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Sed0006997 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTTGATGAAGCTCTCCCTCTTTCTTTTCCTCCTAGTTGTCTCCGTCGTCGCCGTTGCTGCTCGTTCCCTCGCCTTCACTAAAAGCACCAAGAACTCGGCCCGTGCCCATGGCGCCACGGACAATGCCTTCTTCGAGGAGCTCACATCGAGACAGATGGCCGAAGACAATGGGCGGCTACTTTCCCAATCTGAAAACGACAAAAAGAACTACAAAGATAAGTTTTTTAGCTATGATGCACTTAGAAAGAACAATATTCCTTGTGGTCGTCATGGTAAAGTTTACTATGATTGTACCAAGAAAGAGAAGGCTAATACTTATCGTCGTGGTTGCACTGCCTCAACTGGTTGCGCTCGATTCACCGATTAA ATGGGGTTGATGAAGCTCTCCCTCTTTCTTTTCCTCCTAGTTGTCTCCGTCGTCGCCGTTGCTGCTCGTTCCCTCGCCTTCACTAAAAGCACCAAGAACTCGGCCCGTGCCCATGGCGCCACGGACAATGCCTTCTTCGAGGAGCTCACATCGAGACAGATGGCCGAAGACAATGGGCGGCTACTTTCCCAATCTGAAAACGACAAAAAGAACTACAAAGATAAGTTTTTTAGCTATGATGCACTTAGAAAGAACAATATTCCTTGTGGTCGTCATGGTAAAGTTTACTATGATTGTACCAAGAAAGAGAAGGCTAATACTTATCGTCGTGGTTGCACTGCCTCAACTGGTTGCGCTCGATTCACCGATTAA ATGGGGTTGATGAAGCTCTCCCTCTTTCTTTTCCTCCTAGTTGTCTCCGTCGTCGCCGTTGCTGCTCGTTCCCTCGCCTTCACTAAAAGCACCAAGAACTCGGCCCGTGCCCATGGCGCCACGGACAATGCCTTCTTCGAGGAGCTCACATCGAGACAGATGGCCGAAGACAATGGGCGGCTACTTTCCCAATCTGAAAACGACAAAAAGAACTACAAAGATAAGTTTTTTAGCTATGATGCACTTAGAAAGAACAATATTCCTTGTGGTCGTCATGGTAAAGTTTACTATGATTGTACCAAGAAAGAGAAGGCTAATACTTATCGTCGTGGTTGCACTGCCTCAACTGGTTGCGCTCGATTCACCGATTAA MGLMKLSLFLFLLVVSVVAVAARSLAFTKSTKNSARAHGATDNAFFEELTSRQMAEDNGRLLSQSENDKKNYKDKFFSYDALRKNNIPCGRHGKVYYDCTKKEKANTYRRGCTASTGCARFTD Homology
BLAST of Sed0006997 vs. NCBI nr
Match: XP_038876152.1 (uncharacterized protein LOC120068449 [Benincasa hispida]) HSP 1 Score: 104.4 bits (259), Expect = 7.3e-19 Identity = 63/123 (51.22%), Postives = 78/123 (63.41%), Query Frame = 0
BLAST of Sed0006997 vs. NCBI nr
Match: XP_022925244.1 (protein RALF-like 31 [Cucurbita moschata] >KAG6595448.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16 Identity = 58/125 (46.40%), Postives = 70/125 (56.00%), Query Frame = 0
BLAST of Sed0006997 vs. NCBI nr
Match: KAG7027448.1 (Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 94.4 bits (233), Expect = 7.5e-16 Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Sed0006997 vs. NCBI nr
Match: XP_022927737.1 (protein RALF-like 19 [Cucurbita moschata]) HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14 Identity = 59/124 (47.58%), Postives = 76/124 (61.29%), Query Frame = 0
BLAST of Sed0006997 vs. NCBI nr
Match: XP_022989014.1 (protein RALF-like 4 [Cucurbita maxima]) HSP 1 Score: 88.2 bits (217), Expect = 5.4e-14 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy Swiss-Prot
Match: Q9FZA0 (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11 Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy Swiss-Prot
Match: Q6NME6 (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10 Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-07 Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy TrEMBL
Match: A0A6J1EBL1 (protein RALF-like 31 OS=Cucurbita moschata OX=3662 GN=LOC111432544 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16 Identity = 58/125 (46.40%), Postives = 70/125 (56.00%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy TrEMBL
Match: A0A6J1EI16 (protein RALF-like 19 OS=Cucurbita moschata OX=3662 GN=LOC111434550 PE=3 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14 Identity = 59/124 (47.58%), Postives = 76/124 (61.29%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy TrEMBL
Match: A0A6J1JN66 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486205 PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy TrEMBL
Match: A0A0A0KCD7 (F3H9.8 protein OS=Cucumis sativus OX=3659 GN=Csa_6G199790 PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14 Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0
BLAST of Sed0006997 vs. ExPASy TrEMBL
Match: A0A6J1EIU0 (protein RALF-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111434547 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 5.8e-14 Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 0
BLAST of Sed0006997 vs. TAIR 10
Match: AT1G28270.1 (ralf-like 4 ) HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12 Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
BLAST of Sed0006997 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 ) HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11 Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 0
BLAST of Sed0006997 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 ) HSP 1 Score: 58.2 bits (139), Expect = 5.6e-09 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0006997 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 ) HSP 1 Score: 57.4 bits (137), Expect = 9.5e-09 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Sed0006997 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 ) HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06 Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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