Sed0006679 (gene) Chayote v1

Overview


Name	Sed0006679
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-directed RNA polymerase
Location	LG12: 5775608 .. 5776010 (+)
RNA-Seq Expression	Sed0006679
Synteny	Sed0006679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGCTTCGCCTCCATTCTTCGCCGAAGAAACGTAAGTTCCTACCCTTTTCGATTTTGCCGCTTTCATTCTCTGCTTTTTAACTATCCTGCATTTCAACACTCTTCTTCTACAATGCCACCATTTTCAGATATTGAACAGACTTTTCTCTTTCTCTTTCACTTTCAAAATATTGAGAAATAAATCTTTTCAACACCATTTCAAGTTCAAGTTTTTCCCCCCCTTCAATTTTTGGGGTTATTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

mRNA sequence

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGCTTCGCCTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGCTTCGCCTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

Protein sequence

MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

Homology

[Close]

BLAST of Sed0006679 vs. NCBI nr
Match: KGN56989.1 (hypothetical protein Csa_010650 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 7.2e-28
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLW RLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Sed0006679 vs. NCBI nr
Match: KAG6597448.1 (hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLW RLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

[Close]

BLAST of Sed0006679 vs. NCBI nr
Match: PHT38775.1 (hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical protein T459_08075 [Capsicum annuum])

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Sed0006679 vs. NCBI nr
Match: PKI42574.1 (hypothetical protein CRG98_037041 [Punica granatum])

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-23
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESH-TPLPP 60
          MGWL+SL SP+KKLWLRLH++PKKRRGIYILYEDVKSCPCEDVHVLWSILVESH  PLP 
Sbjct: 1  MGWLRSLLSPVKKLWLRLHTTPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHPPPLPW 60

Query: 61 KQ 62
          KQ
Sbjct: 61 KQ 62

[Close]

BLAST of Sed0006679 vs. NCBI nr
Match: KAG5587814.1 (hypothetical protein H5410_048248 [Solanum commersonii] >TMW85068.1 hypothetical protein EJD97_023849 [Solanum chilense])

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-23
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Sed0006679 vs. ExPASy TrEMBL
Match: A0A0A0L7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLW RLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Sed0006679 vs. ExPASy TrEMBL
Match: A0A2G2W0L8 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Sed0006679 vs. ExPASy TrEMBL
Match: A0A2G2ZVG2 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Sed0006679 vs. ExPASy TrEMBL
Match: A0A0V0GKY9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Sed0006679 vs. ExPASy TrEMBL
Match: M1CYA3 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWLRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLW RLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

The following BLAST results are available for this feature:

BLAST of Sed0006679 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56989.1	7.2e-28	98.36	hypothetical protein Csa_010650 [Cucumis sativus]	[more]
KAG6597448.1	2.9e-24	96.43	hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PHT38775.1	1.1e-23	88.71	hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical pr...	[more]
PKI42574.1	9.2e-23	87.10	hypothetical protein CRG98_037041 [Punica granatum]	[more]
KAG5587814.1	9.2e-23	87.10	hypothetical protein H5410_048248 [Solanum commersonii] >TMW85068.1 hypothetical...	[more]

BLAST of Sed0006679 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5	3.5e-28	98.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1	[more]
A0A2G2W0L8	5.2e-24	88.71	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1	[more]
A0A2G2ZVG2	5.2e-24	88.71	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1	[more]
A0A0V0GKY9	4.4e-23	87.10	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
M1CYA3	4.4e-23	87.10	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of Sed0006679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..59
None	No IPR available	PANTHER	PTHR33181:SF7	OS07G0572400 PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006679.1	Sed0006679.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001172	transcription, RNA-templated
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity