Sed0006980 (gene) Chayote v1

Overview


Name	Sed0006980
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 1900146 .. 1900546 (-)
RNA-Seq Expression	Sed0006980
Synteny	Sed0006980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTATTCTACAATCCCCAAATCTCCAACTTCTTTGTTACGTATATGGCTTTTTTTGTGATCAAGACGGTGGCCGCGACGGCGACGGCGATCGTTTTAATTCTTCTCTGTCTTTCTTACACGTCGGCAGCGAGGGTCTTAAAGGAGGAGCGGCGGTTGCGAGCTCCGGTGCCTCCTTCGGGTAGAAATCCTTGTACGTTCATTCCCGGGCTCGGTCATGGACGCTGCACATTGGCCGAGGGGGAAGACGGTGAAGGTAGCGGCGGATCCTCGGCCTTCTCGAGCATGAACTTCGATGGGTTTGTGGCGGCTTCTGTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGCTCTTGAACTCATGGGGGGAATAGAATTCTGAATCAAAGTTGAGTTTTG

mRNA sequence

ACTTATTCTACAATCCCCAAATCTCCAACTTCTTTGTTACGTATATGGCTTTTTTTGTGATCAAGACGGTGGCCGCGACGGCGACGGCGATCGTTTTAATTCTTCTCTGTCTTTCTTACACGTCGGCAGCGAGGGTCTTAAAGGAGGAGCGGCGGTTGCGAGCTCCGGTGCCTCCTTCGGGTAGAAATCCTTGTACGTTCATTCCCGGGCTCGGTCATGGACGCTGCACATTGGCCGAGGGGGAAGACGGTGAAGGTAGCGGCGGATCCTCGGCCTTCTCGAGCATGAACTTCGATGGGTTTGTGGCGGCTTCTGTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGCTCTTGAACTCATGGGGGGAATAGAATTCTGAATCAAAGTTGAGTTTTG

Coding sequence (CDS)

ATGGCTTTTTTTGTGATCAAGACGGTGGCCGCGACGGCGACGGCGATCGTTTTAATTCTTCTCTGTCTTTCTTACACGTCGGCAGCGAGGGTCTTAAAGGAGGAGCGGCGGTTGCGAGCTCCGGTGCCTCCTTCGGGTAGAAATCCTTGTACGTTCATTCCCGGGCTCGGTCATGGACGCTGCACATTGGCCGAGGGGGAAGACGGTGAAGGTAGCGGCGGATCCTCGGCCTTCTCGAGCATGAACTTCGATGGGTTTGTGGCGGCTTCTGTGGTTAACCAAACCGAGAAGCAAGATCCTTCTTTGAGCTCTTGA

Protein sequence

MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEERRLRAPVPPSGRNPCTFIPGLGHGRCTLAEGEDGEGSGGSSAFSSMNFDGFVAASVVNQTEKQDPSLSS

Homology

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BLAST of Sed0006980 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22
Identity = 71/113 (62.83%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEE-------RRLRAPVPPSGRNPCTFI 60
           M F V+KT AA   A V ILLC+ + SAARVL  E       R LR  VPPSGRNPC+FI
Sbjct: 1   MPFSVMKTPAA---AFVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGLGHGRCTLAEGED----GEGSGGSSAFSSMNFDGFVAASVVNQTEKQDPSL 103
           PGLG GRCTL+E ED    G G GGSSAF  MNFDGF AA++VN T+KQDPSL
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

[Close]

BLAST of Sed0006980 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEER----------RLRAPVPPSGRNPC 60
           MAF ++KTV     A + I L +   SAARVL  ER           LR PVP S RNPC
Sbjct: 1   MAFSLMKTV-----AFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  TFIPGLGHGRCTLAEGEDGEGS--GGSSAFSSMNFDGFVAASVVNQTEKQDPSLSS 105
           +FIPG   GRCTL+E ++G+ S  GGSSAF  +N DGF AASVVNQT+KQD S+SS
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of Sed0006980 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 60/110 (54.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 1   MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEER----RLRAPVPPSGRNPCTFIPGL 60
           MAF ++KTV     A + I L +   S  R L   R     LR PVP S RNPC+FIPG 
Sbjct: 1   MAFSLVKTV-----AFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGF 60

Query: 61  GHGRCTLAEGEDGEGS--GGSSAFSSMNFDGFVAASVVNQTEKQDPSLSS 105
             GRCTL+E +DG  S  GGSSAF  +N DGF AAS+VNQT+KQD SLSS
Sbjct: 61  SRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of Sed0006980 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 27  SAARVLKEERRLRAP----------VPPSGRNPCTFIPGLGHGRCTLAEGEDGEGS--GG 86
           SAARV+  ER L AP          VP S RNPC+FIPG   GRCTL+E +DG  +  GG
Sbjct: 2   SAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGG 61

Query: 87  SSAFSSMNFDGFVAASVVNQTEKQDPSL 103
           SSA S +N DGF AAS+ N+T+K+DPSL
Sbjct: 62  SSALSGLNADGFAAASMANKTQKKDPSL 89

[Close]

BLAST of Sed0006980 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-05
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 8   TVAATATAIVLILLCLSY-TSAARVLKEERRL----------RAPVPPSGRNPCTFIPGL 67
           T+A  A A++L+   L   T+A R+L EE+ L          R PVPPSG NPCTFIPG 
Sbjct: 12  TMAKWAIAVLLVSCFLEQKTAAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGR 71

Query: 68  GHGRCTLAEGEDGEGS---GGSSAFSSMNFD-GFVAA--SVVNQTEKQDPS 102
             GRCTL+E  D  G      ++AF  +  D G V A  S  N+T+KQD S
Sbjct: 72  NRGRCTLSE-MDVAGQFPRAPAAAFPDIVVDFGAVTAGNSGANETQKQDSS 121

[Close]

BLAST of Sed0006980 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.6e-18
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEER----------RLRAPVPPSGRNPC 60
           MAF ++KTV     A + I L +   SAARVL  ER           LR PVP S RNPC
Sbjct: 1   MAFSLMKTV-----AFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  TFIPGLGHGRCTLAEGEDGEGS--GGSSAFSSMNFDGFVAASVVNQTEKQDPSLSS 105
           +FIPG   GRCTL+E ++G+ S  GGSSAF  +N DGF AASVVNQT+KQD S+SS
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of Sed0006980 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 60/110 (54.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 1   MAFFVIKTVAATATAIVLILLCLSYTSAARVLKEER----RLRAPVPPSGRNPCTFIPGL 60
           MAF ++KTV     A + I L +   S  R L   R     LR PVP S RNPC+FIPG 
Sbjct: 1   MAFSLVKTV-----AFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGF 60

Query: 61  GHGRCTLAEGEDGEGS--GGSSAFSSMNFDGFVAASVVNQTEKQDPSLSS 105
             GRCTL+E +DG  S  GGSSAF  +N DGF AAS+VNQT+KQD SLSS
Sbjct: 61  SRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

[Close]

BLAST of Sed0006980 vs. ExPASy TrEMBL
Match: A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 44/103 (42.72%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 16  IVLILLCLSYTSAARVLKEERRL----------RAPVPPSGRNPCTFIPGLGHGRCTLAE 75
           I+  +LC    SA R L+EE+ L          R PVP SG NPCT+IPG G GRCTLAE
Sbjct: 52  IIFSVLCFRQLSAMRPLEEEQWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRCTLAE 111

Query: 76  -------GEDGEGSGGSSAFSSMNFDGFVAASVVNQTEKQDPS 102
                  G D       +AF       F AAS  N T K+D S
Sbjct: 112 NEMNFAGGHDNVAPAPPAAFPDFMVK-FAAASKDNDTRKKDTS 153

[Close]

BLAST of Sed0006980 vs. ExPASy TrEMBL
Match: A0A5B6Z868 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 40/86 (46.51%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 27  SAARVLKEERRL----------RAPVPPSGRNPCTFIPGLGHGRCTLAEGE---DGEGSG 86
           SA R L+EE+RL          R PVP SG NPCT+IPG G GRCTLAE E    GE   
Sbjct: 28  SAMRPLEEEQRLKKGLPIQSLQRGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGELVA 87

Query: 87  GSSAFSSMNFDGFVAASVVNQTEKQD 100
            +          F AAS  N T+K+D
Sbjct: 88  HAPPAFPDFMVNFAAASKANDTQKKD 113

[Close]

BLAST of Sed0006980 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.9e-04
Identity = 32/67 (47.76%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 39  RAPVPPSGRNPCTFIPGLGHGRCTLAEGEDG----EGSGGSSAFSSMNFDGFVAASVVNQ 98
           R PV PSG NPCT+IPG   GRCTLAE E       G     AF  +    F  AS  N 
Sbjct: 47  RGPVTPSGSNPCTYIPGGKRGRCTLAENESNYSGRVGHAAPPAFPGVMVK-FAPASTAND 106

Query: 99  TEKQDPS 102
           + KQD S
Sbjct: 107 SRKQDGS 112

The following BLAST results are available for this feature:

BLAST of Sed0006980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586324.1	3.5e-22	62.83	hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60782.1	2.0e-17	54.31	hypothetical protein Csa_019261 [Cucumis sativus]	[more]
KAA0063581.1	8.3e-16	54.55	hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790...	[more]
KAG6599331.1	2.7e-14	55.68	hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_021888699.1	8.6e-05	44.14	uncharacterized protein LOC110807772 [Carica papaya]	[more]

BLAST of Sed0006980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ84	9.6e-18	54.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1	[more]
A0A5A7VCY2	4.0e-16	54.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B6Z7Q1	2.9e-06	42.72	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663...	[more]
A0A5B6Z868	1.1e-05	46.51	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1	[more]
A0A6A4KR04	7.9e-04	47.76	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of Sed0006980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF6	SUBFAMILY NOT NAMED	coord: 1..99
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006980.1	Sed0006980.1	mRNA