Sed0006817 (gene) Chayote v1

Overview


Name	Sed0006817
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 4275447 .. 4276158 (+)
RNA-Seq Expression	Sed0006817
Synteny	Sed0006817

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCGAAAAAGGCCATGGAATCCCACATCGCTTAATTTGCCGCTTTTCCATTTAGCAACAACTGTCTTCTTCCCAACTCCAGGTTTCCCCTATATAAACCCCCCTTCTCCTCTCAATCCCCCTCAACGAGATGGAATCCATGGCGGACGCCTTCTTCCGATCCGTCTCCCACGGCTGCATCGCCGGCTGCGACGCCGGCATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCTCTTCACGACCGCGACAGCAACGCCAAACGCTGCTCCGCCCACAAATCTGTCGTCTCCTATCCCATTCGCCGCGCTTGGAGCGAAGGCTGCTTGGCTTCCGTCGCCGGATCTGGATCTGGATCTGCCGTTTCTTCTCCTTCTTCTTCTGAGATTGAAACCTTTGGATCTAACCGGCGATGATTTTTGTTCTTGGTCTGTAATATATTCTCTGAAATTCTTTTCATATATTCTCTGAAATTCTTTTTAGTTAGTCCAATTCTGTTAGATCTATGCGAAATTGGAGTGTGTGTGTGTTTGTACATTTTCTCGACTGTTCTTCTCATCTCTCTTGATTCACTTGGACGTGCTCTGTATTTTGGAGATTCCCTCTTTTCATTACAAATTGAGGACAAAGTTATCCAAAAACACAACTATTTTCTTTGTAGTTATTCATTTTTAGTTTTTAAAAATAAAAATGGTGTATGTTTTATAA

mRNA sequence

TACAGCGAAAAAGGCCATGGAATCCCACATCGCTTAATTTGCCGCTTTTCCATTTAGCAACAACTGTCTTCTTCCCAACTCCAGGTTTCCCCTATATAAACCCCCCTTCTCCTCTCAATCCCCCTCAACGAGATGGAATCCATGGCGGACGCCTTCTTCCGATCCGTCTCCCACGGCTGCATCGCCGGCTGCGACGCCGGCATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCTCTTCACGACCGCGACAGCAACGCCAAACGCTGCTCCGCCCACAAATCTGTCGTCTCCTATCCCATTCGCCGCGCTTGGAGCGAAGGCTGCTTGGCTTCCGTCGCCGGATCTGGATCTGGATCTGCCGTTTCTTCTCCTTCTTCTTCTGAGATTGAAACCTTTGGATCTAACCGGCGATGATTTTTGTTCTTGGTCTGTAATATATTCTCTGAAATTCTTTTCATATATTCTCTGAAATTCTTTTTAGTTAGTCCAATTCTGTTAGATCTATGCGAAATTGGAGTGTGTGTGTGTTTGTACATTTTCTCGACTGTTCTTCTCATCTCTCTTGATTCACTTGGACGTGCTCTGTATTTTGGAGATTCCCTCTTTTCATTACAAATTGAGGACAAAGTTATCCAAAAACACAACTATTTTCTTTGTAGTTATTCATTTTTAGTTTTTAAAAATAAAAATGGTGTATGTTTTATAA

Coding sequence (CDS)

ATGGAATCCATGGCGGACGCCTTCTTCCGATCCGTCTCCCACGGCTGCATCGCCGGCTGCGACGCCGGCATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCTCTTCACGACCGCGACAGCAACGCCAAACGCTGCTCCGCCCACAAATCTGTCGTCTCCTATCCCATTCGCCGCGCTTGGAGCGAAGGCTGCTTGGCTTCCGTCGCCGGATCTGGATCTGGATCTGCCGTTTCTTCTCCTTCTTCTTCTGAGATTGAAACCTTTGGATCTAACCGGCGATGA

Protein sequence

MESMADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRCSAHKSVVSYPIRRAWSEGCLASVAGSGSGSAVSSPSSSEIETFGSNRR

Homology

[Close]

BLAST of Sed0006817 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 69/98 (70.41%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 4  MADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRCS---AHKSVVSYPIRR 63
          MADA F SV HGCIA CDA I RRPYHKNCGCALHDRD+  +RCS   +  S VSYPIRR
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDN--RRCSHSMSKHSTVSYPIRR 60

Query: 64 AWSEGCLASVAGSGSGSAVSSPSSS---EIETFGSNRR 96
          AWSEGCLA  A SGSG  +SSPSSS   E E  GSNRR
Sbjct: 61 AWSEGCLAMAAASGSG--ISSPSSSPSMESEGLGSNRR 94

[Close]

BLAST of Sed0006817 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 8.4e-23
Identity = 66/98 (67.35%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 4  MADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRC----SAHKSVVSYPIR 63
          MADAF R V HGCIAG DAGIDRRPYHKNC CALHDRD+  +RC    S HKS VSYPIR
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDN--RRCSHSLSKHKS-VSYPIR 60

Query: 64 RAWSEGCLASVAGSGSG--SAVSSPSSSEIETFGSNRR 96
          RAWSEGCLA VA S +   S+ SSPS  ++E+ GS +R
Sbjct: 61 RAWSEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

[Close]

BLAST of Sed0006817 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.6e-19
Identity = 62/94 (65.96%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 4  MADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRC----SAHKSVVSYPIR 63
          MADA  R V +GCI   DA IDRRPYHKNC CALHDRD+  KRC    S HKS VSYPIR
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDN--KRCSHSMSKHKS-VSYPIR 60

Query: 64 RAWSEGCLASVAGSGSGSAVSSPSSSEIETFGSN 94
          RAWSEGCLA VA SG  S+ SSPS  +IE  G +
Sbjct: 61 RAWSEGCLAMVAASGI-SSPSSPSMDQIEGVGDD 90

[Close]

BLAST of Sed0006817 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 5  ADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRD-SNAKRCSAHKSVVSYPIRRAWS 64
          AD  FRS+  GCIAGCD GI+RRPYH+NC CALHD+   N          VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 65 EGCLASVAGSGSGSAVSSPSSSEIETFGSNR 95
          EGCLA  A S   S  SSP+ S +   G +R
Sbjct: 66 EGCLAMAAASCHSSPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Sed0006817 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 5  ADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRD-SNAKRCSAHKSVVSYPIRRAWS 64
          AD  FRS+  GCIAGCD GI+RRPYH+NC CALHD+   N          VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 65 EGCLASVAGSGSGSAVSSPSSSEIETFGSNR 95
          EGCLA  A S   S  SSP+ S +   G +R
Sbjct: 66 EGCLAMAAASCHSSPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Sed0006817 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23
Identity = 66/98 (67.35%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 4  MADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRC----SAHKSVVSYPIR 63
          MADAF R V HGCIAG DAGIDRRPYHKNC CALHDRD+  +RC    S HKS VSYPIR
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDN--RRCSHSLSKHKS-VSYPIR 60

Query: 64 RAWSEGCLASVAGSGSG--SAVSSPSSSEIETFGSNRR 96
          RAWSEGCLA VA S +   S+ SSPS  ++E+ GS +R
Sbjct: 61 RAWSEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

[Close]

BLAST of Sed0006817 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 4  MADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRC----SAHKSVVSYPIR 63
          MADA  R V +GCI   DA IDRRPYHKNC CALHDRD+  KRC    S HKS VSYPIR
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDN--KRCSHSMSKHKS-VSYPIR 60

Query: 64 RAWSEGCLASVAGSGSGSAVSSPSSSEIETFGSNRR 96
          RAWSEGCLA VA SG  S+ SSPS  ++E+ GS +R
Sbjct: 61 RAWSEGCLAMVAASGI-SSPSSPSMDQVESLGSYKR 92

[Close]

BLAST of Sed0006817 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.7e-17
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 5  ADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRD-SNAKRCSAHKSVVSYPIRRAWS 64
          AD  FRS+  GCIAGCD GI+RRPYH+NC CALHD+   N          VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 65 EGCLASVAGSGSGSAVSSPSSSEIETFGSNR 95
          EGCLA  A S   S  SSP+ S +   G +R
Sbjct: 66 EGCLAMAAASCHSSPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Sed0006817 vs. ExPASy TrEMBL
Match: W9SB18 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003509 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 54/96 (56.25%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 5  ADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKRCSAH----KSVVSYPIRR 64
          AD  F+ V  GCIAGCD  IDRRPYH+NC CALH   S    CS+H       VSYPIR+
Sbjct: 4  ADGVFKCVYEGCIAGCDTAIDRRPYHRNCTCALH--KSRKIHCSSHGLPKSKSVSYPIRK 63

Query: 65 AWSEGCLASVAGSG-SGSAVSSPSSSEIETFGSNRR 96
          +WSEGCLA  A +G +GSA SSPSSS     G   R
Sbjct: 64 SWSEGCLALAAAAGAAGSAASSPSSSPAVVAGGKIR 97

[Close]

BLAST of Sed0006817 vs. ExPASy TrEMBL
Match: A0A5C7HXC5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012175 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MESMADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAK-RCSAHK--SVVSYP 60
          M + AD FFR+V  GCI+GCD+GI+RRPYH+NC CALH + +N K R + HK    VSYP
Sbjct: 1  MAAAADGFFRNVYEGCISGCDSGIERRPYHRNCSCALHSKSNNNKSRNNCHKCNKNVSYP 60

Query: 61 IRRAWSEGCLASVAGSGSGSAVSSPSSS 86
          +RRAWSEG L  +A + S S  SSPSSS
Sbjct: 61 MRRAWSEGSLLVMAAADS-SYSSSPSSS 87

[Close]

BLAST of Sed0006817 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 5   ADAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRDSNAKR---------CSAHKS--V 64
           AD  FRS+  GCI+G D+ I+RRPYHKNCGCALHD+ S A +         C  H S   
Sbjct: 3   ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 65  VSYPIRRAWSEGCLASV----AGSGSGSAVSSPSSSEIETFGSN 94
           +S+PIRR+WSEG + ++    + S S +  S  SSS +    S+
Sbjct: 63  ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSLSNLASD 106

[Close]

BLAST of Sed0006817 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-15
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 6   DAFFRSVSHGCIAGCDAGIDRRPYHKNCGCALHDRD---SNAKRCSAHKS-VVSYPIRRA 65
           D  FR++  GCI+ CD+ I RRPYHKNCGCALH+R     +A  C   +S VV +PI+R+
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 66  WSEG---CLASVAGSGSGSAVSSPSSSEIETFGS 93
           WSEG    L   + S S +  S  SSS I T  S
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLAS 100

The following BLAST results are available for this feature:

BLAST of Sed0006817 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587850.1	1.7e-23	70.41	hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008443899.1	8.4e-23	67.35	PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]	[more]
KAE8653037.1	5.6e-19	65.96	hypothetical protein Csa_019637 [Cucumis sativus]	[more]
XP_007013703.2	1.2e-16	56.04	PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao]	[more]
EOY31322.1	1.2e-16	56.04	Uncharacterized protein TCM_038276 [Theobroma cacao]	[more]

BLAST of Sed0006817 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006817 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9X6	4.1e-23	67.35	uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=...	[more]
A0A0A0LWK0	1.4e-20	65.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1	[more]
A0A061GQ94	5.7e-17	56.04	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1	[more]
W9SB18	1.6e-16	56.25	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003509 PE=4 SV=1	[more]
A0A5C7HXC5	2.2e-16	59.09	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012175 PE=4 SV=1	[more]

BLAST of Sed0006817 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	1.1e-15	44.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	5.2e-15	47.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 4..89
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 4..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006817.1	Sed0006817.1	mRNA