Sed0006796 (gene) Chayote v1

Overview


Name	Sed0006796
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 44162618 .. 44162986 (+)
RNA-Seq Expression	Sed0006796
Synteny	Sed0006796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAAGAATTTGGACAGGGCTGCCATTTGTGTGCGTTGTGGCCATCTTCATTTGCCTAATTTTCATCAAAATTGCCGACGCGGATTCCAACCAGGACCACGGCATCCACGCTGTCGGCCACGCCAGCGAGCCGTTCTGCCCCGGTGGCTACTCTGACAGAGGGGACCACTGCCAGCACATCCGCCACGTCAGCACACTAGGCTATAATGACGGCGATTTTGATGACAAGTTTGAAGTGAAGGGCAAGGCTACGATGTTCTTGTCCACGTCGGAATCCACCATGGCCGCCGAACAGCTGGCCGAGAGTTTGGACAACGTTGAACCCCAACAGATTATGGATAGAGTCGTTGTCTTGGGGCATTGA

mRNA sequence

ATGGCTACAAGAATTTGGACAGGGCTGCCATTTGTGTGCGTTGTGGCCATCTTCATTTGCCTAATTTTCATCAAAATTGCCGACGCGGATTCCAACCAGGACCACGGCATCCACGCTGTCGGCCACGCCAGCGAGCCGTTCTGCCCCGGTGGCTACTCTGACAGAGGGGACCACTGCCAGCACATCCGCCACGTCAGCACACTAGGCTATAATGACGGCGATTTTGATGACAAGTTTGAAGTGAAGGGCAAGGCTACGATGTTCTTGTCCACGTCGGAATCCACCATGGCCGCCGAACAGCTGGCCGAGAGTTTGGACAACGTTGAACCCCAACAGATTATGGATAGAGTCGTTGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGGCTACAAGAATTTGGACAGGGCTGCCATTTGTGTGCGTTGTGGCCATCTTCATTTGCCTAATTTTCATCAAAATTGCCGACGCGGATTCCAACCAGGACCACGGCATCCACGCTGTCGGCCACGCCAGCGAGCCGTTCTGCCCCGGTGGCTACTCTGACAGAGGGGACCACTGCCAGCACATCCGCCACGTCAGCACACTAGGCTATAATGACGGCGATTTTGATGACAAGTTTGAAGTGAAGGGCAAGGCTACGATGTTCTTGTCCACGTCGGAATCCACCATGGCCGCCGAACAGCTGGCCGAGAGTTTGGACAACGTTGAACCCCAACAGATTATGGATAGAGTCGTTGTCTTGGGGCATTGA

Protein sequence

MATRIWTGLPFVCVVAIFICLIFIKIADADSNQDHGIHAVGHASEPFCPGGYSDRGDHCQHIRHVSTLGYNDGDFDDKFEVKGKATMFLSTSESTMAAEQLAESLDNVEPQQIMDRVVVLGH

Homology

[Close]

BLAST of Sed0006796 vs. NCBI nr
Match: KAG6572424.1 (hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-23
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 12  VCVVAIFICLIFIKIADADSNQDHGIHAVGHASEPFCPGGYSDRGDHCQHIRHVSTLGY- 71
           +C +AIFI L+FIK+A AD +   GIHA+GHA EPFCPGGYSDRGDHC HI  ++++ Y 
Sbjct: 1   MCFLAIFISLLFIKLAHADPHH-FGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITSVNYG 60

Query: 72  ---NDGDFDDKFEVKGKATMFLSTSESTMAAEQLAE--SLDNVEP-QQIMDRVVVLGH 123
              +D DFDD ++V GK +M +S SEST  AE+ A    L+++ P +Q+ D+V VLGH
Sbjct: 61  EDDDDDDFDDTYKVLGKLSMAMSVSESTDDAEKEAVGLELEDISPEEQLSDKVTVLGH 117

[Close]

BLAST of Sed0006796 vs. NCBI nr
Match: KAE8647343.1 (hypothetical protein Csa_003811 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 8   GLPFVCVVAIFICLIFIKIADADSNQDH-GIHAVGHASEPFCPGGYSDRGDHCQHIRHVS 67
           GL FVCV+AI IC    K+ADAD+  DH GIHAVGHA EPFCPGGYSDRGDHCQH+  +S
Sbjct: 9   GLSFVCVIAILIC----KVADADA--DHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRIS 68

Query: 68  TLGYNDGDFDDKFEVKGKATMFLSTSESTMAAEQLAESLDNVEPQQIMDRVV 119
           ++ YN+ D DD+F+   K    LS S S  AAE  A+ L+    +   D++V
Sbjct: 69  SVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELESLELQYDQIV 114

[Close]

BLAST of Sed0006796 vs. NCBI nr
Match: KAA0061659.1 (hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-20
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 9   LPFVCVVAIFICLIFIKIADADSNQDH-GIHAVGHASEPFCPGGYSDRGDHCQHIRHVST 68
           L FVCV+AI +     K+ADADS  DH GIHAVGHA EPFCPGGYSDRGDHCQH+  +S+
Sbjct: 7   LSFVCVIAILVS----KVADADS--DHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISS 66

Query: 69  LGYNDGD------FDDKFEVKGKATMFLSTSESTMAAEQLAESLD--NVEP-QQIMDRVV 123
           + YN+ D      FDD+++V GK ++ +S       AE  A+ L+   + P QQ+ + V+
Sbjct: 67  VNYNENDDDDDDEFDDRYKVVGKLSVSVSPD-----AEDQADGLELGTISPDQQLSNNVI 119

[Close]

BLAST of Sed0006796 vs. NCBI nr
Match: KAG6589281.1 (hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 8.0e-10
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 8   GLPFVCVVAIFICLIFIKIADADSNQDHGIHAVGHASEPFCPGGYSDRGDHCQHI-RHVS 67
           GL F+ +VAIFICL+FI++ADA     H  H+  HA E  CPGG    G+HC H  R  +
Sbjct: 6   GLSFLGLVAIFICLLFIEVADA-----HSGHSGTHAVEKPCPGG----GEHCHHSGRMAA 65

Query: 68  TLGYNDGDFDDKFEVKGKATMFLSTSESTMAAEQLA--ESLDNVEPQQ-IMDRVVVLGH 123
                D DFDD ++   K  M +S SEST  AE+ A    ++   P++    +VVVLGH
Sbjct: 66  QTVDEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH 115

[Close]

BLAST of Sed0006796 vs. ExPASy TrEMBL
Match: A0A0A0KE60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 8   GLPFVCVVAIFICLIFIKIADADSNQDH-GIHAVGHASEPFCPGGYSDRGDHCQHIRHVS 67
           GL FVCV+AI IC    K+ADAD+  DH GIHAVGHA EPFCPGGYSDRGDHCQH+  +S
Sbjct: 9   GLSFVCVIAILIC----KVADADA--DHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRIS 68

Query: 68  TLGYNDGDFDDKFEVKGKATMFLSTSESTMAAEQLAESLD---NVEPQQIMDRVVVLGH 123
           ++ YN+ D DD+F+   K    LS S S  AAE  A+ L+        ++  + +VLGH
Sbjct: 69  SVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLGH 121

[Close]

BLAST of Sed0006796 vs. ExPASy TrEMBL
Match: A0A5A7V7L4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00280 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 9   LPFVCVVAIFICLIFIKIADADSNQDH-GIHAVGHASEPFCPGGYSDRGDHCQHIRHVST 68
           L FVCV+AI +     K+ADADS  DH GIHAVGHA EPFCPGGYSDRGDHCQH+  +S+
Sbjct: 7   LSFVCVIAILVS----KVADADS--DHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISS 66

Query: 69  LGYNDGD------FDDKFEVKGKATMFLSTSESTMAAEQLAESLD--NVEP-QQIMDRVV 123
           + YN+ D      FDD+++V GK ++ +S       AE  A+ L+   + P QQ+ + V+
Sbjct: 67  VNYNENDDDDDDEFDDRYKVVGKLSVSVSPD-----AEDQADGLELGTISPDQQLSNNVI 119

The following BLAST results are available for this feature:

BLAST of Sed0006796 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572424.1	2.8e-23	53.39	hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647343.1	5.9e-21	54.46	hypothetical protein Csa_003811 [Cucumis sativus]	[more]
KAA0061659.1	3.8e-20	50.81	hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa]	[more]
KAG6589281.1	8.0e-10	42.86	hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0006796 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE60	2.9e-21	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1	[more]
A0A5A7V7L4	1.9e-20	50.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0006796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006796.1	Sed0006796.1	mRNA