Sed0007048 (gene) Chayote v1

Overview


Name	Sed0007048
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 1904076 .. 1904372 (-)
RNA-Seq Expression	Sed0007048
Synteny	Sed0007048

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTTCGGTTATCAACACGGCAGCGGTCGTTATCGTTCTTCTCTGTCTTTCTTCCACGTCGGTGGCTAGGGTCTTGGAGAGGCAATTGCGAGCTCCGGTGCCTCCTTCCGGGAGGAATCCTTGTACGTTTATCCCCGGGCTCGGTCATGGACGGAGCACGTTGGCGGAGGTGGAAGATGGGACCGACGCGGGTGGCTCCTCCGTCTTCCCCGGCATGAATTTTGAAGGGTTTAGGGCGGCTTCCTTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGATCTTGA

mRNA sequence

ATGGCTTCTTCTTCGGTTATCAACACGGCAGCGGTCGTTATCGTTCTTCTCTGTCTTTCTTCCACGTCGGTGGCTAGGGTCTTGGAGAGGCAATTGCGAGCTCCGGTGCCTCCTTCCGGGAGGAATCCTTGTACGTTTATCCCCGGGCTCGGTCATGGACGGAGCACGTTGGCGGAGGTGGAAGATGGGACCGACGCGGGTGGCTCCTCCGTCTTCCCCGGCATGAATTTTGAAGGGTTTAGGGCGGCTTCCTTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGATCTTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCGGTTATCAACACGGCAGCGGTCGTTATCGTTCTTCTCTGTCTTTCTTCCACGTCGGTGGCTAGGGTCTTGGAGAGGCAATTGCGAGCTCCGGTGCCTCCTTCCGGGAGGAATCCTTGTACGTTTATCCCCGGGCTCGGTCATGGACGGAGCACGTTGGCGGAGGTGGAAGATGGGACCGACGCGGGTGGCTCCTCCGTCTTCCCCGGCATGAATTTTGAAGGGTTTAGGGCGGCTTCCTTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGATCTTGA

Protein sequence

MASSSVINTAAVVIVLLCLSSTSVARVLERQLRAPVPPSGRNPCTFIPGLGHGRSTLAEVEDGTDAGGSSVFPGMNFEGFRAASLVNQTEKQDPSLRS

Homology

[Close]

BLAST of Sed0007048 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-22
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 5   SVINT--AAVVIVLLCLSSTSVARVL---------ERQLRAPVPPSGRNPCTFIPGLGHG 64
           SV+ T  AA V +LLC+   S ARVL         +R LR  VPPSGRNPC+FIPGLG G
Sbjct: 4   SVMKTPAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFIPGLGRG 63

Query: 65  RSTLAEVED----GTDAGGSSVFPGMNFEGFRAASLVNQTEKQDPSLR 98
           R TL+EVED    G   GGSS FPGMNF+GF AA++VN T+KQDPSLR
Sbjct: 64  RCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSLR 111

[Close]

BLAST of Sed0007048 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 5   SVINTAAVVIVLLCLSSTSVARVLERQ------LRAPVPPSGRNPCTFIPGLGHGRSTLA 64
           S++ T A + + L +   SV R L         LR PVP S RNPC+FIPG   GR TL+
Sbjct: 4   SLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLS 63

Query: 65  EVEDGTDA--GGSSVFPGMNFEGFRAASLVNQTEKQDPSLRS 99
           EV+DG  +  GGSS FPG+N +GF AAS+VNQT+KQD SL S
Sbjct: 64  EVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of Sed0007048 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 5   SVINTAAVVIVLLCLSSTSVARVLERQ------------LRAPVPPSGRNPCTFIPGLGH 64
           S++ T A + + L +   S ARVL  +            LR PVP S RNPC+FIPG   
Sbjct: 4   SLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSR 63

Query: 65  GRSTLAEVEDGTDA--GGSSVFPGMNFEGFRAASLVNQTEKQDPSLRS 99
           GR TL+EV++G  +  GGSS FPG+N +GF AAS+VNQT+KQD S+ S
Sbjct: 64  GRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of Sed0007048 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 26 RVLERQLRAPVPPSGRNPCTFIPGLGHGRSTLAEVEDGTDA--GGSSVFPGMNFEGFRAA 85
          RV    LR  VP S RNPC+FIPG   GR TL+E +DG  A  GGSS   G+N +GF AA
Sbjct: 17 RVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGGSSALSGLNADGFAAA 76

Query: 86 SLVNQTEKQDPSLR 98
          S+ N+T+K+DPSLR
Sbjct: 77 SMANKTQKKDPSLR 90

[Close]

BLAST of Sed0007048 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 5   SVINTAAVVIVLLCLSSTSVARVLERQ------LRAPVPPSGRNPCTFIPGLGHGRSTLA 64
           S++ T A + + L +   SV R L         LR PVP S RNPC+FIPG   GR TL+
Sbjct: 4   SLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLS 63

Query: 65  EVEDGTDA--GGSSVFPGMNFEGFRAASLVNQTEKQDPSLRS 99
           EV+DG  +  GGSS FPG+N +GF AAS+VNQT+KQD SL S
Sbjct: 64  EVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of Sed0007048 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 5   SVINTAAVVIVLLCLSSTSVARVLERQ------------LRAPVPPSGRNPCTFIPGLGH 64
           S++ T A + + L +   S ARVL  +            LR PVP S RNPC+FIPG   
Sbjct: 4   SLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSR 63

Query: 65  GRSTLAEVEDGTDA--GGSSVFPGMNFEGFRAASLVNQTEKQDPSLRS 99
           GR TL+EV++G  +  GGSS FPG+N +GF AAS+VNQT+KQD S+ S
Sbjct: 64  GRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of Sed0007048 vs. ExPASy TrEMBL
Match: A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 39/102 (38.24%), Postives = 46/102 (45.10%), Query Frame = 0


Query: 12  VVIVLLCLSSTSVARVLERQL------------RAPVPPSGRNPCTFIPGLGHGRSTLAE 71
           ++  +LC    S  R LE +             R PVP SG NPCT+IPG G GR TLAE
Sbjct: 52  IIFSVLCFRQLSAMRPLEEEQWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRCTLAE 111

Query: 72  VEDGTDAGGSSVFPGMN------FEGFRAASLVNQTEKQDPS 96
            E     G  +V P            F AAS  N T K+D S
Sbjct: 112 NEMNFAGGHDNVAPAPPAAFPDFMVKFAAASKDNDTRKKDTS 153

[Close]

BLAST of Sed0007048 vs. ExPASy TrEMBL
Match: A0A5C7I9N7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007275 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-04
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 27  VLERQLRAPVPPSGRNPCTFIPGLGHGRSTLAEVEDGTDAG-GSSVFPGMNFEGFRAASL 86
           +++   + PVPP+G NPCTFIPG G GR TL+E++    A     VFP      F AAS+
Sbjct: 50  IVQSLQKGPVPPAGGNPCTFIPGRGRGRCTLSEMDFADHAAHAPPVFPDRLIARFGAASV 109

[Close]

BLAST of Sed0007048 vs. ExPASy TrEMBL
Match: A0A5B6Z868 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-04
Identity = 32/65 (49.23%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 33  RAPVPPSGRNPCTFIPGLGHGRSTLAEVE----DGTDAGGSSVFPGMNFEGFRAASLVNQ 92
           R PVP SG NPCT+IPG G GR TLAE E        A     FP      F AAS  N 
Sbjct: 50  RGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGELVAHAPPAFPDF-MVNFAAASKAND 109

Query: 93  TEKQD 94
           T+K+D
Sbjct: 110 TQKKD 113

The following BLAST results are available for this feature:

BLAST of Sed0007048 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586324.1	9.5e-22	60.19	hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063581.1	2.7e-16	51.96	hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790...	[more]
KGN60782.1	1.7e-15	48.15	hypothetical protein Csa_019261 [Cucumis sativus]	[more]
KAG6599331.1	3.6e-13	56.76	hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0007048 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCY2	1.3e-16	51.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJ84	8.4e-16	48.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1	[more]
A0A5B6Z7Q1	2.0e-04	38.24	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663...	[more]
A0A5C7I9N7	7.4e-04	45.00	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007275 PE=4 SV=1	[more]
A0A5B6Z868	7.4e-04	49.23	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1	[more]

BLAST of Sed0007048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007048.1	Sed0007048.1	mRNA