Sed0006872 (gene) Chayote v1

Overview


Name	Sed0006872
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L31
Location	LG13: 21417723 .. 21418808 (-)
RNA-Seq Expression	Sed0006872
Synteny	Sed0006872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACTCATCTCATAATCTTCTATTCCTCTCCAACTTATCCTCATCTTCTCTTCACCGCAATCGCAATGGCGCTAAACCTAACCAATTCCTTCCTCCAACGGCCCATTTTTCCGGCGACCGCGCCGCCGACGAACAAGGTAACTTCCTCCCTTCTCTCCCTCCCAATTTCCGGCGACGGCGGCTTTCCATTTCAATATCCCTAAATTTCGACCTAATTTTCAGGAATTCAGATCCAGTACTCCCCGGCCGGTGGTGACCTGCCGGAAAAAGGATCTGCATCCGCAATTTTACGAGGATGCTAAGGTTTACTGCAACGGAGAGTTGGTGATGACGACCGGCGGGACTCAGAAAGAGTATTCCGTCGATGTTTGGTCCGGAAATCATCCGTTCTATTTGGGCAGCCGCTCGGCTCTGCTAGTCGACGCCGATCAGGTTGAGAAATTCCGGAAGAAATTTGGAGAACTTACGCAATTGATGGAGATTCCTGTTCTTAAAGGTGAAATTATTATGCCCACCAAACGCAAATCTGGGAAAGGGAAGAAGAAGTAGAGGATTGTGAAGGGTTCGATTTAGCCTGGTAATCACTTCAATTTCTAATGCGTATTGAGATTTTTTATTCTTCTATTGCATTATGTATCTGTGTAATTTAGCCTAATCGAACTGTTTGTTGCATTGGATTGCATTGCTCTGTGTTGAATGCTTGATGTTGATAAATAGTTTAACATTGGTTGAGTATTCATGAAAGGCTTAGTGACCTAGTAGTTTCATTGTTCCGTGATCGTAGAGTTCAACACCACGGTTTCGAGTTTGATTAGCTAAATCGGTATTTAGCTCTCATATTATTTGAGACTATTAGTAACCTCTATGGGGTGATTGGATTTTGGAGTTGAAAAGAAGAGAGGAGAGAAAGTGGAAAAGGAAGATGAAGTTGAGTGATTTAGAGATATGAAGTACTTGATTAGAGATTGATATTTTAGAAAGGAGATGTTGTAAAAAGTATATATTTTATATTATTTCTTTGAATGTAATCATTACAAATTTATATTAATTAATAAATTTTATTTTATATTATGTGGTTGAAAA

mRNA sequence

AAAGAACTCATCTCATAATCTTCTATTCCTCTCCAACTTATCCTCATCTTCTCTTCACCGCAATCGCAATGGCGCTAAACCTAACCAATTCCTTCCTCCAACGGCCCATTTTTCCGGCGACCGCGCCGCCGACGAACAAGGAATTCAGATCCAGTACTCCCCGGCCGGTGGTGACCTGCCGGAAAAAGGATCTGCATCCGCAATTTTACGAGGATGCTAAGGTTTACTGCAACGGAGAGTTGGTGATGACGACCGGCGGGACTCAGAAAGAGTATTCCGTCGATGTTTGGTCCGGAAATCATCCGTTCTATTTGGGCAGCCGCTCGGCTCTGCTAGTCGACGCCGATCAGGTTGAGAAATTCCGGAAGAAATTTGGAGAACTTACGCAATTGATGGAGATTCCTGTTCTTAAAGGTGAAATTATTATGCCCACCAAACGCAAATCTGGGAAAGGGAAGAAGAAGTAGAGGATTGTGAAGGGTTCGATTTAGCCTGGTAATCACTTCAATTTCTAATGCGTATTGAGATTTTTTATTCTTCTATTGCATTATGTATCTGTGTAATTTAGCCTAATCGAACTGTTTGTTGCATTGGATTGCATTGCTCTGTGTTGAATGCTTGATGTTGATAAATAGTTTAACATTGGTTGAGTATTCATGAAAGGCTTAGTGACCTAGTAGTTTCATTGTTCCGTGATCGTAGAGTTCAACACCACGGTTTCGAGTTTGATTAGCTAAATCGGTATTTAGCTCTCATATTATTTGAGACTATTAGTAACCTCTATGGGGTGATTGGATTTTGGAGTTGAAAAGAAGAGAGGAGAGAAAGTGGAAAAGGAAGATGAAGTTGAGTGATTTAGAGATATGAAGTACTTGATTAGAGATTGATATTTTAGAAAGGAGATGTTGTAAAAAGTATATATTTTATATTATTTCTTTGAATGTAATCATTACAAATTTATATTAATTAATAAATTTTATTTTATATTATGTGGTTGAAAA

Coding sequence (CDS)

ATGGCGCTAAACCTAACCAATTCCTTCCTCCAACGGCCCATTTTTCCGGCGACCGCGCCGCCGACGAACAAGGAATTCAGATCCAGTACTCCCCGGCCGGTGGTGACCTGCCGGAAAAAGGATCTGCATCCGCAATTTTACGAGGATGCTAAGGTTTACTGCAACGGAGAGTTGGTGATGACGACCGGCGGGACTCAGAAAGAGTATTCCGTCGATGTTTGGTCCGGAAATCATCCGTTCTATTTGGGCAGCCGCTCGGCTCTGCTAGTCGACGCCGATCAGGTTGAGAAATTCCGGAAGAAATTTGGAGAACTTACGCAATTGATGGAGATTCCTGTTCTTAAAGGTGAAATTATTATGCCCACCAAACGCAAATCTGGGAAAGGGAAGAAGAAGTAG

Protein sequence

MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKKK

Homology

[Close]

BLAST of Sed0006872 vs. NCBI nr
Match: XP_023523361.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 9.1e-60
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRP  PA APP NKE  +   RPVVTCRKKD+HPQFYEDAKVYCNGELVM
Sbjct: 48  MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 107

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI++
Sbjct: 108 TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 167

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 168 PTKRKSGGKGKKK 180

[Close]

BLAST of Sed0006872 vs. NCBI nr
Match: KAG6608549.1 (50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.4 bits (612), Expect = 9.1e-60
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRP  PA APP NKE  +   RPVVTCRKKD+HPQFYEDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRKKDIHPQFYEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI++
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of Sed0006872 vs. NCBI nr
Match: XP_022975559.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 4.5e-59
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEII+
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of Sed0006872 vs. NCBI nr
Match: KAA0041569.1 (50S ribosomal protein L31 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 5.9e-59
Identity = 118/134 (88.06%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGEL 60
           MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGEL
Sbjct: 53  MALNLTNSFLQLQRPISPAVAPPKHKESGARSHRPVVTCRKKDLHPQFYEDAKVYCNGEL 112

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEI 120
           VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI
Sbjct: 113 VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 172

Query: 121 IMPTKRKSGKGKKK 133
           I+P+KRKS KGKKK
Sbjct: 173 ILPSKRKSAKGKKK 186

[Close]

BLAST of Sed0006872 vs. NCBI nr
Match: KAG6591302.1 (50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.7 bits (605), Expect = 5.9e-59
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSRRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI++
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot
Match: P82249 (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 2.7e-46
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 1   MALNLTNSFLQR-PIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELV 60
           M L L+N FL + P  P T   T  +  SST RP  +CRK D+HP+F EDAKVYCNGELV
Sbjct: 1   MVLTLSNQFLAKIPATPKTL--TLPKTSSSTLRPQWSCRKSDIHPEFREDAKVYCNGELV 60

Query: 61  MTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEII 120
           MTTGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKFRKK+GELTQ+MEIPVLKGEII
Sbjct: 61  MTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEII 120

Query: 121 MPTKRKSGKGKKK 133
           +P K+KS K KKK
Sbjct: 121 LPPKKKS-KAKKK 130

[Close]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot
Match: Q9FWS4 (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.8e-46
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 1   MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYED 60
           MA++L NSFLQ           +P+  A         RSS     +TCRKK+LHP+F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  AKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLM 120
           AKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  L+++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 121 EIPVLKGEIIMPTKRKSG-KGKKK 133
           EIPVLKGEIIMPTK+  G KGKKK
Sbjct: 121 EIPVLKGEIIMPTKKSKGPKGKKK 144

[Close]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot
Match: Q110D6 (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 39  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K D+HP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNHP++ G++   ++D + +VE+
Sbjct: 3   KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGELTQLMEIPVLKGEIIMPTKRKSGKGKK 132
           F +K+ +     E    K      TK K GKGKK
Sbjct: 63  FMRKYSK----QEGSGSKSNKSKSTKSKKGKGKK 90

[Close]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot
Match: Q31L35 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmE PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 39  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot
Match: Q5N0T7 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmE PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 39  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDAD-QVEK 98
           K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   ++D + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 99  FRKKFGEL 106
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]

BLAST of Sed0006872 vs. ExPASy TrEMBL
Match: A0A6J1IKY2 (50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEII+
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIIL 120

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of Sed0006872 vs. ExPASy TrEMBL
Match: A0A5A7TJN6 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00310 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.9e-59
Identity = 118/134 (88.06%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGEL 60
           MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGEL
Sbjct: 53  MALNLTNSFLQLQRPISPAVAPPKHKESGARSHRPVVTCRKKDLHPQFYEDAKVYCNGEL 112

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEI 120
           VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI
Sbjct: 113 VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 172

Query: 121 IMPTKRKSGKGKKK 133
           I+P+KRKS KGKKK
Sbjct: 173 ILPSKRKSAKGKKK 186

[Close]

BLAST of Sed0006872 vs. ExPASy TrEMBL
Match: E5GCI4 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.9e-59
Identity = 118/134 (88.06%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGEL 60
           MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGEL
Sbjct: 28  MALNLTNSFLQLQRPISPAVAPPKHKESGARSHRPVVTCRKKDLHPQFYEDAKVYCNGEL 87

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEI 120
           VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI
Sbjct: 88  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 147

Query: 121 IMPTKRKSGKGKKK 133
           I+P+KRKS KGKKK
Sbjct: 148 ILPSKRKSAKGKKK 161

[Close]

BLAST of Sed0006872 vs. ExPASy TrEMBL
Match: A0A6J1FCM8 (50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.9e-59
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MALNLTNSFLQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGELVM 60
           MALNLTNSFLQRPI P  APP  KEF + + R VVTCRKKDLHPQF+EDAKVYCNGELVM
Sbjct: 1   MALNLTNSFLQRPISPVVAPPKKKEFGARSHRAVVTCRKKDLHPQFHEDAKVYCNGELVM 60

Query: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEIIM 120
           TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI++
Sbjct: 61  TTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVL 120

Query: 121 PTKRKS-GKGKKK 133
           PTKRKS GKGKKK
Sbjct: 121 PTKRKSGGKGKKK 133

[Close]

BLAST of Sed0006872 vs. ExPASy TrEMBL
Match: A0A1S3CRJ2 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503925 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.9e-59
Identity = 118/134 (88.06%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MALNLTNSF--LQRPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYEDAKVYCNGEL 60
           MALNLTNSF  LQRPI PA APP +KE  + + RPVVTCRKKDLHPQFYEDAKVYCNGEL
Sbjct: 28  MALNLTNSFLQLQRPISPAVAPPKHKESGARSHRPVVTCRKKDLHPQFYEDAKVYCNGEL 87

Query: 61  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLMEIPVLKGEI 120
           VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL+QLMEIPVLKGEI
Sbjct: 88  VMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEI 147

Query: 121 IMPTKRKSGKGKKK 133
           I+P+KRKS KGKKK
Sbjct: 148 ILPSKRKSAKGKKK 161

[Close]

BLAST of Sed0006872 vs. TAIR 10
Match: AT1G75350.1 (Ribosomal protein L31 )

HSP 1 Score: 184.5 bits (467), Expect = 5.5e-47
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 1   MALNLTNSFLQ-----------RPIFPATAPPTNKEFRSSTPRPVVTCRKKDLHPQFYED 60
           MA++L NSFLQ           +P+  A         RSS     +TCRKK+LHP+F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 61  AKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELTQLM 120
           AKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL+VDADQVEKFRK+F  L+++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 121 EIPVLKGEIIMPTKRKSG-KGKKK 133
           EIPVLKGEIIMPTK+  G KGKKK
Sbjct: 121 EIPVLKGEIIMPTKKSKGPKGKKK 144

The following BLAST results are available for this feature:

BLAST of Sed0006872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523361.1	9.1e-60	88.72	50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6608549.1	9.1e-60	88.72	50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022975559.1	4.5e-59	88.72	50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima]	[more]
KAA0041569.1	5.9e-59	88.06	50S ribosomal protein L31 [Cucumis melo var. makuwa]	[more]
KAG6591302.1	5.9e-59	87.97	50S ribosomal protein L31, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Sed0006872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82249	2.7e-46	71.43	50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 P...	[more]
Q9FWS4	7.8e-46	65.28	50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
Q110D6	1.2e-17	47.87	50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 ...	[more]
Q31L35	2.6e-17	58.82	50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80...	[more]
Q5N0T7	2.6e-17	58.82	50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]

BLAST of Sed0006872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKY2	2.2e-59	88.72	50S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111475090 PE=3 SV=1	[more]
A0A5A7TJN6	2.9e-59	88.06	50S ribosomal protein L31, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
E5GCI4	2.9e-59	88.06	50S ribosomal protein L31, chloroplastic OS=Cucumis melo subsp. melo OX=412675 P...	[more]
A0A6J1FCM8	2.9e-59	87.97	50S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111442881 PE=3 SV=...	[more]
A0A1S3CRJ2	2.9e-59	88.06	50S ribosomal protein L31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503925...	[more]

BLAST of Sed0006872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75350.1	5.5e-47	65.28	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002150	Ribosomal protein L31	PRINTS	PR01249	RIBOSOMALL31	coord: 68..83 score: 49.69 coord: 39..56 score: 33.33
IPR002150	Ribosomal protein L31	PFAM	PF01197	Ribosomal_L31	coord: 39..103 e-value: 7.1E-17 score: 61.4
IPR002150	Ribosomal protein L31	TIGRFAM	TIGR00105	TIGR00105	coord: 39..104 e-value: 3.1E-15 score: 54.0
IPR002150	Ribosomal protein L31	PANTHER	PTHR33280	50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC	coord: 32..132
IPR042105	Ribosomal protein L31 superfamily	GENE3D	4.10.830.30	Ribosomal protein L31	coord: 39..106 e-value: 2.2E-17 score: 64.9
None	No IPR available	PANTHER	PTHR33280:SF5	50S RIBOSOMAL PROTEIN L31	coord: 32..132
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 39..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006872.1	Sed0006872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome