Sed0006786 (gene) Chayote v1

Overview


Name	Sed0006786
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG02: 45619101 .. 45619463 (-)
RNA-Seq Expression	Sed0006786
Synteny	Sed0006786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGATTGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAGTACAATCTGGATTACACAAAGCTTTGAAGGGAATACCAAGTGGTGGTGATTATGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

mRNA sequence

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGATTGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAGTACAATCTGGATTACACAAAGCTTTGAAGGGAATACCAAGTGGTGGTGATTATGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

Coding sequence (CDS)

ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGATTGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAGTACAATCTGGATTACACAAAGCTTTGAAGGGAATACCAAGTGGTGGTGATTATGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCAACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG

Protein sequence

MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY

Homology

[Close]

BLAST of Sed0006786 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGST 60
           M+ FMS VK DVEKFDG++NFGLWQVQVKDVL+QS LHKALKG PS G  EK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 120
           ESSGGSS+GSKKS+MS ++WEEMDLRAAS IR +LAKN+LANVH ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

[Close]

BLAST of Sed0006786 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGST 60
           M+ F S+VKFDVEKFDG +NFGLWQVQVKDVL+QSGLHKAL+G  S  D EKS       
Sbjct: 1   MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEKS------- 60

Query: 61  ESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 120
                      +S+MSD +WEE+DLRAAS IRL+LAKNVLANV GISTAKELW+KLE +Y
Sbjct: 61  -----------ESSMSDGDWEELDLRAASTIRLSLAKNVLANVQGISTAKELWKKLEGLY 102

[Close]

BLAST of Sed0006786 vs. NCBI nr
Match: KAF7810708.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 75/120 (62.50%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGST 60
           M+ F S++KFDVEKFDG +NFG WQVQVKDVL+QSGL KAL+G  S  D EKS       
Sbjct: 49  MSKFSSAMKFDVEKFDGRINFGWWQVQVKDVLIQSGLQKALEGKVSSKDSEKS------- 108

Query: 61  ESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 120
                      +S+MSD +WEE+DLRAAS IRL LAKNVLANV GISTAKELW+KLE +Y
Sbjct: 109 -----------ESSMSDGDWEELDLRAASTIRLCLAKNVLANVQGISTAKELWKKLEGLY 150

[Close]

BLAST of Sed0006786 vs. NCBI nr
Match: KAF3622233.1 (hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical protein FXO37_28487 [Capsicum annuum])

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-28
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSG 64
           +   KF++EKFDG +NFG+WQVQVKDVL+QSGLHKALK  P+    EK + D   +E   
Sbjct: 69  LEGTKFEIEKFDGRINFGVWQVQVKDVLIQSGLHKALKERPTS---EKGNKDSEKSE--- 128

Query: 65  GSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
            SSK S+KS +SD+EWEE+D++AAS IRL LAKNVLANV G+ST KELWEKLE +Y
Sbjct: 129 -SSKDSEKSKISDEEWEELDMKAASQIRLYLAKNVLANVIGLSTTKELWEKLEELY 177

[Close]

BLAST of Sed0006786 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-28
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 6   SSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGG 65
           +S++++VEKFDG +NFGLWQVQVKDVL+QSGLHKALKG P+     + S D   T+ +  
Sbjct: 8   NSIRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPT----PEVSSDTSVTDQT-- 67

Query: 66  SSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
                 +S MSD++WE++DLRAAS IRL LAKNVLAN+HGISTAK+LWEKLE +Y
Sbjct: 68  ----KSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELY 112

[Close]

BLAST of Sed0006786 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 5   MSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSG 64
           MS VK++V KF+G   F  WQ +++D+L+Q GLHK L                       
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL----------------------- 60

Query: 65  GSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
                 K   M  ++W ++D RAAS IRL+L+ +V+ N+    TA+ +W +LE++Y
Sbjct: 61  -DVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLY 92

[Close]

BLAST of Sed0006786 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.1e-41
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MASFMSSVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGST 60
           M+ FMS VK DVEKFDG++NFGLWQVQVKDVL+QS LHKALKG PS G  EK S DGG  
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 120
           ESSGGSS+GSKKS+MS ++WEEMDLRAAS IR +LAKN+LANVH ISTAKELWEKLEA+Y
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

[Close]

BLAST of Sed0006786 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 7   SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGS 66
           S +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
           S    KS MS++EWEE+D+RAAS IRL LAKNVLANV   S+ KELWEKLE MY
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMY 109

[Close]

BLAST of Sed0006786 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 7   SVKFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGS 66
           S +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    S
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDS 61

Query: 67  SKGSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
           S    KS MS++EWEE+D+RAAS IRL LAKNVLANV   S+ KELWEKLE MY
Sbjct: 62  SGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMY 109

[Close]

BLAST of Sed0006786 vs. ExPASy TrEMBL
Match: A0A2G3AMB5 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 9   KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSK 68
           KF++EKFDG +NF LWQVQVKDVL+QSGL+KALK  P+        GD  S +S   SSK
Sbjct: 211 KFEIEKFDGRINFDLWQVQVKDVLIQSGLYKALKERPT-----SEKGDKDSEKSQ--SSK 270

Query: 69  GSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
            S+K  +SD+EWEE+D++AAS IRL LAKNVLANV G+ST KELWEKLE +Y
Sbjct: 271 DSEKFRISDEEWEELDMKAASPIRLFLAKNVLANVIGLSTTKELWEKLEELY 315

[Close]

BLAST of Sed0006786 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 9   KFDVEKFDGLMNFGLWQVQVKDVLVQSGLHKALKGIPSGGDYEKSSGDGGSTESSGGSSK 68
           +FD+EKFDG +NFGLWQVQVKD+L+QSGL+KALKG P+      S  +G   +    SS 
Sbjct: 90  RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA------SLSEGKEPDKPSDSSG 149

Query: 69  GSKKSNMSDDEWEEMDLRAASVIRLNLAKNVLANVHGISTAKELWEKLEAMY 121
              KS MS++EWEE+D+RAAS IRL LAKNVLANV   S+ KELWEKLE MY
Sbjct: 150 DKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMY 195

The following BLAST results are available for this feature:

BLAST of Sed0006786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.5e-40	77.50	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7802225.1	2.1e-31	65.00	cytochrome p450 [Senna tora]	[more]
KAF7810708.1	5.8e-29	62.50	cytochrome p450 [Senna tora]	[more]
KAF3622233.1	2.9e-28	62.93	hypothetical protein FXO38_31400 [Capsicum annuum] >KAF3630407.1 hypothetical pr...	[more]
KAF5463231.1	4.9e-28	61.74	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Sed0006786 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-11	33.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Sed0006786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	7.1e-41	77.50	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3CWI3	4.9e-26	61.40	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3BK59	4.9e-26	61.40	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A2G3AMB5	4.9e-26	63.39	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_03257 PE=4 SV=1	[more]
A0A6A2YS90	1.1e-25	61.61	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]

BLAST of Sed0006786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..71
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..120
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006786.1	Sed0006786.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding