Sed0007004 (gene) Chayote v1

Overview


Name	Sed0007004
Type	gene
Organism	Sechium edule (Chayote v1)
Description	polyadenylate-binding protein 2-like
Location	LG07: 8895343 .. 8900918 (+)
RNA-Seq Expression	Sed0007004
Synteny	Sed0007004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATATAGAGGAGCCGGTTTGAAGGCGAAGTTTACTGCAACTCCGTCGAGAGAGAAAAGGGGGGAAAGAGAGAGAAACGAATCGCCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAATCGATGGAGCACGAAGATGACGTGGACATGGTTGCCTCCGACCACCCCAACGACGCCGTGGTTCGTTCTTCGATTCCTGTTTACTTTTTCGTCTTCTTCAAACCCTAATAATTCCCCCTTTTCCAGGAGCTGGACGACATGAAGAAACGCCTGAAAGAGATGGAGGATGAAGCTGCTGCCCTGCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGACCTCCGTGCAAGGTCCTATTACAATGCCGATTGAGGATTCTGTTTGTTGTGTGCTTATTTCTGATTTGCTTTTTGTGTTTTTTGAATGGCTGTTTCTTTGATGCGAGTTGACGATGTTATGGAAACCGTCTCAAAGGTCTAGCTAGACCTTGCATTTGCTTTTTGTTCGTTCATTTAGCCCTAAGCTTTTTACTTGGTTGCTAAATTCTCATGATTTTTTACCCCTTTTCAGAGCAGTAGGTCATAAGTCGGTTCATCCCAATTAATATTGCTTTCCACTTGTTCAGCCTTTCAAGTTTTCCAGTCTGGAAAGGACAGGAGTGTTGGTTGATATTATCAACTTTGATTGTTTTCATTTAACATGATTCAACATTTTTTACTCAAGGGGTGGCACACTGGTTGAAGACTTGGGCTTTGAGGATATGCTCTCCTCAAGCTCCCAGGTTCGAAACTCACCTATAACGTTACTCCTTCGATGTTTCTGGTGCCTGGCTTAGGAACGAGCGTGGTTACCTTATTTCAAAAAAAAAGAAAAAAACATGATTCAACACTTTTCATATTGGAGTGGTACATTGCCTGAGAGACCAAGTTTTGAACTTTTTTCAGCTATGGCTACTTCCTTTTTATTATCCTTTTTTGGAAGTAGAAATTATTTCATTTTGGAAGGAAGGAGATCAAACTCTGAAGTCTGATCACCTAATGGATGGGGAATTACACAAAGGATTTTCAATTTGAAACTAATAAGTAAAAGAGTGCTTCTTTGGGGACATCCGATCAATAAGTAAAAGACTGTTTAGTTCTCTGGTGCCAAACCTAGGGACGGGCGTGGTTACCCTCGTTTAAAAAAAAAAGAGTAAAAGACTGTTTAGTTTTACATGCTTTTAACGTCCTAAATACATACGCATGCTTTCTTAGTTATATTGTGTCTGTTATTATCAAATATTTAACCACTTTTTGTTTTACCAGACCCAGGAAGTGCTTCTGCAAGTCAAGCAAATAAGGAGGAAGTGGATTCACGCTCAGTGTTTGTTGGCAATGTACGTTCTCTTATCCCTGACCAACCCAACGTTCTCTTTTTTTATATTAATTCATTCACTTGCTTTGGTCACTCATGCTGCACAATTAGCCGAATTTTGATCTATCGGTGAAAGGATACTTTTTGTTCATGTTAAATTCCTGAACTATATCACCTTTGTTTCCATTAGAGACTTAGCTCACCTAAAGAAGAAGGCTATATGTTTCCATTAACAACAAGCTAATGGATTTTTATGGGTTCACAATGTATGACATTGGAGGGCCTCTTGTTCTTTGCGCTGGGTGCAGGCACAATGTATGTCATGTGTAGTAATGTTAATTTTCACGATGGTCTCCGAGGGGTGGTACATTGGTTGAAAAATTAGGCTTTGAAGGTGTGCTTCCCTTAAGGTCTCTGGTTCAAAACTCACCCGTGACATTAATTTGTAGACACCTTCATTGTGTCTCCATTCCTTCGATGTCTCCCGGTGCCTGACCTAGGGATGGGTGTGGTTACCCCAGGTATAGTGAAGTGAAGTTCTGATTTCCCGGTTTTAAAAAAAATAACAATGAAGCCATGAATTTATCAACTCTAATAGCTTATGGAGGGAAACACATGGAGTATCATTAATCTAACCTTTTTCCCATTTTCTTAGTTGTATCATTGTTTGAAATACTTCAAAATTGTCTCTTCTTACTCTACCACACATTGTCACGCAGTTTATGATGAAAAGCTTAGACTTCATCTTTTATAAAAGATACTTACAGAAGAACTATACTCTTCGTTTAATTATTAAAAGAGCTTTTTGAGTATAATTTTCTTTGAGTCTTCATATATTTAATTCTTGACATGGATTGAACTTCAACTCACTGACTTTTATTCCTTGGCTTTGTTCATTCCCAGTATGGGCATAAAGGTTTATTAAATTTCAGTTAGCCATGAGTTTTTGTTTGATTTGGTACATGTTTTCTTTCTATCTAGAGATTATTGCTATAAATTCAATTCAGATTGCTACTTTTCACGTTTTATGAGTAATCCATCTCTGTACTGTGCTTCACATTTATAGCATGCTGGTGTTTCTAGCCTGATTTGACTCCTGTGTTTGACTGCAATTACAGGCTAGGCTTACTTCATCAGGTTTTCTGATTACCGATTGCTGAAGTCGGAGATATGTTATAAAATAGATATCTAGTATTAAAAAAGTGTCTTGGCCTGAAAAAAAAAGAGTAGATAAAACTTAAAAAGTATGTGATAAATTTCAGGTGTAAAATTTTCAAGAGGGTAAAAGTTTGATTAAATCCTTTAAAAAAAACGTGCAAAAAAATGTTGAGATGAGTTAACAAGAAGAAAAGATATACCATGCCTTGTTGGCTTAGTGGGTGGGTTGGGATTCTGTCAATCTAACATGTCTCAAGTTCTAGGTCATGTGGGTAATGTGGAAAAGGAGTTGGTAAAAAAAGAAGAGAGGAAACTCACTAGAATAAGGGTGTGTTTGGCTATGGATAAAGTCAGGTGAAGTTTTACTGGGTTGCTTGATTGAACTGGAACGATGGAGAGGACTTGACAAGTTTTGAAGGGAAGTAATGTGCATTCACAACTAAGGAGGGCTAGCTGTGGCGCTGAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTGACGACCATTGTTTGAGGATTGTTTAAGTGATTTACAATCTATGGTGAGGGACCTCCAAAGTCCAAATATCTCTCATTATCCTCTGTCTCCTTGCTTTATCCGTCAAGAAAAGGAAAAAATACATAATTAGGGAAGCTTTTATGTTTCTATTACTACTTTTGGGATTTTTTTGCCCTTGTACTTAGCCCACTCGGTCAGTTTTAACTTTAAAGTTGTAGTTCTATCCTATTAAACTTCATGCTCGAATAGGTTATGAAATTAAGATCCTCCTTAATACGAAGTCTGAAAAATGGGGTAAGTAATTAACCAATAAATTATTCAAAATCTAATCATATAAACATCCCTAAGTACTGCTGATAAGACTTCCAAATGCCGCTCAACTAAAAAACATCCATGTACAAACAATAAGTGATAGTCTTTCTCCAATCACAAGCACCCACTTTAACCTAAAATCTTTTTTTGTCTGGGTCAGCTTATGTGCACCTTGACTATTCTCACTGGATAGACCGTTTGACCCTACAACATTTGGATATCAAGGAAACCCGTAATCCCTTGGTAAATGGCATGGCTATTATGGATTGATTCCCTAACCTGTTAAGGGTTGTTTGTTTGACATATTTAGGTAGGATTTAGTTTTAGGATTTATTAATTTCTCATCGAAAACCTACATCCAATCGAGTTTTTACTAACTTCTCATTTTTACTTTAAAAATAATTCTCATTTCTAACCATTCATTTTTAATCATTCATTTACAACTACTCAATCATTTCTAACCACTCATTTTTAATCATTCCTTTCAAATCGACCAAAATAACTCATTTTTAATCATTTCTTTTTTAACTACTAAAAATAACCACTCATTTTAAATCTACATCCAAACAAGGTTCTGACTCAAACTCCTCTACACAAAACTACATTCAAATGAGTTTTTGGCTACAACTCTCAATTTTTAACTACTTTACACAACTCCTCAATATAACTCCTTAAGTTAAATCCTACCTAAATATGTCAAACAAACAGCCCCTTAGATCTCCAAGATCCTCTTTCACCACTCACCTAAAATCTCTAAAGAAAAAAAAAACAATTACCAACTAACAAACAGTTTTTCTTAAACTTCTATTCAGGTTCAATGGGATGAATTTAAAATCTTAAGATTATATTTGACTAAAGCAATGTACCTGGGTAAAATTCTATTTGATTTTTTTGGAGCAACAAAATGTTTCCACCTTTCCATAGATTATGTATACGAGGTATGCGTTTCGTACGATGGTGTCTTTTTACAGGGTCAATACATGATATTGTTGTGTGGAGAACACACATTCTATTATAATCACGGGTCACAAAGTTATTAATCGTCCAGGATTTTAGAAGAGAACGAATATGGAGAAACTAGAGTCGCTTGGTGGTTGTTTTTTTCCTCTCGTGAATGGTTTTCGTTCTGGAATTAGTAGGGGACTTATTATTATGAATTGACCCGACTTGATGCTTTACAGGGTAGGCGTGTTATGTATATGTGATATGTACTCTGACTATCATGCATGCCAGTGAATATTTGATATTTTTATGTGAAGAAAATAGCTGAGATTGTGTAGAACTTGTGGCAACAGACTTGCTGCTTATAATTCAATTCATAACTTAATTACGTTAAGATAAATTTTCTCCTCACAGTAATAATGCAAGCCCTTTTTATTGCTTTTTTGCTTCATGGTATGACAAATGTGTTGAGATTCAACTGGAACAGGTTGACTACTCGTGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACCGATAAGTTTGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTCGAGCCAGAAGCTGTTCAAGAGGCTATTCTTTTGAATGAATCAGAACTACATGGTCGGCAGCTGAAGGTGCACACATCTATATGAATTACTTGATTAGTGTTTGTTTAAGATTCATCTTCTGAGATTTTTAAGTATGCTGTAGGTAACTGCCAAGAGAACAAACATACCTGGAATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGGGCTCGATCCAGGGGCCCATATGTCGCTGCTCCAACTCCATATTTTATCGCGCCATTTGGATACGGGTACGACTATTGAATACAAAATTTCCATGCTAACAGCTTGAATCTTACGGCCCTCATCATCCCAGTCATTTAGCATAGTTGTCCATCTATTGCAGGAAAGTCCCGAGGTTCCGAATGCCATCGCGTTACGGCCCCTATTATTAAATGTCAGTTTTGTTTGGGGAGCTGTTCAATCAGAGATATCACACTTGAATGTTTGCATGCCCTTTCTTTTTATTTATGATGTAAACTGATGATGTTTGGATATAATTTCAAGAGATCTTTTTTGTTTATAAGAAATGAACTGTGGCATGCTCGATGCAGGTTCAACCTCGATTACAAAGTGTAAAGAAAAAGGCTCTCTGGACTTGCAGCAGGTAGCTTTCAAGATTTAAGTATTCCCTTTGAATTGCATGCTCGTATTTTTAGTAATTTAAGTCGAG

mRNA sequence

GGAAAATATAGAGGAGCCGGTTTGAAGGCGAAGTTTACTGCAACTCCGTCGAGAGAGAAAAGGGGGGAAAGAGAGAGAAACGAATCGCCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAATCGATGGAGCACGAAGATGACGTGGACATGGTTGCCTCCGACCACCCCAACGACGCCGTGGAGCTGGACGACATGAAGAAACGCCTGAAAGAGATGGAGGATGAAGCTGCTGCCCTGCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGACCTCCGTGCAAGACCCAGGAAGTGCTTCTGCAAGTCAAGCAAATAAGGAGGAAGTGGATTCACGCTCAGTGTTTGTTGGCAATGTTGACTACTCGTGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACCGATAAGTTTGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTCGAGCCAGAAGCTGTTCAAGAGGCTATTCTTTTGAATGAATCAGAACTACATGGTCGGCAGCTGAAGGTAACTGCCAAGAGAACAAACATACCTGGAATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGGGCTCGATCCAGGGGCCCATATGTCGCTGCTCCAACTCCATATTTTATCGCGCCATTTGGATACGGGAAAGTCCCGAGGTTCCGAATGCCATCGCGTTACGGCCCCTATTATTAAATGTCAGTTTTGTTTGGGGAGCTGTTCAATCAGAGATATCACACTTGAATGTTTGCATGCCCTTTCTTTTTATTTATGATGTAAACTGATGATGTTTGGATATAATTTCAAGAGATCTTTTTTGTTTATAAGAAATGAACTGTGGCATGCTCGATGCAGGTTCAACCTCGATTACAAAGTGTAAAGAAAAAGGCTCTCTGGACTTGCAGCAGGTAGCTTTCAAGATTTAAGTATTCCCTTTGAATTGCATGCTCGTATTTTTAGTAATTTAAGTCGAG

Coding sequence (CDS)

ATGGAGCACGAAGATGACGTGGACATGGTTGCCTCCGACCACCCCAACGACGCCGTGGAGCTGGACGACATGAAGAAACGCCTGAAAGAGATGGAGGATGAAGCTGCTGCCCTGCGCGAGATGCAGGCCAAGGTCGAGAAGGAAATGACCTCCGTGCAAGACCCAGGAAGTGCTTCTGCAAGTCAAGCAAATAAGGAGGAAGTGGATTCACGCTCAGTGTTTGTTGGCAATGTTGACTACTCGTGTACCCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGAACTGTAAACAGAATCACTATTCGCACCGATAAGTTTGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTCGAGCCAGAAGCTGTTCAAGAGGCTATTCTTTTGAATGAATCAGAACTACATGGTCGGCAGCTGAAGGTAACTGCCAAGAGAACAAACATACCTGGAATGAAGCAGTATCGTCCACGCCGATCCAATCCATTTATGGGGGCTCGATCCAGGGGCCCATATGTCGCTGCTCCAACTCCATATTTTATCGCGCCATTTGGATACGGGAAAGTCCCGAGGTTCCGAATGCCATCGCGTTACGGCCCCTATTATTAA

Protein sequence

MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIAPFGYGKVPRFRMPSRYGPYY

Homology

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BLAST of Sed0007004 vs. NCBI nr
Match: XP_038877304.1 (polyadenylate-binding protein 2-like [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DDVDM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDVDMIGSD-TNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. NCBI nr
Match: XP_011653388.1 (polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothetical protein Csa_015373 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DDVDM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDVDMIGSD-ANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA0061167.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa] >TYK29930.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.6e-94
Identity = 182/202 (90.10%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DD+DM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDIDMIGSD-TNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 351.7 bits (901), Expect = 4.3e-93
Identity = 180/202 (89.11%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEHE D+DM+ S+  NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEHE-DIDMIGSE-SNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+E
Sbjct: 61  SQANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. NCBI nr
Match: XP_011653386.1 (polyadenylate-binding protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.6e-92
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DDVDM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDVDMIGSD-ANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYG-----KVPRFRMPSRYGPYY 203
            +P+GYG     KVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGSICCRKVPRFRMPTRYGPYY 202

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BLAST of Sed0007004 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-73
Identity = 146/197 (74.11%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 6   DVDMVASDHPNDAV-ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQAN 65
           D+DM A+D  +DAV ELD+MKKRLKEMEDEAAALREMQAKVEKEM   QDP S +A+QA 
Sbjct: 29  DLDMAAAD--DDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEM-GAQDPASIAANQAG 88

Query: 66  KEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAV 125
           KEEVD+RSVFVGNVDY+CTPEEVQQHFQ+CGTV+R+TI TDKFGQPKG+AYVEFVE EAV
Sbjct: 89  KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAV 148

Query: 126 QEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIAPF 185
           QEA+ LNESELHGRQLKV  KRTN+PG+KQ+R RR NP+MG R R P++   +PY  +P+
Sbjct: 149 QEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM---SPYMYSPY 208

Query: 186 GYGKVPRFRMPSRYGPY 202
           GYGK PRFR P RY PY
Sbjct: 209 GYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Sed0007004 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.7e-72
Identity = 143/199 (71.86%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 4   EDDVDMVASDHPNDAV-ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQ 63
           + D+DM A+D   DAV EL +MK+RLKEME+EAAALREMQAKVEKEM + QDP S +A+Q
Sbjct: 23  DPDIDMSAAD--EDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQ 82

Query: 64  ANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 123
             KEEVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE E
Sbjct: 83  EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVE 142

Query: 124 AVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIA 183
           AVQEA+ LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V    PYF +
Sbjct: 143 AVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV---PPYFYS 202

Query: 184 PFGYGKVPRFRMPSRYGPY 202
           P+GYGK PRFR P RY PY
Sbjct: 203 PYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Sed0007004 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-61
Identity = 128/204 (62.75%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 2   EHEDDVDMVASDHP----NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGS 61
           EH  +    A D      + + +L+DMKKR+KE+E+EA ALREMQAK EK+M + QDP S
Sbjct: 31  EHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-S 90

Query: 62  ASASQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVE 121
              S A KEEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVE
Sbjct: 91  GGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVE 150

Query: 122 FVEPEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPT 181
           FVE EAVQ +++LNESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V    
Sbjct: 151 FVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--- 210

Query: 182 PYFIAPFGYGKVPRFRMPSRYGPY 202
             F  P+ YG+VPRFR P RY PY
Sbjct: 211 --FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Sed0007004 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-34
Identity = 83/154 (53.90%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 20  ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQANKEEVDSRSVFVGNVD 79
           EL +MK+R+ EME EAA LR MQ +++ E  ++++         +KE +D++SV+VGNVD
Sbjct: 13  ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESIDAQSVYVGNVD 72

Query: 80  YSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFVEPEAVQEAILLNESELHGR 139
           YS TPEE+Q HF SCG+VNR+TI  DKF G PKG+AY+EF EP  V  A+LLN S LH R
Sbjct: 73  YSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHER 132

Query: 140 QLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPY 173
            LKVT KRTN+PGM + R R      G R RG Y
Sbjct: 133 PLKVTPKRTNVPGMSRGRGRGRGRGRG-RGRGGY 156

[Close]

BLAST of Sed0007004 vs. ExPASy Swiss-Prot
Match: Q8CCS6 (Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-31
Identity = 82/184 (44.57%), Postives = 119/184 (64.67%), Query Frame = 0


Query: 2   EHEDDVDMVASDHPNDAV---ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSA 61
           E E++  +V +D  + A+   EL+ +K R++EME+EA  L+E+Q +VEK+M     PG+A
Sbjct: 93  EEEEEPGLVEADPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNA 152

Query: 62  S---ASQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYA 121
                S   K E D+RS++VGNVDY  T EE++ HF  CG+VNR+TI  DKF G PKG+A
Sbjct: 153 GPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFA 212

Query: 122 YVEFVEPEAVQEAILLNESELHGRQLKVTAKRTNIPGM---------KQYRPRRSNPFMG 170
           Y+EF + E+V+ ++ L+ES   GRQ+KV  KRTN PG+          +YR R +N +  
Sbjct: 213 YIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN-YNS 272

[Close]

BLAST of Sed0007004 vs. ExPASy TrEMBL
Match: A0A0A0KXZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DDVDM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDVDMIGSD-ANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.2e-94
Identity = 182/202 (90.10%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DD+DM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDIDMIGSD-TNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.2e-94
Identity = 182/202 (90.10%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DD+DM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDIDMIGSD-TNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 180/202 (89.11%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEHE D+DM+ S+  NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEHE-DIDMIGSE-SNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+E
Sbjct: 61  SQANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYGKVPRFRMPSRYGPYY 203
            +P+GYGKVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of Sed0007004 vs. ExPASy TrEMBL
Match: A0A1S3CIE7 (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.3e-92
Identity = 182/207 (87.92%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MEHEDDVDMVASDHPNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASA 60
           MEH DD+DM+ SD  NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEM+SVQDP SA+A
Sbjct: 1   MEH-DDIDMIGSD-TNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAA 60

Query: 61  SQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120
           SQAN+EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE
Sbjct: 61  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVE 120

Query: 121 PEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYF 180
           PEAVQEA+LLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSR PYVA   PYF
Sbjct: 121 PEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVA---PYF 180

Query: 181 IAPFGYG-----KVPRFRMPSRYGPYY 203
            +P+GYG     KVPRFRMP+RYGPYY
Sbjct: 181 FSPYGYGSICCRKVPRFRMPTRYGPYY 202

[Close]

BLAST of Sed0007004 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 277.7 bits (709), Expect = 7.3e-75
Identity = 146/197 (74.11%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 6   DVDMVASDHPNDAV-ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQAN 65
           D+DM A+D  +DAV ELD+MKKRLKEMEDEAAALREMQAKVEKEM   QDP S +A+QA 
Sbjct: 29  DLDMAAAD--DDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEM-GAQDPASIAANQAG 88

Query: 66  KEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAV 125
           KEEVD+RSVFVGNVDY+CTPEEVQQHFQ+CGTV+R+TI TDKFGQPKG+AYVEFVE EAV
Sbjct: 89  KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAV 148

Query: 126 QEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIAPF 185
           QEA+ LNESELHGRQLKV  KRTN+PG+KQ+R RR NP+MG R R P++   +PY  +P+
Sbjct: 149 QEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM---SPYMYSPY 208

Query: 186 GYGKVPRFRMPSRYGPY 202
           GYGK PRFR P RY PY
Sbjct: 209 GYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Sed0007004 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-73
Identity = 143/199 (71.86%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 4   EDDVDMVASDHPNDAV-ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQ 63
           + D+DM A+D   DAV EL +MK+RLKEME+EAAALREMQAKVEKEM + QDP S +A+Q
Sbjct: 23  DPDIDMSAAD--EDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQ 82

Query: 64  ANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 123
             KEEVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE E
Sbjct: 83  EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVE 142

Query: 124 AVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIA 183
           AVQEA+ LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V    PYF +
Sbjct: 143 AVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV---PPYFYS 202

Query: 184 PFGYGKVPRFRMPSRYGPY 202
           P+GYGK PRFR P RY PY
Sbjct: 203 PYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Sed0007004 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.8 bits (639), Expect = 9.6e-67
Identity = 133/185 (71.89%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 4   EDDVDMVASDHPNDAV-ELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGSASASQ 63
           + D+DM A+D   DAV EL +MK+RLKEME+EAAALREMQAKVEKEM + QDP S +A+Q
Sbjct: 23  DPDIDMSAAD--EDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQ 82

Query: 64  ANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 123
             KEEVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE E
Sbjct: 83  EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVE 142

Query: 124 AVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIA 183
           AVQEA+ LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V    PYF +
Sbjct: 143 AVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV---PPYFYS 202

Query: 184 PFGYG 188
           P+GYG
Sbjct: 203 PYGYG 202

[Close]

BLAST of Sed0007004 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 128/204 (62.75%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 2   EHEDDVDMVASDHP----NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQDPGS 61
           EH  +    A D      + + +L+DMKKR+KE+E+EA ALREMQAK EK+M + QDP S
Sbjct: 31  EHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-S 90

Query: 62  ASASQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVE 121
              S A KEEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVE
Sbjct: 91  GGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVE 150

Query: 122 FVEPEAVQEAILLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPT 181
           FVE EAVQ +++LNESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V    
Sbjct: 151 FVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--- 210

Query: 182 PYFIAPFGYGKVPRFRMPSRYGPY 202
             F  P+ YG+VPRFR P RY PY
Sbjct: 211 --FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Sed0007004 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-56
Identity = 125/241 (51.87%), Postives = 153/241 (63.49%), Query Frame = 0


Query: 2   EHEDDVDMVASDHP----NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMTSVQ---- 61
           EH  +    A D      + + +L+DMKKR+KE+E+EA ALREMQAK EK+M + Q    
Sbjct: 31  EHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKL 90

Query: 62  ---------------------------------DPGSASASQANKEEVDSRSVFVGNVDY 121
                                            +  ++  S A KEEVDSRS++VGNVDY
Sbjct: 91  VLLIMILLWVYILESFSESMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDY 150

Query: 122 SCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEAILLNESELHGRQL 181
           +CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +++LNESELHGRQ+
Sbjct: 151 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 210

Query: 182 KVTAKRTNIPGMKQYRPRRSNPFMGARSRGPYVAAPTPYFIAPFGYGKVPRFRMPSRYGP 202
           KV+AKRTN+PGM+Q+R  R  PF   R   P V      F  P+ YG+VPRFR P RY P
Sbjct: 211 KVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP-----FYPPYAYGRVPRFRRPMRYRP 265

The following BLAST results are available for this feature:

BLAST of Sed0007004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877304.1	5.1e-94	90.59	polyadenylate-binding protein 2-like [Benincasa hispida]	[more]
XP_011653388.1	5.1e-94	90.59	polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothe...	[more]
XP_008462875.1	6.6e-94	90.10	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA00...	[more]
XP_022140995.1	4.3e-93	89.11	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]
XP_011653386.1	3.6e-92	88.41	polyadenylate-binding protein 2 isoform X1 [Cucumis sativus]	[more]

BLAST of Sed0007004 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	1.0e-73	74.11	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	5.7e-72	71.86	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	2.0e-61	62.75	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	6.1e-34	53.90	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8CCS6	2.2e-31	44.57	Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3	[more]

BLAST of Sed0007004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXZ1	2.5e-94	90.59	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV...	[more]
A0A5A7V2R3	3.2e-94	90.10	Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CHX7	3.2e-94	90.10	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CGQ3	2.1e-93	89.11	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CIE7	2.3e-92	87.92	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0007004 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	7.3e-75	74.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	4.0e-73	71.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	9.6e-67	71.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	1.4e-62	62.75	polyadenylate-binding protein 1	[more]
AT5G51120.2	4.5e-56	51.87	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..68
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 3..198
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 3..198
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 72..143 e-value: 7.14776E-49 score: 152.06
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 72..143 e-value: 2.1E-23 score: 93.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 73..141 e-value: 1.0E-17 score: 63.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 71..147 score: 17.028851
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..144 e-value: 8.4E-30 score: 105.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007004.1	Sed0007004.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding