Sed0007051 (gene) Chayote v1

Overview


Name	Sed0007051
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF 3339)
Location	LG02: 47425634 .. 47426145 (-)
RNA-Seq Expression	Sed0007051
Synteny	Sed0007051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATTTAAAATGAAGGTTTTTGTGATGTGTTTTTGTTGAAAAGCCCAAATATAAAAGGGGCATCAAAAGAGAGAAGAAAATGCACAAGGCAAAAAGAATGGGGGATTGGGGGCCAGTTTTTGTAGCAGTTATTCTGTTTATTCTGTTGTCGCCGGGGCTTCTGTTTCAGATCCGCGCCGCCGACAAGTTCGTTGAGTTCGGTAACTTTGAAACCAACCCCACTTCCATTTTTCTTCATTCTATCATCTTCTTCGCTCTCTTTTGTCTCTTCACTATCGTCCTTCCCCTTCATATCTACATTTGATCTCATCGAATGTTTCGATCTTACATTCATATTTCATGTCAATTGAGTTTTGTTTTCGTTTGTAAACGGTTTGTTTCCGTGTTATTGTTGTAGTATTGTGTCGATTTTTCTCACTTTTACCTTAAGTGAGACTATGTTATTGTTTAATATATGATCGTTATCTCATTTTATGTTAATTGAGTTTTGTTTTTGTTGTTAAGTTTGTG

mRNA sequence

AGTAATTTAAAATGAAGGTTTTTGTGATGTGTTTTTGTTGAAAAGCCCAAATATAAAAGGGGCATCAAAAGAGAGAAGAAAATGCACAAGGCAAAAAGAATGGGGGATTGGGGGCCAGTTTTTGTAGCAGTTATTCTGTTTATTCTGTTGTCGCCGGGGCTTCTGTTTCAGATCCGCGCCGCCGACAAGTTCGTTGAGTTCGGTAACTTTGAAACCAACCCCACTTCCATTTTTCTTCATTCTATCATCTTCTTCGCTCTCTTTTGTCTCTTCACTATCGTCCTTCCCCTTCATATCTACATTTGATCTCATCGAATGTTTCGATCTTACATTCATATTTCATGTCAATTGAGTTTTGTTTTCGTTTGTAAACGGTTTGTTTCCGTGTTATTGTTGTAGTATTGTGTCGATTTTTCTCACTTTTACCTTAAGTGAGACTATGTTATTGTTTAATATATGATCGTTATCTCATTTTATGTTAATTGAGTTTTGTTTTTGTTGTTAAGTTTGTG

Coding sequence (CDS)

ATGCACAAGGCAAAAAGAATGGGGGATTGGGGGCCAGTTTTTGTAGCAGTTATTCTGTTTATTCTGTTGTCGCCGGGGCTTCTGTTTCAGATCCGCGCCGCCGACAAGTTCGTTGAGTTCGGTAACTTTGAAACCAACCCCACTTCCATTTTTCTTCATTCTATCATCTTCTTCGCTCTCTTTTGTCTCTTCACTATCGTCCTTCCCCTTCATATCTACATTTGA

Protein sequence

MHKAKRMGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTIVLPLHIYI

Homology

[Close]

BLAST of Sed0007051 vs. NCBI nr
Match: XP_022972134.1 (uncharacterized protein LOC111470766 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 5  KRMGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLF 64
          +RM DWGPV VAVILFILLSPGLLFQ+  ADKF++FGNFET+ TSIFLHS+IFFALFCLF
Sbjct: 10 RRMADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLF 69

Query: 65 TIVLPLHIYI 75
          T+VL LHIY+
Sbjct: 70 TLVLHLHIYV 79

[Close]

BLAST of Sed0007051 vs. NCBI nr
Match: XP_038907108.1 (uncharacterized protein LOC120092931 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPVFVAVILFILLSPGLLFQ+  A+KF+EFGNFET+ TSIFLHS+IFFALFCLFT+
Sbjct: 1  MADWGPVFVAVILFILLSPGLLFQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 67 VLPLHIYI 75
          V+ LHIYI
Sbjct: 61 VIHLHIYI 68

[Close]

BLAST of Sed0007051 vs. NCBI nr
Match: XP_022932695.1 (uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 uncharacterized protein LOC111799840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV VAVILFILLSPGLLFQ+  ADKF++FGNFET+ TSIFLHS+IFFALFCLFT+
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 67 VLPLHIYI 75
          VL LHIY+
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of Sed0007051 vs. NCBI nr
Match: KAG6582034.1 (hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 3  KAKRMGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFC 62
          K   M DWGPV VAV+LFILLSPGL+ Q+  A+KF+EFGNFET+ TSIFLHS+IFFALFC
Sbjct: 14 KEATMADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFC 73

Query: 63 LFTIVLPLHIYI 75
          LFT+VL LHIYI
Sbjct: 74 LFTLVLHLHIYI 85

[Close]

BLAST of Sed0007051 vs. NCBI nr
Match: KAG7018460.1 (hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV VAV+LFILLSPGL+ Q+  A+KF+EFGNFET+ TSIFLHS+IFFALFCLFT+
Sbjct: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 67 VLPLHIYI 75
          VL LHIYI
Sbjct: 61 VLHLHIYI 68

[Close]

BLAST of Sed0007051 vs. ExPASy TrEMBL
Match: A0A6J1IAL9 (uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 5  KRMGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLF 64
          +RM DWGPV VAVILFILLSPGLLFQ+  ADKF++FGNFET+ TSIFLHS+IFFALFCLF
Sbjct: 10 RRMADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLF 69

Query: 65 TIVLPLHIYI 75
          T+VL LHIY+
Sbjct: 70 TLVLHLHIYV 79

[Close]

BLAST of Sed0007051 vs. ExPASy TrEMBL
Match: A0A6J1F2V4 (uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC111439164 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV VAVILFILLSPGLLFQ+  ADKF++FGNFET+ TSIFLHS+IFFALFCLFT+
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 67 VLPLHIYI 75
          VL LHIY+
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of Sed0007051 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPVFVAV+LF+LLSPGLLFQ+    +FVEFGNF T+  SIF+HS+IFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 67 VLPLHIYI 75
          V+ LHIYI
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of Sed0007051 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPVFVAV+LF+LLSPGLLFQ+     F++FGNF+T+  SIF+HS+IFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 67 VLPLHIYI 75
          VL LHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Sed0007051 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPVFVAV+LF+LLSPGLLFQ+     F++FGNF+T+  SIF+HS+IFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 67 VLPLHIYI 75
          VL LHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of Sed0007051 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-18
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV V VILF++L+PGLLFQ+    K+VEFGNF+T+  S+ +HS+++F+L C+F +
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 67 VLPLHIYI 75
           L +HIYI
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of Sed0007051 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 86.7 bits (213), Expect = 8.8e-18
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV VAVILF+LL+PGLLFQI A  + VEFGN +T+  SI +H+IIFF L  +FTI
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 67 VLPLHIY 74
           + LHIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of Sed0007051 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPV +AVILF++LSPGLLFQI A  + VEFGN +T+  SI +H+IIFF L  +FTI
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 67 VLPLHIY 74
           + +HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of Sed0007051 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 7  MGDWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTI 66
          M DWGPVFVAV LF+LL+PGLL Q+    + VEFG F+T+  S+ +H++I+F L C+  +
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 67 VLPLHI 73
           L +HI
Sbjct: 61 ALQIHI 66

[Close]

BLAST of Sed0007051 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 9  DWGPVFVAVILFILLSPGLLFQIRAADKFVEFGNFETNPTSIFLHSIIFFALFCLFTIVL 68
          DWGPV VAV LFILLSPGLLFQ+ A  + +EFGN  T+  SI +H+II+F +  +  I +
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 69 PLHIY 74
           +HI+
Sbjct: 64 QIHIH 68

The following BLAST results are available for this feature:

BLAST of Sed0007051 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972134.1	3.8e-23	80.00	uncharacterized protein LOC111470766 [Cucurbita maxima]	[more]
XP_038907108.1	1.5e-22	82.35	uncharacterized protein LOC120092931 [Benincasa hispida]	[more]
XP_022932695.1	4.2e-22	80.88	uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 unchar...	[more]
KAG6582034.1	2.7e-21	75.00	hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018460.1	1.0e-20	77.94	hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0007051 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAL9	1.9e-23	80.00	uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766...	[more]
A0A6J1F2V4	2.0e-22	80.88	uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	1.8e-18	72.06	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1I7P7	4.0e-18	69.12	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	4.0e-18	69.12	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]

BLAST of Sed0007051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	3.9e-18	55.88	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	8.8e-18	64.18	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.5e-17	61.19	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	1.6e-14	51.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40980.1	1.3e-13	53.85	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 7..73 e-value: 9.4E-29 score: 99.4
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 7..74
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 7..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007051.1	Sed0007051.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane