Sed0006815 (gene) Chayote v1

Overview
NameSed0006815
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAconitate hydratase
LocationLG07: 8429239 .. 8430686 (-)
RNA-Seq ExpressionSed0006815
SyntenySed0006815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATAACTCTCAAATAGGATGCAAGTTGGTTTGATCCTCTATATATACCCACAAAACCAAGCCATAGAGTTCATCCCCAAAGATAGAAGAAGTAGAAAATAGAAGAATGGGTTTAAAGAAAGAGTTCATATTTTTAAGTGTTATGGTTTTTTTTCTTTTCCATATGGCAACAGGGAGACTCATCCACAATACTTTACCTTATGTAGACAGTAAGTCTTTATATTCATTTTATCTCCTTTCCTTATTTCATCTCTCTTTTTTTTTTCTTTTTTTTTTTTTTTATAATTTCGAGTGCCCAAATTAATTTATGAAGATTTCATCTAATTTCTATTTGATAATATGAAATTTCATCCAAAATCAATCGGATAATAAAAAGAAGAGAAATTGTACGAGATAAATTCTTTTCACAAAATATGAAACAAAGCTTAAACTACTTTGATCTATAGTCACTAATACGCTTTATACAATATTATAAATACTCATTAATACAATATTATAAAAAAATTGTAAACAAATATTAATCAATATTTATGACTATATATATATAATATTTTAAAATGATTATATTTGTAATTATATTTTAGATTTGACTATTCTTTTTCGTGCATACTTATTATAAAAGTGGTAACTACTTTGAATTATTTTTATTATTTTCATGATTCTTATTGATCACTAAAACCTCAACCTCAAATAATGATTCAATAACTTTTCTTAACAACATGCTTCAAGTTGTATTTTTAAAATATATATATATATATATATATATACATGCATTATTACACATCTCATTCTTGTTTGTTGTTGAATTCATTTTAGAGATGCAACAAAATTCTACATTCTATTTATATATAAATTTATATAAAGAAAGAATTTAAGTACATACCGTTTAAAATTATGATGAGACATATTGCCATTTGTATTATTTATTTCTTAGCACTGTCTTATTAGATAGTATTTGAAATTCCATGTAAATTTAATTAACAATAAAAATACGTATAATTTCATGTATCAGCTTATAGAATATGACTTGTATTTTATTGTACACGCAGTTGAGAAGATTGATATGAATGGAAAAAATACAATTGGAAGCAAACTTTTGAGCTCGGCCCGACCTAGAGGGGGCAACTATATTAACAACCCAGCAGCGAAGAAGGCTGCTGTTCGAGCCACCGACTACCGGCCATAACTGCCGTGAAAACTAGTATATCTAATTTCCTGGAAATTTCAATGTAACTGGTCATATTTGTGGCTGAGGATTATGAATAATAAACTACGTATTTGAAGTTAACCTTCTTTGTTTTATTGGTAATGCAACCGATTGTTCAATATCGGAAAGAGAGGGAAGAAATTAAGGATTTAAATTGAATGGCAACCACTTTCGTTGGTATGAAATTATTTTTTGAAAATTTATGTCCAAAATAAATAATATCTTCCAATGGGATACGC

mRNA sequence

ATTCATAACTCTCAAATAGGATGCAAGTTGGTTTGATCCTCTATATATACCCACAAAACCAAGCCATAGAGTTCATCCCCAAAGATAGAAGAAGTAGAAAATAGAAGAATGGGTTTAAAGAAAGAGTTCATATTTTTAAGTGTTATGGTTTTTTTTCTTTTCCATATGGCAACAGGGAGACTCATCCACAATACTTTACCTTATGTAGACATTGAGAAGATTGATATGAATGGAAAAAATACAATTGGAAGCAAACTTTTGAGCTCGGCCCGACCTAGAGGGGGCAACTATATTAACAACCCAGCAGCGAAGAAGGCTGCTGTTCGAGCCACCGACTACCGGCCATAACTGCCGTGAAAACTAGTATATCTAATTTCCTGGAAATTTCAATGTAACTGGTCATATTTGTGGCTGAGGATTATGAATAATAAACTACGTATTTGAAGTTAACCTTCTTTGTTTTATTGGTAATGCAACCGATTGTTCAATATCGGAAAGAGAGGGAAGAAATTAAGGATTTAAATTGAATGGCAACCACTTTCGTTGGTATGAAATTATTTTTTGAAAATTTATGTCCAAAATAAATAATATCTTCCAATGGGATACGC

Coding sequence (CDS)

ATGGGTTTAAAGAAAGAGTTCATATTTTTAAGTGTTATGGTTTTTTTTCTTTTCCATATGGCAACAGGGAGACTCATCCACAATACTTTACCTTATGTAGACATTGAGAAGATTGATATGAATGGAAAAAATACAATTGGAAGCAAACTTTTGAGCTCGGCCCGACCTAGAGGGGGCAACTATATTAACAACCCAGCAGCGAAGAAGGCTGCTGTTCGAGCCACCGACTACCGGCCATAA

Protein sequence

MGLKKEFIFLSVMVFFLFHMATGRLIHNTLPYVDIEKIDMNGKNTIGSKLLSSARPRGGNYINNPAAKKAAVRATDYRP
Homology
[Close]
BLAST of Sed0006815 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-13
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 1  MGLKKEFIFLSVMVFFLFHMATGRLIH-NTLPYVDIEKIDMNGKNTIGSKLLSSARPRGG 60
          MGLK+  I LSVMV  L HMATGR +   TLP  D E ++M+G+   G++LLSSARPRGG
Sbjct: 1  MGLKRAPILLSVMVLVLVHMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRGG 60

Query: 61 NYINNP-AAKKAAVRATDYRP 80
          NYI+NP AA KAA++ + Y P
Sbjct: 61 NYIDNPQAANKAAIQTSGYHP 81

[Close]
BLAST of Sed0006815 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-12
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MGLKKEFIFLSVMVFFLF-HMATGR-LIHNTLPYVDIEKIDMNGKNTIGSKLLSSARPRG 60
          MGLK+E IF SVM+  L  +MATGR L H+T  + D E ++M+GKN  GS+ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINNP-AAKKAAVRATDYRP 80
          GNYIN P AA+KAAV    Y+P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of Sed0006815 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 20 MATGRLIHNTLPYVDIEKIDMNGKNTIGSKLLSSARPRGGNYINNP-AAKKAAVRATDYR 79
          MATGRLI++T  + D E ++M+GKN  GS+LLS+A PRGGNYINNP AA+KAAVR + Y+
Sbjct: 1  MATGRLIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQ 60

[Close]
BLAST of Sed0006815 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MGLKKEFIFLSVMVFFLF-HMATGR-LIHNTLPYVDIEKIDMNGKNTIGSKLLSSARPRG 60
          MGLK+E IF SVM+  L  +MATGR L H+T  + D E ++M+GKN  GS+ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINNP-AAKKAAVRATDYRP 80
          GNYIN P AA+KAAV    Y+P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of Sed0006815 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 20 MATGRLIHNTLPYVDIEKIDMNGKNTIGSKLLSSARPRGGNYINNP-AAKKAAVRATDYR 79
          MATGRLI++T  + D E ++M+GKN  GS+LLS+A PRGGNYINNP AA+KAAVR + Y+
Sbjct: 1  MATGRLIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQ 60

The following BLAST results are available for this feature:
BLAST of Sed0006815 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600180.11.7e-1358.02hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53132.17.2e-1258.54hypothetical protein Csa_014795 [Cucumis sativus][more]
KAA0044639.11.8e-1063.93Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [... [more]
BLAST of Sed0006815 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0006815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI83.5e-1258.54Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
A0A5A7TTS98.6e-1163.93Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G... [more]
BLAST of Sed0006815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006815.1Sed0006815.1mRNA