Sed0006860 (gene) Chayote v1

Overview


Name	Sed0006860
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 3724620 .. 3728278 (+)
RNA-Seq Expression	Sed0006860
Synteny	Sed0006860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTGTATTGTCTGGAAAGGAAAGAGAAGTTGAGCTTAAATCAGTCAAGAAGATGGTGGGAGTAGAGCCATGCACGATCATAGTACCTTTTGGCTTCGATTTTGAGGTGCGTACATACAATATTATACAATAGTTTATGGAATATACATAATCCATTGTTGAATAATGGACTTATTTGTAGAACTTTGAGGGCAGAGACAAGGAAAATACTGTAGAAGAATACAGTAATCCTAATGGAGATGAAGCTTCAAGTGAAGAGGATAAGAATTTAAATGCAGATGAAATGCAAGAAGGGGAAAATTTGGAGGAGAATATTGAAAACTCAACAGACGAAGTATGTGTTAAATTCTTTTTGTAACAAGTTGTTTAAGTGAATGCCATAGTTTAATAGAAAATATTTATTATATTCGGCAGGAAGATAACATACCGATTACTTTGAGAAGGCGAAAAGTGAATGAAGAAGCTAAGGAGTCCATTCAGAAGACACGAACAGAATGCAATGAAACAGAGAGTATAAAACAAAATATTGTGACTAGAGGTACTGACAAGACTGTAGGTACAAAGGAGTCTACAAAAACAAAAGGTCGAGAGTTTATCAAGTTGAGGGTGAAGCGCAAAAAGAAGGAGGAAGATGAGTGTACTGTGGGAACAAAGGTATATTTCCGTTCATAATGTAATGATATATGTTTTTAGAAGTGTTGGTAATTATCTTCTATATGTAGAAGCGTAAGGGTGTGACTGAAATTGAGAAGGGGAAAAGGAAGGTTGGAGACAATGAAGTACATACATTGTAATACTGTATTATGAAATGATAAAATGATGAAGGATTCTGTTATGAGATGATTGTTCTTTTGGAATTATAGGATGTACATCGAGTAAGTTCGAGCAAGAAACGACGTATGATTATTGATGAATCTGGCTTAGAAGAATCAACACCGCAGGTAACAAACTGTATAGTTGATATGTATTCTAAATAAAATAGGATATTGTATGGTAATGAAACACTCTGCCTTAATGATTTCAGAAGAAAAGAACAAGAATAGAAATTGAGGTTAACTCGAATCTAGGAAAGAGGAGTCGAAGGAGTGAATGTGTAACACCTTCAAAAAAGACTGGAGACAAGGGTGCGAACGGGAACGGGAAGGACAAAAAATACAAGGTACATACTATACAGTACAATATATTATACATAGTATTGTATTTTCAGTTTAGTCATTCTTTGAATTTCTGTACAAACAGGCAGCACCCTTGCTAATACCACGTTCAGAGTGGAATTTGAAACAGAAAGTAAATATTTTTGCAACTTATGACACAATAAAGCAAATAAATTATAAGTTGACTATGAAACAAAGGGCAAAGTTTAAAGAAGGAATATTCTGGAGGTTTTTGGACATAGACATTAAAAGGTTCCAATCACAACTGTTAAACTCATTTATTAGGAGATTGTGCAAGTCACCTAAAAAGGACGAACTGTGGTTCAATCTGGAGGGTAGAGTTGTAAAGTTTGGAATTGGGGAGTTTGCTCAGATAACATGATTAAATTGTGGGGACGTAGTAGAGGTGGACGATAGAAAATTGAAGGGAGGTTTATGAAGAAATATTTCCCGAACAAGAAATCGATAACGAGAACAGACATTATAGACCTTTTTAAGAATGGTAGAAATATACATGAAAATCATATGGTCCGTCTCTCACAGTTGTATTGCTTTGAGTGCTTCATCGATGCGAAACACTTCAAACAGAATGTGGACAACGAGCGTTTGCTGCTTTTAGAGGATGAGGAACAATTTAACAAACATCATTGGGGACGCATCGCTTTTGATACAACGATAAGGTTTATAAAAAATGCCGTCCAACACCCTACTTCTTGTACAATCGGTATAGGGGGGGTTTCCATATGCCATTCTAATATTTTCATATGAGTGCATTCCTCTAATATCTCACGAATCAAATATGTTTGCACTACGTAAGGGGTACAATCAACCATTGATGATTAATTGGGAATGTGACGGGTAACCAAAGTGGAAGGAGCTGCAAAAAAGAATTTTTGAAAACAATAAGGTATTGTTTTGTAATAATGATTTTTGGTACTTACTATTTTATAAATTATGTTATTACTGATTTTCTGAAAATGTAGTTTGAGTTTGTTGAGTTGGAAAAGGGATCATATGAGAACAAATTGACAAAGAGCAATGAGGAAGAAAAAGTAAGTATTTTATATAGACTGTACTGTTCGTTATCATCTGTTCGATGTAGGGTCTTGTATGTATAATCTGTGTATTTCAAGAAGATACAATATCTTCATCTATGTATTGTTCAGATTACTGTAAATTAAGGGTTTAAAAAACATGGGATACTGTATGTTCTTATACATTAGGGAGTTTAATATCGTATGTTCTGCAAGTATATTGTTTATATATTGTTGGAAACTTATTGAAGATACTGTATAAACTTTGTGCCTTTATTGGATAAACAGGACGATGAGACATCAGAGGATTTTGAAAAATGGTTTGAGAAAGAGGAGGATGAAGTTTACGAGGAGACAATAAAAGATGGAAGAAGAGTGGATTGTGGTGAGACTTCAAAGGGAACTGATCGGGAAATGACAGATGAAGTCCAGAGAAATGATGAAGTCATAGGAGAGATTGAACGTACATCAAAAGAAATTAATACCAGTGGTATTAAAGATGTGTTAGAAAGTGTTCAAAAGCTTTCTGATTATGTGAAGTCTTCCTTTGAAAGTGTGAATAAAAGGATGGATGAAATGTGGACAGTTCTTAATGAAATATCTGGTGACATCAATAGTAGGAAAGTGAGTAGAACAAGTGATGATGCAATGGAGGATGAGAAAAGAGAAGATGATGATGATGATGATGGTGGTGGTGGAGATAGAGATGGAGATGGAGATGGATTGGACAGAATAAATGATGATAATTGGGAGGGTGGAGAAAAGATTGGTGGTGATGGGTCACATGATGAAGATAGAGGCGGAGAAGGGAAATTACATGGAGGAAATGTTGTGGACAAAGTTGGTGAAAACACAACATTAGAGGTACATATTAATCTAGTTTTACAATATATATGGATGCGGTAATATACAATGTTGTTTATACAATATGTAATATATTAACTGCATCTGGTATTATTGTGTTTTGTTGATGTAGTTAAAAGGAAAACGAATATTTTCTGATTTTAGACATGCAAAGAGGGCAACTCGTAAAAAGAAACCAGCAAAGTGTATGCGCTCACCTTTCACATCGAAGTTCGGATCAACCGAAGAAAAGAAGGTGAACACAGTAGGTGATAAGGGAAATACTGTATTTCTGGATCCTCTAAATTTCCAGATATTATCACAACTTTAGATTAAGTTTTTAATTGTCGGAATGTTGCTTTAGATTATTTTGATAAGACGTGTTTTGGATATTTAGAAACTTTGTTTGTTGAAACTTTTATGATTTTGGTTTCATGTAGAACTATTGCAAAATTATGGCTGGTGTTATTTAATGCAAAAATATGTTGCTTAGAACAATTGCAAAACTATGAAAAGTAGACAGCTTTAGAGTGGGTAATCAGTACATGAATTACAAAGGTTAGAAATTCTAATTTATGTTGAATTGGATGTAGGGGGATTGGAAAACCAATTTTGTGCTATAA

mRNA sequence

ATGGATACTGTATTGTCTGGAAAGGAAAGAGAAGTTGAGCTTAAATCAGTCAAGAAGATGGTGGGAGTAGAGCCATGCACGATCATAGTACCTTTTGGCTTCGATTTTGAGAACTTTGAGGGCAGAGACAAGGAAAATACTGTAGAAGAATACAGTAATCCTAATGGAGATGAAGCTTCAAGTGAAGAGGATAAGAATTTAAATGCAGATGAAATGCAAGAAGGGGAAAATTTGGAGGAGAATATTGAAAACTCAACAGACGAAGAAGATAACATACCGATTACTTTGAGAAGGCGAAAAGTGAATGAAGAAGCTAAGGAGTCCATTCAGAAGACACGAACAGAATGCAATGAAACAGAGAGTATAAAACAAAATATTGTGACTAGAGGTACTGACAAGACTGTAGGTACAAAGGAGTCTACAAAAACAAAAGGTCGAGAGTTTATCAAGTTGAGGGTGAAGCGCAAAAAGAAGGAGGAAGATGAGTGTACTGTGGGAACAAAGAAGCGTAAGGGTGTGACTGAAATTGAGAAGGGGAAAAGGAAGGTTGGAGACAATGAAGATGTACATCGAGTAAGTTCGAGCAAGAAACGACGTATGATTATTGATGAATCTGGCTTAGAAGAATCAACACCGCAGAAGAAAAGAACAAGAATAGAAATTGAGGTTAACTCGAATCTAGGAAAGAGGAGTCGAAGGAGTGAATGTGTAACACCTTCAAAAAAGACTGGAGACAAGGGTGCGAACGGGAACGGGAAGGACAAAAAATACAAGGACGATGAGACATCAGAGGATTTTGAAAAATGGTTTGAGAAAGAGGAGGATGAAGTTTACGAGGAGACAATAAAAGATGGAAGAAGAGTGGATTGTGGTGAGACTTCAAAGGGAACTGATCGGGAAATGACAGATGAAGTCCAGAGAAATGATGAAGTCATAGGAGAGATTGAACGTACATCAAAAGAAATTAATACCAGTGGTATTAAAGATGTGTTAGAAAGTGTTCAAAAGCTTTCTGATTATGTGAAGTCTTCCTTTGAAAGTGTGAATAAAAGGATGGATGAAATGTGGACAGTTCTTAATGAAATATCTGGTGACATCAATAGTAGGAAAGTGAGTAGAACAAGTGATGATGCAATGGAGGATGAGAAAAGAGAAGATGATGATGATGATGATGGTGGTGGTGGAGATAGAGATGGAGATGGAGATGGATTGGACAGAATAAATGATGATAATTGGGAGGGTGGAGAAAAGATTGGTGGTGATGGGTCACATGATGAAGATAGAGGCGGAGAAGGGAAATTACATGGAGGAAATGTTGTGGACAAAGTTGGTGAAAACACAACATTAGAGGGGGATTGGAAAACCAATTTTGTGCTATAA

Coding sequence (CDS)

ATGGATACTGTATTGTCTGGAAAGGAAAGAGAAGTTGAGCTTAAATCAGTCAAGAAGATGGTGGGAGTAGAGCCATGCACGATCATAGTACCTTTTGGCTTCGATTTTGAGAACTTTGAGGGCAGAGACAAGGAAAATACTGTAGAAGAATACAGTAATCCTAATGGAGATGAAGCTTCAAGTGAAGAGGATAAGAATTTAAATGCAGATGAAATGCAAGAAGGGGAAAATTTGGAGGAGAATATTGAAAACTCAACAGACGAAGAAGATAACATACCGATTACTTTGAGAAGGCGAAAAGTGAATGAAGAAGCTAAGGAGTCCATTCAGAAGACACGAACAGAATGCAATGAAACAGAGAGTATAAAACAAAATATTGTGACTAGAGGTACTGACAAGACTGTAGGTACAAAGGAGTCTACAAAAACAAAAGGTCGAGAGTTTATCAAGTTGAGGGTGAAGCGCAAAAAGAAGGAGGAAGATGAGTGTACTGTGGGAACAAAGAAGCGTAAGGGTGTGACTGAAATTGAGAAGGGGAAAAGGAAGGTTGGAGACAATGAAGATGTACATCGAGTAAGTTCGAGCAAGAAACGACGTATGATTATTGATGAATCTGGCTTAGAAGAATCAACACCGCAGAAGAAAAGAACAAGAATAGAAATTGAGGTTAACTCGAATCTAGGAAAGAGGAGTCGAAGGAGTGAATGTGTAACACCTTCAAAAAAGACTGGAGACAAGGGTGCGAACGGGAACGGGAAGGACAAAAAATACAAGGACGATGAGACATCAGAGGATTTTGAAAAATGGTTTGAGAAAGAGGAGGATGAAGTTTACGAGGAGACAATAAAAGATGGAAGAAGAGTGGATTGTGGTGAGACTTCAAAGGGAACTGATCGGGAAATGACAGATGAAGTCCAGAGAAATGATGAAGTCATAGGAGAGATTGAACGTACATCAAAAGAAATTAATACCAGTGGTATTAAAGATGTGTTAGAAAGTGTTCAAAAGCTTTCTGATTATGTGAAGTCTTCCTTTGAAAGTGTGAATAAAAGGATGGATGAAATGTGGACAGTTCTTAATGAAATATCTGGTGACATCAATAGTAGGAAAGTGAGTAGAACAAGTGATGATGCAATGGAGGATGAGAAAAGAGAAGATGATGATGATGATGATGGTGGTGGTGGAGATAGAGATGGAGATGGAGATGGATTGGACAGAATAAATGATGATAATTGGGAGGGTGGAGAAAAGATTGGTGGTGATGGGTCACATGATGAAGATAGAGGCGGAGAAGGGAAATTACATGGAGGAAATGTTGTGGACAAAGTTGGTGAAAACACAACATTAGAGGGGGATTGGAAAACCAATTTTGTGCTATAA

Protein sequence

MDTVLSGKEREVELKSVKKMVGVEPCTIIVPFGFDFENFEGRDKENTVEEYSNPNGDEASSEEDKNLNADEMQEGENLEENIENSTDEEDNIPITLRRRKVNEEAKESIQKTRTECNETESIKQNIVTRGTDKTVGTKESTKTKGREFIKLRVKRKKKEEDECTVGTKKRKGVTEIEKGKRKVGDNEDVHRVSSSKKRRMIIDESGLEESTPQKKRTRIEIEVNSNLGKRSRRSECVTPSKKTGDKGANGNGKDKKYKDDETSEDFEKWFEKEEDEVYEETIKDGRRVDCGETSKGTDREMTDEVQRNDEVIGEIERTSKEINTSGIKDVLESVQKLSDYVKSSFESVNKRMDEMWTVLNEISGDINSRKVSRTSDDAMEDEKREDDDDDDGGGGDRDGDGDGLDRINDDNWEGGEKIGGDGSHDEDRGGEGKLHGGNVVDKVGENTTLEGDWKTNFVL

Homology

The following BLAST results are available for this feature:

BLAST of Sed0006860 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006860 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006860 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006860 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..88
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 360..459
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006860.1	Sed0006860.1	mRNA