Sed0006743 (gene) Chayote v1

Overview


Name	Sed0006743
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein EMBRYO DEFECTIVE 514-like
Location	LG08: 1252526 .. 1255327 (+)
RNA-Seq Expression	Sed0006743
Synteny	Sed0006743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAATTGTTAGAAACATTTAGTTTGGGTGGTTTGTGCAATTTTGAGTTAATAAAACAGCTATTATAAAATCCCTTCTTCTACCTTTTTCTAGGGTTTAAGTTTCTTGGCAGTTCCAACTCCAGAGTTCAAAGCAACCTTACCAATGGCGGAAGAAACAACCCCTCAACCCGCCGGAAAAGATCCGGAGGTAAGCAACCCCGGCGCCGATGATACGGAAGTTAAAAATGGCGATGCAAATCCGAAGCGAGAGAGGGAGGAAGAAATCGCCGGCGACAATGCCGGAGAGGTGAAAAAGCCGAAGGTGGAGGAAAGCGTCGAGAAGGCGGCGCTTGGTCCGGTGAGTTTAGGCCCAAAGAGCTTTGGATCATCGGTGGAGCTGTTCGATTACTTCTACAACTTCCTTCACAACTGGCCTGCTAACGTGAATGTGAACCAGGTATGATCTTATGGACTTCTTTAATCCACCATTGTTCTCTGTTCTGTTCATTGAATATGATCGCGAGAAAATTACTTTCGTTAGAAGGTTGATTTGGAACTTGATTGACGGAATTTCAACTGAATGTTGCTGTTATTGTTTATCTCATTCGTATTTGGCTAAGTAGGAAGTAAATATCAGAGGAGGTGGGGAATTAGGAACTCTATCCTCATGAATTGTGAATTATCTATTGTAGTTGTCTTGTTGGAGAATAATTTTGATTTTGTGGACAAATTGGAATCTGATATGTGTTGTTCTTCAATATTCTGATGGAAATTGATGATGTTTGAGGTCTTTACACTTCTTAGAGTTCCCTAATGGGCATACTGGATATGTATTATGTTTTTGTCTCTTAACATCGTATTATACTTTTTTGGGCGACAATATTTTTTGGCAAGCAACTGGGTGATTATTTGAAATTATTATCAGTATCAGTTCATCAGGAAAGGTTTATTTAATTGGTCTTGTGTTGAAATCCGTTACTGTTTGAGTTTGCACACATTTTGACCGTTTCGACTATTGTCACGGGACAATACCGTCTAAACCTACCATATTTGGATGTCTGTGTGAAGATATTGTTTTTCTGCCTGTGTATTTTATTTTAAAGGACTCTGAATTTCTTGCTTGGTGTATTATTTAAGGCATCCTATTACGGAGTTTAATTTAATTGAAATCCATGTCAGATTGATTTAGTAGTTGGCTTGATTTTATGCCATTTATAATAATAATAAAATATTCTGGTTGATTTGGTTTTTGTTAGCTCTCAATTTTCTTTTTTATGAATTGTCTGTTGATTTGGTGTTAGTTTTGGTCAAACCCCACTTACATCTTTTGATCTTTAGATGGGACTGTTTGACATAATTGAAAATGGGAAATGGAATATTAATATGTTTCTTTGACGTGTCCACTTTTGGCCTGAATTTCTCTTTGAAGAATTTCTTTCAGTAGCTTATTCTGCATTTTTGTGTTGTTATTCTTCATGTTTCCCTTATTGTTGATTGATTTTAGTGGAGGAAATGGACTTGCTTTATCTATTTAGAACTCCAGTGTGCCTCTATGGGATGATTTTGCATTTCAATGGGGGGAAGTTATGGTTAGTGTCTGCAAATCCATGTATTTTGGCCGGTTACAGGTTTTGATCACAGAGGACTTTGTATTCCGCATCACTTACTAGTACTTTTGTTGCACTTCGTTTCAATGTTTTTTTTTTTTTTTGCGTTCTTTCTATATTTTGTGTCACATAGTATTGTTTTAGCTAATCTTAACGTAGCTGAAGTTGTTTAAAGTTAAAACATTAGTAATTTCGTTTGTTGGTTGAAAATTTTGTTCTATGTTCCATTATACTCCCGGTATTGTTTAGTCAGTCATGTTTTTTCATTTAGCCAGTGCTGTTCTAAGTGAAATTTTTTCCAACATTTTCGTCCTGAATGTCTTCATCATGATATCAAACATGGTCTCCTATAGGTAGCGTAGTGGTCAAATACTTTTGTAGTCCCAAGTTTGAAGTGGCCCTGAGAATTAATTTCTCAGGCGACTCCAATTTTGTGTTGAGTCTCACTGATTAGGGATGGGCCAATGGTGCCTCCGTATTTTGAAGAGCAAAGCTCCAAGTTCGTGGGTTATTAAAAAACAACATGATACGAAACATTTATAATCGATCAAATTTAATGTTGAGGAGCATTAACTTCATAGATGACCAATATTTGATATATATATATATATATATATATATATATTTGTTTGTGTGGCAGTACGAGAAGATGGTGCTGATGGATTTGATTAAGAAGGGGCATGTAGAACCGACGAAAAAGATAGGGTGTGGAATCGGTGCTTTCCAAATTCAATACCACCCTATGTGGAAAAGCAAATGCTTCTTCCTCATTCGGGAGGATGGCTCAACCGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCTCTGCCTGAAAACTTGAAGTTAAAGTCTGATGCAAACAGGTTGTCGGGTGGCGGCGGTAAGCACCGCGGTGGAGGACGAGGTGGCGGACGCGGAAGAGGAGGTAGGGGGAGAAACTGATTGCTTTTCAGTTTTCACCACAATTTTGCTGCCAAGAATTTATGCCCAAATCCCAACCATGTCTCTGTTAGAGAGGGTGCTGAGTTATCTCTTTGAACTTAAAATTTGAGAAGGTACTTTCATAACGAATACTTATGGAAGTATGAGTTTTTACTTCATTTTTTTATATCCTGGGAATAGGAGCTATTTTTACTTCAATTTTAGGGCAAATTGGTTTCTTTAATATTATCTAAGATTCTTCACTTTGTAGGACTGTGGTTAATTT

mRNA sequence

CTTAATTGTTAGAAACATTTAGTTTGGGTGGTTTGTGCAATTTTGAGTTAATAAAACAGCTATTATAAAATCCCTTCTTCTACCTTTTTCTAGGGTTTAAGTTTCTTGGCAGTTCCAACTCCAGAGTTCAAAGCAACCTTACCAATGGCGGAAGAAACAACCCCTCAACCCGCCGGAAAAGATCCGGAGGTAAGCAACCCCGGCGCCGATGATACGGAAGTTAAAAATGGCGATGCAAATCCGAAGCGAGAGAGGGAGGAAGAAATCGCCGGCGACAATGCCGGAGAGGTGAAAAAGCCGAAGGTGGAGGAAAGCGTCGAGAAGGCGGCGCTTGGTCCGGTGAGTTTAGGCCCAAAGAGCTTTGGATCATCGGTGGAGCTGTTCGATTACTTCTACAACTTCCTTCACAACTGGCCTGCTAACGTGAATGTGAACCAGTACGAGAAGATGGTGCTGATGGATTTGATTAAGAAGGGGCATGTAGAACCGACGAAAAAGATAGGGTGTGGAATCGGTGCTTTCCAAATTCAATACCACCCTATGTGGAAAAGCAAATGCTTCTTCCTCATTCGGGAGGATGGCTCAACCGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCTCTGCCTGAAAACTTGAAGTTAAAGTCTGATGCAAACAGGTTGTCGGGTGGCGGCGGTAAGCACCGCGGTGGAGGACGAGGTGGCGGACGCGGAAGAGGAGGTAGGGGGAGAAACTGATTGCTTTTCAGTTTTCACCACAATTTTGCTGCCAAGAATTTATGCCCAAATCCCAACCATGTCTCTGTTAGAGAGGGTGCTGAGTTATCTCTTTGAACTTAAAATTTGAGAAGGTACTTTCATAACGAATACTTATGGAAGTATGAGTTTTTACTTCATTTTTTTATATCCTGGGAATAGGAGCTATTTTTACTTCAATTTTAGGGCAAATTGGTTTCTTTAATATTATCTAAGATTCTTCACTTTGTAGGACTGTGGTTAATTT

Coding sequence (CDS)

ATGGCGGAAGAAACAACCCCTCAACCCGCCGGAAAAGATCCGGAGGTAAGCAACCCCGGCGCCGATGATACGGAAGTTAAAAATGGCGATGCAAATCCGAAGCGAGAGAGGGAGGAAGAAATCGCCGGCGACAATGCCGGAGAGGTGAAAAAGCCGAAGGTGGAGGAAAGCGTCGAGAAGGCGGCGCTTGGTCCGGTGAGTTTAGGCCCAAAGAGCTTTGGATCATCGGTGGAGCTGTTCGATTACTTCTACAACTTCCTTCACAACTGGCCTGCTAACGTGAATGTGAACCAGTACGAGAAGATGGTGCTGATGGATTTGATTAAGAAGGGGCATGTAGAACCGACGAAAAAGATAGGGTGTGGAATCGGTGCTTTCCAAATTCAATACCACCCTATGTGGAAAAGCAAATGCTTCTTCCTCATTCGGGAGGATGGCTCAACCGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCTCTGCCTGAAAACTTGAAGTTAAAGTCTGATGCAAACAGGTTGTCGGGTGGCGGCGGTAAGCACCGCGGTGGAGGACGAGGTGGCGGACGCGGAAGAGGAGGTAGGGGGAGAAACTGA

Protein sequence

MAEETTPQPAGKDPEVSNPGADDTEVKNGDANPKREREEEIAGDNAGEVKKPKVEESVEKAALGPVSLGPKSFGSSVELFDYFYNFLHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGSTDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN

Homology

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BLAST of Sed0006743 vs. NCBI nr
Match: KAG7021514.1 (Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-72
Identity = 158/227 (69.60%), Postives = 168/227 (74.01%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ A   PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSEANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            A D+AGE KKPKVE+SVE+  L             GPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGR 195
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGGGR R
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGGGRWR 226

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BLAST of Sed0006743 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-71
Identity = 160/233 (68.67%), Postives = 170/233 (72.96%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ A   PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            A D+AGE KKPKVE+SVE+  L             GPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 201
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGG    GGR RN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGG----GGRWRN 228

[Close]

BLAST of Sed0006743 vs. NCBI nr
Match: XP_022972943.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-70
Identity = 159/233 (68.24%), Postives = 169/233 (72.53%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ A   PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            AGD  GE KKPKVE+SVE+  L             GPVSLGPKSFGSSVELF+YFYNFL
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 201
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGG    GGR RN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGG----GGRWRN 228

[Close]

BLAST of Sed0006743 vs. NCBI nr
Match: KAG6587539.1 (Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-69
Identity = 150/205 (73.17%), Postives = 162/205 (79.02%), Query Frame = 0


Query: 3   EETTPQPAGKDPEVSNPGADDTEVKNGDANPKREREEEIAGDNAGEVKKPKVEESVEKAA 62
           E T P+ +G D E +    +   V NGDAN KREREEE A D+AGEVKKPKVE+SVE+  
Sbjct: 4   ESTEPKVSGGDSEAN----EAAPVTNGDANSKREREEEGADDHAGEVKKPKVEKSVEEER 63

Query: 63  L-------------GPVSLGPKSFGSSVELFDYFYNFLHNWPANVNVNQYEKMVLMDLIK 122
           L             GPVSLGPKSFGSSVELFDYFYNFLH WPAN+NVNQYE MVL+DLIK
Sbjct: 64  LEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQYELMVLLDLIK 123

Query: 123 KGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGSTDDFSFRKCVDHILPLPENLKL 182
           KGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS DDFSFRKCVDHILPLPENLK 
Sbjct: 124 KGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGSADDFSFRKCVDHILPLPENLKT 183

Query: 183 KSDANRLSGGGGKHRGGGRGGGRGR 195
            SDANR + GGGKHRGGGRGGGR R
Sbjct: 184 ISDANR-ALGGGKHRGGGRGGGRWR 203

[Close]

BLAST of Sed0006743 vs. NCBI nr
Match: XP_023529405.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-69
Identity = 158/233 (67.81%), Postives = 167/233 (71.67%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ     PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            AGD  GE KK KVE+SVE+  L             GPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 201
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGG    GGR RN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGG----GGRWRN 228

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BLAST of Sed0006743 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 115/197 (58.38%), Postives = 134/197 (68.02%), Query Frame = 0


Query: 2   AEETTPQPAGKDPEVSNPGADDTEVKNGDANPKREREEEIAGDNAGEVKKPKVEESVEKA 61
           AE    Q    + E + P A+      GD   KREREE    +N GE KK KV E  EK+
Sbjct: 13  AEVNPDQKVDMEVETATPKAE-----TGD--EKREREETEEEENGGESKKQKVGEE-EKS 72

Query: 62  ALGPVSLGPKSFGSSVELFDYFYNFLHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGC 121
             GPV LGPK F +SV +FDYF  FLH WP +++VN+YE MVL+DLIKKGH EP KKIG 
Sbjct: 73  --GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGG 132

Query: 122 GIGAFQIQYHPMWKSKCFFLIREDGSTDDFSFRKCVDHILPLPENLKLKSDANRLSGGGG 181
           GI  FQ++ HPMWKS+CFFL+RED + DDFSFRKCVD ILPLPEN+K    AN    GGG
Sbjct: 133 GIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMKTPG-ANGNGHGGG 192

Query: 182 KHRGGGRGGGRGRGGRG 199
           +  GGGR GGRG GGRG
Sbjct: 193 RGGGGGRRGGRG-GGRG 197

[Close]

BLAST of Sed0006743 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07
Identity = 35/128 (27.34%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 37  REEEIAGDNAGEVKKPKVEESVEKAALGPVSLGPKSFGSSVELFDYFYNFLHN--WPANV 96
           R   IA + + E ++ + EE+ E      V    K    +V L  +    LH+  +    
Sbjct: 71  RRPRIASEESSEEEEEEEEENSEGDEF--VDWEDKILEVTVPLVGFVRMILHSGKYANRD 130

Query: 97  NVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGSTDDFSF 156
            ++   +  +++++   H E  KKIGCGI    + +HP ++ S+C F++R+DG   DFS+
Sbjct: 131 RLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSY 190

Query: 157 RKCVDHIL 162
            KC+  ++
Sbjct: 191 WKCIKGLI 196

[Close]

BLAST of Sed0006743 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-06
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 99  YEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGSTDDFSFRKCV 158
           +++ +L  L+   H E  KKIG G+    + YHP ++ S+C F++R+DG T DFS+ KC+
Sbjct: 139 HQRTILQRLLPY-HPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCI 198

Query: 159 DHIL 162
             ++
Sbjct: 199 KGLI 201

[Close]

BLAST of Sed0006743 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 20/73 (27.40%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 90   WPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGST 149
            +P    ++  +K  +++ I   H +   K+G G+    +  H ++  S+CFF++  DG+ 
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 150  DDFSFRKCVDHIL 162
             DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831

[Close]

BLAST of Sed0006743 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.8e-04
Identity = 22/71 (30.99%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 87   LHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDG 146
            LH++  N  +N+ ++  L+ ++ + H    +KIG G+   ++       S CF ++R DG
Sbjct: 1350 LHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDG 1409

Query: 147  STDDFSFRKCV 158
            + +DFS+ KCV
Sbjct: 1410 TFEDFSYHKCV 1419

[Close]

BLAST of Sed0006743 vs. ExPASy TrEMBL
Match: A0A6J1F569 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.2e-71
Identity = 160/233 (68.67%), Postives = 170/233 (72.96%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ A   PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            A D+AGE KKPKVE+SVE+  L             GPVSLGPKSFGSSVELFDYFYNFL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 201
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGG    GGR RN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGG----GGRWRN 228

[Close]

BLAST of Sed0006743 vs. ExPASy TrEMBL
Match: A0A6J1IBL1 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.4e-71
Identity = 159/233 (68.24%), Postives = 169/233 (72.53%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTE--------------------VKNGDANPKREREEE 60
           MAEET PQ A   PEV+N  A+D E                    V NGDAN KREREEE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  IAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYFYNFL 120
            AGD  GE KKPKVE+SVE+  L             GPVSLGPKSFGSSVELF+YFYNFL
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           H WPAN+NVNQYE MVL+DLIKKGHVEP KKIGCG+ A QI+YHPMWKSKCFFLIREDGS
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 201
            DDFSFRKCVDHILPLPENLK  SDANR + GGGKHRGGGRGG    GGR RN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANR-ALGGGKHRGGGRGG----GGRWRN 228

[Close]

BLAST of Sed0006743 vs. ExPASy TrEMBL
Match: A0A6J1C0K4 (protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.8e-68
Identity = 153/239 (64.02%), Postives = 174/239 (72.80%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTEVK------------------------NGDANPKRE 60
           MAEETTPQ A  DPEV+N   +D E++                        NGDAN KRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REEEIAGDNAGEVKKPKVEESVEKAAL-------------GPVSLGPKSFGSSVELFDYF 120
           REEE A +N GE KKPKVE+SVE+  +             GPVSLGPKSFGSSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YNFLHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIR 180
           Y FLH WPAN+N+N+YE+MVL++L+KKGHVEP KKIGCGI AFQI+ HP +KSKC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 EDGSTDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGR--GGGRGRGGRGRN 201
           ED S DDFSFRKCVDHILPLPENLK+KSDANR + GG KHRGGGR  GGGRGRGGR RN
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANR-ALGGCKHRGGGRGGGGGRGRGGRSRN 238

[Close]

BLAST of Sed0006743 vs. ExPASy TrEMBL
Match: A0A5A7UQ03 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.5e-64
Identity = 151/234 (64.53%), Postives = 168/234 (71.79%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTEVK--------------------NGDANPKREREEE 60
           MAEET PQ    DPEV+N G +D E++                    NGDAN KREREE 
Sbjct: 1   MAEETIPQ---LDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREES 60

Query: 61  IAGDNAGEVKKPKVEESVEK---AALG----------PVSLGPKSFGSSVELFDYFYNFL 120
            A D  G+ KK K+E+SVE+     LG          PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  -ADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           HNWP N+NVNQYE+MVL+DL+KKGH+EP KKIGCGI AFQI++HP+WKSKCFFLIRED S
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGR--GGGRGRGGRGR 200
            DDFSFRKCVDHILPLPEN K KSDANR + GGGKHRGGGR  GGGRGRGG GR
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANR-ALGGGKHRGGGRGGGGGRGRGGGGR 229

[Close]

BLAST of Sed0006743 vs. ExPASy TrEMBL
Match: A0A1S3BWT9 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.5e-64
Identity = 151/234 (64.53%), Postives = 168/234 (71.79%), Query Frame = 0


Query: 1   MAEETTPQPAGKDPEVSNPGADDTEVK--------------------NGDANPKREREEE 60
           MAEET PQ    DPEV+N G +D E++                    NGDAN KREREE 
Sbjct: 1   MAEETIPQ---LDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREES 60

Query: 61  IAGDNAGEVKKPKVEESVEK---AALG----------PVSLGPKSFGSSVELFDYFYNFL 120
            A D  G+ KK K+E+SVE+     LG          PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  -ADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGS 180
           HNWP N+NVNQYE+MVL+DL+KKGH+EP KKIGCGI AFQI++HP+WKSKCFFLIRED S
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 TDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGR--GGGRGRGGRGR 200
            DDFSFRKCVDHILPLPEN K KSDANR + GGGKHRGGGR  GGGRGRGG GR
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANR-ALGGGKHRGGGRGGGGGRGRGGGGR 229

[Close]

BLAST of Sed0006743 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 115/197 (58.38%), Postives = 134/197 (68.02%), Query Frame = 0


Query: 2   AEETTPQPAGKDPEVSNPGADDTEVKNGDANPKREREEEIAGDNAGEVKKPKVEESVEKA 61
           AE    Q    + E + P A+      GD   KREREE    +N GE KK KV E  EK+
Sbjct: 13  AEVNPDQKVDMEVETATPKAE-----TGD--EKREREETEEEENGGESKKQKVGEE-EKS 72

Query: 62  ALGPVSLGPKSFGSSVELFDYFYNFLHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGC 121
             GPV LGPK F +SV +FDYF  FLH WP +++VN+YE MVL+DLIKKGH EP KKIG 
Sbjct: 73  --GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGG 132

Query: 122 GIGAFQIQYHPMWKSKCFFLIREDGSTDDFSFRKCVDHILPLPENLKLKSDANRLSGGGG 181
           GI  FQ++ HPMWKS+CFFL+RED + DDFSFRKCVD ILPLPEN+K    AN    GGG
Sbjct: 133 GIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMKTPG-ANGNGHGGG 192

Query: 182 KHRGGGRGGGRGRGGRG 199
           +  GGGR GGRG GGRG
Sbjct: 193 RGGGGGRRGGRG-GGRG 197

[Close]

BLAST of Sed0006743 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 35/128 (27.34%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 37  REEEIAGDNAGEVKKPKVEESVEKAALGPVSLGPKSFGSSVELFDYFYNFLHN--WPANV 96
           R   IA + + E ++ + EE+ E      V    K    +V L  +    LH+  +    
Sbjct: 71  RRPRIASEESSEEEEEEEEENSEGDEF--VDWEDKILEVTVPLVGFVRMILHSGKYANRD 130

Query: 97  NVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGSTDDFSF 156
            ++   +  +++++   H E  KKIGCGI    + +HP ++ S+C F++R+DG   DFS+
Sbjct: 131 RLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSY 190

Query: 157 RKCVDHIL 162
            KC+  ++
Sbjct: 191 WKCIKGLI 196

[Close]

BLAST of Sed0006743 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 35/128 (27.34%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 37  REEEIAGDNAGEVKKPKVEESVEKAALGPVSLGPKSFGSSVELFDYFYNFLHN--WPANV 96
           R   IA + + E ++ + EE+ E      V    K    +V L  +    LH+  +    
Sbjct: 71  RRPRIASEESSEEEEEEEEENSEGDEF--VDWEDKILEVTVPLVGFVRMILHSGKYANRD 130

Query: 97  NVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGSTDDFSF 156
            ++   +  +++++   H E  KKIGCGI    + +HP ++ S+C F++R+DG   DFS+
Sbjct: 131 RLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSY 190

Query: 157 RKCVDHIL 162
            KC+  ++
Sbjct: 191 WKCIKGLI 196

[Close]

BLAST of Sed0006743 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 48.5 bits (114), Expect = 7.2e-06
Identity = 20/73 (27.40%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 90   WPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWK-SKCFFLIREDGST 149
            +P    ++  +K  +++ I   H +   K+G G+    +  H ++  S+CFF++  DG+ 
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 150  DDFSFRKCVDHIL 162
             DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831

[Close]

BLAST of Sed0006743 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05
Identity = 22/71 (30.99%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 87   LHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDG 146
            LH++  N  +N+ ++  L+ ++ + H    +KIG G+   ++       S CF ++R DG
Sbjct: 1350 LHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDG 1409

Query: 147  STDDFSFRKCV 158
            + +DFS+ KCV
Sbjct: 1410 TFEDFSYHKCV 1419

The following BLAST results are available for this feature:

BLAST of Sed0006743 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021514.1	5.4e-72	69.60	Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022933555.1	4.6e-71	68.67	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]
XP_022972943.1	1.3e-70	68.24	protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima]	[more]
KAG6587539.1	1.1e-69	73.17	Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023529405.1	2.5e-69	67.81	protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0006743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L557	1.8e-46	58.38	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
Q9C642	2.8e-07	27.34	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	2.4e-06	37.50	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	1.0e-04	27.40	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9LQ02	3.8e-04	30.99	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]

BLAST of Sed0006743 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F569	2.2e-71	68.67	protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 ...	[more]
A0A6J1IBL1	6.4e-71	68.24	protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE...	[more]
A0A6J1C0K4	1.8e-68	64.02	protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4...	[more]
A0A5A7UQ03	4.5e-64	64.53	Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 P...	[more]
A0A1S3BWT9	4.5e-64	64.53	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1	[more]

BLAST of Sed0006743 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62440.1	1.3e-47	58.38	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	2.0e-08	27.34	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	2.0e-08	27.34	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	7.2e-06	27.40	nuclear RNA polymerase D1B	[more]
AT1G63020.1	2.7e-05	30.99	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.40		coord: 61..160 e-value: 3.4E-26 score: 93.6
None	No IPR available	PFAM	PF11523	DUF3223	coord: 86..157 e-value: 6.2E-24 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR33415:SF12	PROTEIN EMBRYO DEFECTIVE 514	coord: 19..192
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 19..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006743.1	Sed0006743.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017126	nucleologenesis
cellular_component	GO:0005634	nucleus