Sed0006938 (gene) Chayote v1

Overview


Name	Sed0006938
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribosomal RNA-processing protein 17
Location	LG10: 1978752 .. 1982060 (-)
RNA-Seq Expression	Sed0006938
Synteny	Sed0006938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAAGAAACCGAGGAAGGGGGCGAGCTCACACAACCTCGCGCTCGACACATCAAGAAAAGAGCTCTCAAGAACAAAGCCCTTTCCGTCTCTTTCAATGAGAAAGATTTGAGGTTTTTCTTCCAACTCAACCGCCAACTTTGTTAATCGCTTAATTGGGAGTATTGTTCAGTTTTGTTTGATATCGATTTGAATCGAATTGGATTTTGGTTAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCCGAGAAGCAACAAGAGGAAGCTCTTCGCCGGAAGCGCATCGAAATACGCAAAAAGGTTTCACTAAACTTTGCTATTTCTTAAATTAACTTTGTTGATGAGAGTTTTGGAATTGAATTTTTTTTGTTAGGAATATGACTGAAGAAATCTTTTCTGGTAGAGTATTGATTTTTGAACAGCACTGTGCAGAATCATTCTAGAATTAGAATCAAACACCATTAGTTTTACGGAAGATTAAAAATTTCCTTTAGACTCTTGAGATGAGCCTGGTTGTGTGCTGAAGATACCGATGTTGTTTTTTCACCTTGGATTTGTCCATGGTTATAAGAATTTATTACAAACTTTGTTTCAAATATCACATTGGGTATTTAGGAGACTTGCATTTTATATCAATTTCAATGAGCTGAAGTTAATGATGTTTGAACTTAGTTGTACATTTATGCAATTAAAAAAAAAAAAAAAAAATCAAGGTTTCATGGAGAAAATGAAAGAATGTATCATGTATAAGAACATATGATCCTACCAAAAAGGATTGCAATCCAAAAAATGAAACATAGCTAATAATTGATAAAAAAAAAGCCCCTTAGCCATGAGGTTCAAAGCAAGGCATTGAACAGCCAACAAGAGCAGTAGCTTAAGCGGCATCAATGTATACCTAATAACCTAGAGGTCTTAGGTTTGAGTCTTCCCCACTCCCCGATTGTTGTGATCTCAAAAGCAAGGCATTGAACCTGTTAAGAATAACTCCCATAAGTCTCCTCCAAATCTCTCATTACATCTCTGAAAGAGTACCATTCCTCTAAAGGCATATCTCTAAAAGAATACTGAAGAAACAAGTCTACCAAAGAATTTTGCTCTCTTCAAGGGGGAAACAACAAAATTTACCACAACAAAGCCCCACAATCCCTGCTTGTTTCTTTTATTCAGTTTGAGAACAAGGATGCATAATTTATCTATCTTAAGAAGTAGAACTATCACATCATTTCCTCTGAGAAGTCTTCACTATAGCATCTGGGATAAATTTTCTGAAAGTCCTAAATTATCTTGCAGAGAAAATTAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCCGATGACCGCCCAGTTGATGAGCAGAATGACGATCACGTGGGCGAGGATGAGGATGAGGAGCCATTGGCACCAATTTCTGGTATTCTTCTCACAATTTCAAATTACAATATTAAATGAATGTTACCATTTGTACCAATTTTCTTCGAACACTGGTCTTTTCAATTAACTAAAGTATCCTTAAAAAGCAGGTCAGATATTATTTCTTTTTAAAGGGAAGCTAGTGGTTGAAAACTTGGGCTTTGAGGGGATGCTTGCCTCAAGGTCCTAGGTTCGAGACTCACCTGTGACATTACTAATAATACTTGATAAGTATTTTCAAGAAAAAGGGAAGCTAATTATGATACATGTTTATTTAAAAACACAGTCAACTTGAAATAGTATCCGCTAACTAAACACTCGAACTGTCATCGTTACATGTAGCATAATTTTGATCCAAACTTGCTTTCGGGTTTTGGTTTTCTCTATAGAGACAACAACGTATGACAGTGGAAATATCAAAGTGACTGTGACGACAAGTGAGGTATGTCGTGAAGAAGAAATCGATCCGACTGACAAGCCAGCAACAAACCAACTGTTTGCAAAGGATAAGAAGCACAACCTGCCAGTTACCAAAAAGAAGCTGTTGAAGAAAGTTGCAAGACAGAAGTCAAAGCCAAAGCCCCGAAGTAAAAGAGACAAAAGGAAAGGAGGAAAAAAGAAAAATAGGTAATTATCCCAAGTGTTTTACTCACTCTTTATTAAATGTTTGATGTGATGATTTATATGTTATCTCACAAAGGATATGGTGTGATCTTAAGCATGGGCTGTAGGGAATTTGAGTGTTTTGTATTACTTTGTAAAACTTTGGTCACTTTTTAAACTTGAAGTGCAATCTTTATGAGAAGCTGAAAAACATTAGGTCTCAACTCATTTATTATTTATCTGAAAGTTCTTGTATTACTTCGTTGAAAGTGTGTATATGTCTGATGATATACAATGCCAAATTAGGCCTCAGTTGTTGTGGCAATGGGCAAAGGATTAAAATGGATAGAAATTAGAACCTGCTACATTTGAGGTTAAATAGATCAAACTGAACTTTGAGAGTTAAATCGAATTATGTTCTAAAAAGAAATTACTTTTCCAATATTAATTTAAAATGCTAAATTGAATACTTTTCATTAATTAAAAAAAAAAAAAAAAAAAATCAATTTTCCAATATTATTCTGACTTTTCATTAATAAAGAGGATCAATCGCTTCTAAACAACTATCCCACCTCTAGGGTGTTGATTTTTTCTAAAATTTAAGTGATAGAAACGACCTTTTCAATTTAACTTGTATCTTTGGTGACAGGAAAAAACCAAAGATTAGGCATAAAAGTTTGTTAGTGTAATGAACAGTGTTTTTTTTGTTTTGTTGTTGTTGTTGTTGAAACAAACCAAACCTCATTAATCATCAAAACAATGCACACAACAACCATCCCTAAAAAGGTAAATCAAAACATAACAATGAAATCCAAAAAACATATTCCCTAAAAAGGTAAATCAAAACATAACAGTTGAACTTGAACCACAACTCGGGCAAAGACAAAATAAAAGACGAAAAGTTGAGAATTAAGTAGCTTCTAAAACGATCTAGAATACCTATCAAACCGATTGATTTACATAAAGAAATGGTAAATCCCAACGTAGAAAGTCAGTGTAATGAACAGTGTTAACAAAAAGAAAATATTACAAAAAAAATTATTATAATATAGATTATGATAACCTGCATGAATATTATTATAACAAGACTATGATAGAATTATAACAAGAATATGATAGAGTTAGAAGAGTATTACAGTTAAGGTGAGAGGATATGAATTAATTCAATAATTATTATAACCGTTGACCCGAATACAAATTGAGTTATTCTTTTTGCAACAGTTGTCGAACAAAAAAGACATTCAGGCTACATAAATACACATAA

mRNA sequence

ATGGCGAAGAAAGAAACCGAGGAAGGGGGCGAGCTCACACAACCTCGCGCTCGACACATCAAGAAAAGAGCTCTCAAGAACAAAGCCCTTTCCGTCTCTTTCAATGAGAAAGATTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCCGAGAAGCAACAAGAGGAAGCTCTTCGCCGGAAGCGCATCGAAATACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCCGATGACCGCCCAGTTGATGAGCAGAATGACGATCACGTGGGCGAGGATGAGGATGAGGAGCCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAATATCAAAGTGACTGTGACGACAAGTGAGGTATGTCGTGAAGAAGAAATCGATCCGACTGACAAGCCAGCAACAAACCAACTGTTTGCAAAGGATAAGAAGCACAACCTGCCAGTTACCAAAAAGAAGCTGTTGAAGAAAGTTGCAAGACAGAAGTCAAAGCCAAAGCCCCGAAGTAAAAGAGACAAAAGGAAAGGAGGAAAAAAGAAAAATAGTTGTCGAACAAAAAAGACATTCAGGCTACATAAATACACATAA

Coding sequence (CDS)

ATGGCGAAGAAAGAAACCGAGGAAGGGGGCGAGCTCACACAACCTCGCGCTCGACACATCAAGAAAAGAGCTCTCAAGAACAAAGCCCTTTCCGTCTCTTTCAATGAGAAAGATTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCCGAGAAGCAACAAGAGGAAGCTCTTCGCCGGAAGCGCATCGAAATACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCCGATGACCGCCCAGTTGATGAGCAGAATGACGATCACGTGGGCGAGGATGAGGATGAGGAGCCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAATATCAAAGTGACTGTGACGACAAGTGAGGTATGTCGTGAAGAAGAAATCGATCCGACTGACAAGCCAGCAACAAACCAACTGTTTGCAAAGGATAAGAAGCACAACCTGCCAGTTACCAAAAAGAAGCTGTTGAAGAAAGTTGCAAGACAGAAGTCAAAGCCAAAGCCCCGAAGTAAAAGAGACAAAAGGAAAGGAGGAAAAAAGAAAAATAGTTGTCGAACAAAAAAGACATTCAGGCTACATAAATACACATAA

Protein sequence

MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEEPLAPISETTTYDSGNIKVTVTTSEVCREEEIDPTDKPATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKPRSKRDKRKGGKKKNSCRTKKTFRLHKYT

Homology

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BLAST of Sed0006938 vs. NCBI nr
Match: XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 2.8e-71
Identity = 161/198 (81.31%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M + + EEG EL QP ARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ
Sbjct: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQ 68

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHV--GEDEDEEPLAPISET 120
           QEEA+RRKRIE RKKR+LEKDLVL+GGVLP DRPVDE+NDDH    EDE+E+PLAP SET
Sbjct: 69  QEEAIRRKRIEARKKRRLEKDLVLYGGVLPADRPVDEENDDHEEGEEDEEEKPLAPFSET 128

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           TTYDSGNIKVTV TSEV REEEIDP DKP  AT QLFAKDKKHNLPVTKKK  KKVA+Q+
Sbjct: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAKQR 188

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+PK RSKRDKRKG KKK
Sbjct: 189 SRPKARSKRDKRKGKKKK 206

[Close]

BLAST of Sed0006938 vs. NCBI nr
Match: KAG7026594.1 (hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 5.3e-70
Identity = 163/198 (82.32%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEE--PLAPISET 120
           QEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQNDD    DEDEE  PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           TTYDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 5.3e-70
Identity = 162/198 (81.82%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDD--HVGEDEDEEPLAPISET 120
           QEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQNDD     EDE+E+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           TTYDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 1.2e-69
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDD--HVGEDEDEEPLAPISET 120
           QEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQNDD     EDE+E+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           T YDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+K
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. NCBI nr
Match: KAG6594625.1 (hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-69
Identity = 162/198 (81.82%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEE--PLAPISET 120
           QEEA RRKRIE RKKRK+EK+LVLHGGVLP DRPVDEQNDD    DEDEE  PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           TTYDSGNIKVTVTTSEV R+EEI+P DKP  +T+QL AKDKKH+LPVTKKK  KKVAR+K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEINPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E EEGG LTQP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDD--HVGEDEDEEPLAPISET 120
           QEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQNDD     EDE+E+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           T YDSGNIKVTVTTSEV R+EEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+K
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69
Identity = 160/198 (80.81%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K E  EGG LTQP +RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDD--HVGEDEDEEPLAPISET 120
           QEEA RRKRIE RKKRK+EKDLVLHGGVLP DRPVDEQNDD     EDE+E+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVCREEEIDPTDKP--ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           TTYDSGNIKVTVTTSEV REEEIDP DKP  +T+QL AKDKKH+LP+TKKK  KKVAR+K
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
           S+ K RSK DK+KG KKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Sed0006938 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.2e-69
Identity = 157/196 (80.10%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K + +EGGEL QPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEEPLAPISETTT 120
           QEEA RRKRIE+RKKRK EK+LVL+GG+LP DRPVDEQNDDH  E+E+E+P APISETTT
Sbjct: 61  QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDH--EEEEEKPFAPISETTT 120

Query: 121 YDSGNIKVTVTTSEVCREEEIDPTDK--PATNQLFAKDKKHNLPVTKKKLLKKVARQKSK 180
           YDSGNIKVTV TSEV R+ EI P DK   AT QL AKDKKHNLP+TKKK  KKVA+QKS+
Sbjct: 121 YDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180

Query: 181 PKPRSKRDKRKGGKKK 195
           PKPRSKRDK+KG KKK
Sbjct: 181 PKPRSKRDKKKGRKKK 194

[Close]

BLAST of Sed0006938 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.8e-68
Identity = 156/196 (79.59%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K + EEGGEL QP ARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEEPLAPISETTT 120
           +EEA+RR RIE RKKRKLEKDLVL+GGVLP DR VD+QNDD   EDE+EEPLAP SE  T
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQ--EDEEEEPLAPFSEART 120

Query: 121 YDSGNIKVTVTTSEVCREEEIDPTDKPAT--NQLFAKDKKHNLPVTKKKLLKKVARQKSK 180
           YD+GN+KVTVTTSEV RE EIDP DKP T   QL  KDKKHNLP+TKKKL KKVA+Q+S+
Sbjct: 121 YDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSR 180

Query: 181 PKPRSKRDKRKGGKKK 195
           PK RSKRDK+KG KKK
Sbjct: 181 PKLRSKRDKKKGRKKK 194

[Close]

BLAST of Sed0006938 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-68
Identity = 154/198 (77.78%), Postives = 170/198 (85.86%), Query Frame = 0


Query: 1   MAKKETEEGGELTQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           M K + EEGGEL QP ARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEALRRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEEPLAPISETTT 120
           +EEA+RR RIE RKKRKLEKDLVLHGGVLP DR VD+QNDD    +E+EEPLAP+SE TT
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQ--GNEEEEPLAPLSEATT 120

Query: 121 YDSGNIKVTVTTSEVCREEEIDPTDKP----ATNQLFAKDKKHNLPVTKKKLLKKVARQK 180
           YD+GN+KVTVTTSEV RE+EIDP DKP     T QL  KDKKHNLP+TKKKL KKVA+Q+
Sbjct: 121 YDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 181 SKPKPRSKRDKRKGGKKK 195
            +PK RSKRDK+KG KKK
Sbjct: 181 GRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of Sed0006938 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-33
Identity = 101/188 (53.72%), Postives = 124/188 (65.96%), Query Frame = 0


Query: 7   EEGGELTQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAL 66
           EE G L  P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 67  RRKRIEIRKKRKLEKDLVLHGGVLPDDRPVDEQNDDHVGEDEDEEPLAPISETTTYDSGN 126
           RRKRIE RK RKLE+ +V   G   +D    E  D+   EDE+ EP A  S TT YD+G 
Sbjct: 68  RRKRIEARKNRKLEELMVAGNG---EDNEDGEAEDEVDAEDEEAEPDASTSATTMYDTGE 127

Query: 127 IKVTVTTSEVCREEE----IDPTDKPATNQLFAKDKKHNLPVTKKKLLKKVARQKSKPKP 186
           +KVTVTTSE+ REEE     + T    +        K  +PV K K +K+ +R++S  K 
Sbjct: 128 LKVTVTTSEISREEEEPIRKEKTQSTESGSTAKASTKQPVPVRKTKPMKQ-SRRRSTTKT 187

Query: 187 RSKRDKRK 190
             KRDK+K
Sbjct: 188 MKKRDKKK 191

The following BLAST results are available for this feature:

BLAST of Sed0006938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881021.1	2.8e-71	81.31	nucleolar protein 12 [Benincasa hispida]	[more]
KAG7026594.1	5.3e-70	82.32	hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023517913.1	5.3e-70	81.82	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
XP_022926799.1	1.2e-69	81.31	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
KAG6594625.1	2.0e-69	81.82	hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0006938 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG67	5.7e-70	81.31	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A6J1KRQ7	1.3e-69	80.81	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]
A0A6J1CL67	2.2e-69	80.10	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3C1A3	1.8e-68	79.59	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]
A0A0A0KYB4	3.1e-68	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1	[more]

BLAST of Sed0006938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	2.5e-33	53.72	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..132
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 21..122 e-value: 9.7E-17 score: 61.7
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 1..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006938.1	Sed0006938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding