGGTGTTTATACTTAACTTTATTTTTCAGAATAAAATATAAATTAAGGTAAATGTAATTGACATGGAAAAAAATGAATATATTTATGAGAACAAAATTGTTTTCAAATTATTGCTAAAAAAATAAGAAGAAAGTCTACCCATAAAATATTAAATGAAACATATTTGAAATAATATTTTCTTTACAACATAAAGAAAACTTAATTGAAAAATGACTCTTGTGAAACATTAGTTATTATTTGTCATCGAAGAAGAGCATGCATGAAAAGTGTCTTGGGAAAATGCATTGTTTTAATATATGGACTTCTTTTTGTTTTTTTTATCGACCCTATCTTCTCCAGCCCTTCTTATTTTTTTTCTTTCTTCTTCTCCTTCTTTCCCTTCCGTCTATTCTTCTCCCCTTCAATTGTTTTTCCTTTTCTTGCCTAAAAAACATGGGGTTATTTCTTGATTTGTTTTTCATTTTCAATTCTTTTTTTTCCTGAAGGAACAGTTACGATTCAGTGGCCTATTTTACTATTCATATATTAAAACATATGATTCACTTAATTTTCGATTCAAAATACACGTTTTCCTCGTTTCAATTTGTATCTTGGGTTTCGAATTGTTTATCCCACTTTTTTTTATATAACATTGCATTAATCATCATGTAACATACTATTATATCTCATACATTGCAGTCGCACCCGAATGCCGAAGGCCTATGGAGCAAGCCGTTTCCTCATTACCATGCACTGTCCTTAATATTCGGGAATGATATGTTAAAAGTCATCACTAGCCCATTGAAGTTTAGCCCAAAAATTATAAAAGCCCAATCATCATGA ATGGGAATTAGGTCGTTTGATGAGTTTTATGATCCAGAAACAGTCTCGACGGGTTCGCAAGAAGCTCAACATCTAACCGCACCAAATGGGACCTTCCGTCCCAGTTACTTAGGAGCCCTCTTATTGGATATTCAAACGAAGATGCCAAATACTACACTAAATACTACGAGTATTGAATGCAAGGTTCGTACCCTAAAAAAACAGTATGCTGCCATCAAGGAAATGGTGGCCCCGGGTGGAAGTGGTTTCGGTTGGAATGAGGCTAGACAGTGTGTTGATATTGATAAAGACACATTCGATCTTTGGGTCAAGTCGCACCCGAATGCCGAAGGCCTATGGAGCAAGCCGTTTCCTCATTACCATGCACTGTCCTTAATATTCGGGAATGATATGTTAAAAGTCATCACTAGCCCATTGAAGTTTAGCCCAAAAATTATAAAAGCCCAATCATCATGA ATGGGAATTAGGTCGTTTGATGAGTTTTATGATCCAGAAACAGTCTCGACGGGTTCGCAAGAAGCTCAACATCTAACCGCACCAAATGGGACCTTCCGTCCCAGTTACTTAGGAGCCCTCTTATTGGATATTCAAACGAAGATGCCAAATACTACACTAAATACTACGAGTATTGAATGCAAGGTTCGTACCCTAAAAAAACAGTATGCTGCCATCAAGGAAATGGTGGCCCCGGGTGGAAGTGGTTTCGGTTGGAATGAGGCTAGACAGTGTGTTGATATTGATAAAGACACATTCGATCTTTGGGTCAAGTCGCACCCGAATGCCGAAGGCCTATGGAGCAAGCCGTTTCCTCATTACCATGCACTGTCCTTAATATTCGGGAATGATATGTTAAAAGTCATCACTAGCCCATTGAAGTTTAGCCCAAAAATTATAAAAGCCCAATCATCATGA MGIRSFDEFYDPETVSTGSQEAQHLTAPNGTFRPSYLGALLLDIQTKMPNTTLNTTSIECKVRTLKKQYAAIKEMVAPGGSGFGWNEARQCVDIDKDTFDLWVKSHPNAEGLWSKPFPHYHALSLIFGNDMLKVITSPLKFSPKIIKAQSS Homology
BLAST of Sed0007091 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida]) HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27 Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 0
BLAST of Sed0007091 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 128.3 bits (321), Expect = 5.8e-26 Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Sed0007091 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25 Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 0
BLAST of Sed0007091 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida]) HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24 Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = 0
BLAST of Sed0007091 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis]) HSP 1 Score: 121.7 bits (304), Expect = 5.4e-24 Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 0
BLAST of Sed0007091 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23 Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0
BLAST of Sed0007091 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0
BLAST of Sed0007091 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0
BLAST of Sed0007091 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0
BLAST of Sed0007091 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0
BLAST of Sed0007091 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 7.8e-05 Identity = 19/69 (27.54%), Postives = 36/69 (52.17%), Query Frame = 0
BLAST of Sed0007091 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 44.7 bits (104), Expect = 7.8e-05 Identity = 19/69 (27.54%), Postives = 36/69 (52.17%), Query Frame = 0
BLAST of Sed0007091 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04 Identity = 23/71 (32.39%), Postives = 39/71 (54.93%), Query Frame = 0
BLAST of Sed0007091 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04 Identity = 23/71 (32.39%), Postives = 39/71 (54.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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