Sed0006668 (gene) Chayote v1

Overview


Name	Sed0006668
Type	gene
Organism	Sechium edule (Chayote v1)
Description	classical arabinogalactan protein 9-like
Location	LG10: 36397365 .. 36398986 (-)
RNA-Seq Expression	Sed0006668
Synteny	Sed0006668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCAATCAAATTTGTCTAATTTTCTCTTATTTCACAAAAACAACAAATAATTATGAATTGTCAAGCTTTGTTGTCTTTCACTTTGATCTTTATTGCCCTCGCCGGCGCCGCCGCTCAGTCCCCGCCCGCCACCCCTCCTCCGGCCACCACTCCCCCTCCGGCATCCCCGCCGCCGGCATCACCACCTCCGGCCACACCACCACCGGCGTCTCCGCCACCAGCCACCCCGCCTCCGGCTTCTCCTCCACCGGCCACCCCGCCTCCTGCTTCCCCTCCTCCGGCGACCCCACCGCCGGCATCCCCTCCTCCGGCGTCTCCGCCACCGGCTTCTCCACCGCCGGCCAGTCCTCCACCCGCAACCCCACCTCCTGCGCCACTGGCATCTCCACCGGTGGCGGTTCCGGCGCCTGCACCGAGTAAGAAGAAGACGAAGGCGGCTCCGGTTTCATCGCCATTGTCGAGCCCGCCGTTGCCGTCAGCGGACGCGCCAGGACCGGCCGGTTCTGATTCTCCCACCCCATCTCAGAGCGACAATGTAAGTCCCCTCACCAAAAATAAGCATCAACCCAAAGATTATAGTAAATGGATTATAAATTTAATTATTTCAATTCAACATTTATTTTATTTTAGTTTAAAACGAGGGAGAGATTCAAACCGATAACCTTTTAATCATAAATATATCGATCTTATTACTTCTATGAACATGATTTTTCAATAAAATGGAGGATCATACAAAAAATGACTAGGCAAAACTTTGAAGACATGAGTTATACCCTCTATATCATATTTGCAAAAAAAAAAAAAAAAAAAAAAATTCTGGTGGCAAACCTATTGTTTAAAAATATTCCATCTCATATGTTACTGAGTTCAAAATTAGAAAATTGTAAAATTATTTTTTTAAAAAGAAATTGAAAAATAGTTAGTTAGTTTTGTACTTATCATTATTAATATAAATATATTTTTATCAAAAAAGCAGAATTCTATGAACACGAATAAAAAAGAACACCTTGGGGCTTAAATAATTTGTCTTATAATCCTACTTTTGTTTTAATTTAATTTTTATGATTTCAATCGTAGGTTGGTTACTAGGTGACAATAAGTTAATATTTCTTATTTAACAGATTGTGCTAGTGTGGTTAGTAAAATGTGTGTTTATGATCAAAGTAGTATAAATTCTCATTTTCTTCTATTGTTGTTGAACTCAAACAAAAATAATATTATATATCTATATCGATCACTAAGTTTATATAAGTCATTAACATTGTTTATAAAATATTGACATGACACATTGATTAATTATCGCAGAGCGGAGTCGAAAAAGTGTGGCGAAAGGAGATGATGGTTGGTAGCATGTTGATTGGAATGGGATATGTGTTTATGATGCTTTAGAAGGAAGGGATGAACATATTTAATGTGTCTCTTTACCTTTTGCAGTGCCCCCTATTTTTGTTGTCTGTTATTTTTGTTGCTTTATATTTCATTTGAATCATTTTGATTATTATTAGCCCCCTCATGTCTTGTTTGGGGCTTTTTGATTTATTATCTTAGCCTTTGAACTCTCTGATCTCTCTTTATATATAAATATATTAATTCATTTGCTTGGATTCTTTTGAGATAAAAA

mRNA sequence

CCTCAATCAAATTTGTCTAATTTTCTCTTATTTCACAAAAACAACAAATAATTATGAATTGTCAAGCTTTGTTGTCTTTCACTTTGATCTTTATTGCCCTCGCCGGCGCCGCCGCTCAGTCCCCGCCCGCCACCCCTCCTCCGGCCACCACTCCCCCTCCGGCATCCCCGCCGCCGGCATCACCACCTCCGGCCACACCACCACCGGCGTCTCCGCCACCAGCCACCCCGCCTCCGGCTTCTCCTCCACCGGCCACCCCGCCTCCTGCTTCCCCTCCTCCGGCGACCCCACCGCCGGCATCCCCTCCTCCGGCGTCTCCGCCACCGGCTTCTCCACCGCCGGCCAGTCCTCCACCCGCAACCCCACCTCCTGCGCCACTGGCATCTCCACCGGTGGCGGTTCCGGCGCCTGCACCGAGTAAGAAGAAGACGAAGGCGGCTCCGGTTTCATCGCCATTGTCGAGCCCGCCGTTGCCGTCAGCGGACGCGCCAGGACCGGCCGGTTCTGATTCTCCCACCCCATCTCAGAGCGACAATAGCGGAGTCGAAAAAGTGTGGCGAAAGGAGATGATGGTTGGTAGCATGTTGATTGGAATGGGATATGTGTTTATGATGCTTTAGAAGGAAGGGATGAACATATTTAATGTGTCTCTTTACCTTTTGCAGTGCCCCCTATTTTTGTTGTCTGTTATTTTTGTTGCTTTATATTTCATTTGAATCATTTTGATTATTATTAGCCCCCTCATGTCTTGTTTGGGGCTTTTTGATTTATTATCTTAGCCTTTGAACTCTCTGATCTCTCTTTATATATAAATATATTAATTCATTTGCTTGGATTCTTTTGAGATAAAAA

Coding sequence (CDS)

ATGAATTGTCAAGCTTTGTTGTCTTTCACTTTGATCTTTATTGCCCTCGCCGGCGCCGCCGCTCAGTCCCCGCCCGCCACCCCTCCTCCGGCCACCACTCCCCCTCCGGCATCCCCGCCGCCGGCATCACCACCTCCGGCCACACCACCACCGGCGTCTCCGCCACCAGCCACCCCGCCTCCGGCTTCTCCTCCACCGGCCACCCCGCCTCCTGCTTCCCCTCCTCCGGCGACCCCACCGCCGGCATCCCCTCCTCCGGCGTCTCCGCCACCGGCTTCTCCACCGCCGGCCAGTCCTCCACCCGCAACCCCACCTCCTGCGCCACTGGCATCTCCACCGGTGGCGGTTCCGGCGCCTGCACCGAGTAAGAAGAAGACGAAGGCGGCTCCGGTTTCATCGCCATTGTCGAGCCCGCCGTTGCCGTCAGCGGACGCGCCAGGACCGGCCGGTTCTGATTCTCCCACCCCATCTCAGAGCGACAATAGCGGAGTCGAAAAAGTGTGGCGAAAGGAGATGATGGTTGGTAGCATGTTGATTGGAATGGGATATGTGTTTATGATGCTTTAG

Protein sequence

MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMML

Homology

[Close]

BLAST of Sed0006668 vs. NCBI nr
Match: XP_023553858.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 9.3e-50
Identity = 156/205 (76.10%), Postives = 168/205 (81.95%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPATTPPPASPPPA 60
           M+ QAL  FTLI IA A A AQ                   PPATPPP ++PPPA+PPPA
Sbjct: 1   MDPQALFCFTLISIAFAVAGAQPPSSPPTATLAPPTTTTAPPPATPPPVSSPPPATPPPA 60

Query: 61  SPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPA 120
           SPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA+PPPASPPPA+PPPA
Sbjct: 61  SPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPA 120

Query: 121 TPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQSDNS 180
           TPPP PLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+DNS
Sbjct: 121 TPPPTPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNS 180

Query: 181 GVEKVWRKEMMVGSMLIGMGYVFMM 188
           GVEK WRKE MVGSMLIGMGYV MM
Sbjct: 181 GVEKSWRKETMVGSMLIGMGYVLMM 205

[Close]

BLAST of Sed0006668 vs. NCBI nr
Match: XP_022952421.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 153/208 (73.56%), Postives = 169/208 (81.25%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASP 60
           M+ QAL  FTLIF+A A A AQ                  PPATPPP + P    PPA+P
Sbjct: 1   MDPQALFCFTLIFVAFAVAGAQPPSSPPTAXXXPTTTTAPPPATPPPVSAPPPATPPATP 60

Query: 61  PPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASP 120
           PPASPPPATPPPASPPPATPPPASPPPA+PPPA+PPPA+PPPA+PPPASPPPA+PPPA+P
Sbjct: 61  PPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPATP 120

Query: 121 PPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQS 180
           PPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+
Sbjct: 121 PPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQN 180

Query: 181 DNSGVEKVWRKEMMVGSMLIGMGYVFMM 188
           DNSGVEK WRKE MVGSMLIGMGYV MM
Sbjct: 181 DNSGVEKSWRKETMVGSMLIGMGYVLMM 208

[Close]

BLAST of Sed0006668 vs. NCBI nr
Match: KAG6571935.1 (hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 157/215 (73.02%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQ------------------SPPATPPPAT-----TPPPA 60
           M+ QAL   TLI IA A A AQ                   PPATPPP +     TPPPA
Sbjct: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60

Query: 61  SPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPA 120
           +PPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120

Query: 121 SPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSD 180
           +PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +
Sbjct: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180

Query: 181 SPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMM 188
           SPTPSQ+DNSGVEK WRKE MVGSMLIGMGYV MM
Sbjct: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215

[Close]

BLAST of Sed0006668 vs. NCBI nr
Match: KAG7011623.1 (hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 9.0e-45
Identity = 142/174 (81.61%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 19  AAAQSPPATPPPATTPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT 78
           ++A  PP + PP  TPPPA+PPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT
Sbjct: 47  SSATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPAT 106

Query: 79  PPPAS-----PPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSS 138
           PPPAS     PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP  +
Sbjct: 107 PPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPA 166

Query: 139 PLSSPPLPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMM 188
           P+SSPP+PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE MVGSMLIGMGYV MM
Sbjct: 167 PVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 220

[Close]

BLAST of Sed0006668 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa] >TYK06805.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 4.2e-42
Identity = 154/200 (77.00%), Postives = 166/200 (83.00%), Query Frame = 0


Query: 6   LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPP 65
           LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPP
Sbjct: 8   LLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAATPP 67

Query: 66  PASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLA 125
           PASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPPPASPPPASPPPA PPPAPLA
Sbjct: 68  PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLA 127

Query: 126 SPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVW 185
           SPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVW
Sbjct: 128 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVW 187

Query: 186 RKEMMVGSMLIGMGYVFMML 189
           RKE MVGS++IGMGYVF+ML
Sbjct: 188 RKESMVGSIVIGMGYVFLML 207

[Close]

BLAST of Sed0006668 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-10
Identity = 105/194 (54.12%), Postives = 125/194 (64.43%), Query Frame = 0


Query: 11  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPP 70
           +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPP
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPP 69

Query: 71  ASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASPPP-ATPPPAPLASPPVAVPA 130
           A+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+PPP ATPPPAPLASPP  VPA
Sbjct: 70  ANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLASPPAQVPA 129

Query: 131 PAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMV 189
           PAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS    +D +G  K      MV
Sbjct: 130 PAPTTKPDSPSP--SPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK------MV 189

[Close]

BLAST of Sed0006668 vs. ExPASy TrEMBL
Match: A0A6J1GK65 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111455113 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.5e-48
Identity = 153/208 (73.56%), Postives = 169/208 (81.25%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQ-----------------SPPATPPPATTP----PPASP 60
           M+ QAL  FTLIF+A A A AQ                  PPATPPP + P    PPA+P
Sbjct: 1   MDPQALFCFTLIFVAFAVAGAQPPSSPPTAXXXPTTTTAPPPATPPPVSAPPPATPPATP 60

Query: 61  PPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASP 120
           PPASPPPATPPPASPPPATPPPASPPPA+PPPA+PPPA+PPPA+PPPASPPPA+PPPA+P
Sbjct: 61  PPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPATP 120

Query: 121 PPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPPLPSADAPGPAGSDSPTPSQS 180
           PPATPPPAPLASPP AVPAPAPSKKK KAAP  +P+SSPP+PSA+ PGPAG +SPTPSQ+
Sbjct: 121 PPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQN 180

Query: 181 DNSGVEKVWRKEMMVGSMLIGMGYVFMM 188
           DNSGVEK WRKE MVGSMLIGMGYV MM
Sbjct: 181 DNSGVEKSWRKETMVGSMLIGMGYVLMM 208

[Close]

BLAST of Sed0006668 vs. ExPASy TrEMBL
Match: A0A5A7SJX5 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001070 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 154/200 (77.00%), Postives = 166/200 (83.00%), Query Frame = 0


Query: 6   LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPP 65
           LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPP
Sbjct: 8   LLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAATPP 67

Query: 66  PASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLA 125
           PASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPPPASPPPASPPPA PPPAPLA
Sbjct: 68  PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLA 127

Query: 126 SPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVW 185
           SPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVW
Sbjct: 128 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVW 187

Query: 186 RKEMMVGSMLIGMGYVFMML 189
           RKE MVGS++IGMGYVF+ML
Sbjct: 188 RKESMVGSIVIGMGYVFLML 207

[Close]

BLAST of Sed0006668 vs. ExPASy TrEMBL
Match: A0A1S3BZW9 (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 154/200 (77.00%), Postives = 166/200 (83.00%), Query Frame = 0


Query: 6   LLSFTLIFIALAGAAAQ----------SPPAT--PPPATTPPP-ASPPPAS--PPPATPP 65
           LL FT I IA A A AQ          SPP T  PPPA+TPPP +SPPPA+  PP ATPP
Sbjct: 8   LLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAATPP 67

Query: 66  PASPPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPAPLA 125
           PASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPASPPPASPPPASPPPA PPPAPLA
Sbjct: 68  PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLA 127

Query: 126 SPPVAVPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVW 185
           SPP AVPAPAPSKKK K AAP  +P+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVW
Sbjct: 128 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVW 187

Query: 186 RKEMMVGSMLIGMGYVFMML 189
           RKE MVGS++IGMGYVF+ML
Sbjct: 188 RKESMVGSIVIGMGYVFLML 207

[Close]

BLAST of Sed0006668 vs. ExPASy TrEMBL
Match: A0A0A0K6D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 152/195 (77.95%), Postives = 167/195 (85.64%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP--ASPPPAS--PPPATPPPASPPP 60
           M+ +ALL FTLI IA   A AQS P++PP AT  PP  ++PPP S  PP ATPPPASPPP
Sbjct: 1   MDPRALLCFTLISIAFPLARAQS-PSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPP 60

Query: 61  ATPPPASPPPATPPPASPPPATPPPASPPPASPPPASPPPAS-PPPATPPPAPLASPPVA 120
           A+PPPASPPPATPPPASPPPA+PPPASPPPASPPPA+PPPAS PPPATPPPAPLASPP A
Sbjct: 61  ASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTA 120

Query: 121 VPAPAPSKKKTK-AAPVSSPLSSPPLPSADAPGPAGSD-SPTPSQSDNSGVEKVWRKEMM 180
           VPAPAPSKKK K AAP  SP+SSPP PS +APGPAG D SPTPSQ+DNSGVEKVWRKE M
Sbjct: 121 VPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESM 180

Query: 181 VGSMLIGMGYVFMML 189
           VGS++IGMGYVF+ML
Sbjct: 181 VGSIVIGMGYVFLML 194

[Close]

BLAST of Sed0006668 vs. ExPASy TrEMBL
Match: A0A6J1I8J9 (classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111470982 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 140/228 (61.40%), Postives = 153/228 (67.11%), Query Frame = 0


Query: 1   MNCQALLSFTLIFIALAGAAAQSPPATPPPATTPPP------------------------ 60
           M+ QAL  FTLI IA A A AQ PP++PP AT  PP                        
Sbjct: 1   MDPQALFCFTLISIAFAVAGAQ-PPSSPPTATPAPPXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  -----------------ASPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATP 120
                                      ATPPPASPPPATPPPASPPPATPPPASPPPAT 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXATPPPASPPPATPPPASPPPATPPPASPPPAT- 120

Query: 121 PPASPPPASPPPASPPPASPPPATPPPAPLASPPVAVPAPAPSKKKTKAAPVSSPLSSPP 180
               PPPASPPPA+PPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP S+P+SSPP
Sbjct: 121 ----PPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGSAPVSSPP 180

Query: 181 LPSADAPGPAGSDSPTPSQSDNSGVEKVWRKEMMVGSMLIGMGYVFMM 188
           +PSA+ PGPAG +SPTPSQ+DNSGVEK WRKE ++GSMLIGMGYV MM
Sbjct: 181 MPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETVLGSMLIGMGYVLMM 222

[Close]

BLAST of Sed0006668 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 105/194 (54.12%), Postives = 125/194 (64.43%), Query Frame = 0


Query: 11  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPP 70
           +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPP
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPP 69

Query: 71  ASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASPPP-ATPPPAPLASPPVAVPA 130
           A+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+PPP ATPPPAPLASPP  VPA
Sbjct: 70  ANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLASPPAQVPA 129

Query: 131 PAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQ---SDNSGVEKVWRKEMMV 189
           PAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS    +D +G  K      MV
Sbjct: 130 PAPTTKPDSPSP--SPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK------MV 189

[Close]

BLAST of Sed0006668 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 97/163 (59.51%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 11  LIFIALAGAAAQSP-------PATPPPATTPPPASPPPASPPPATPPPASPPPAT--PPP 70
           +  + +AG   Q+P       PA P P T PP A+PPP S PP  P   SPPP T  PPP
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPP--PVTTSPPPVTTAPPP 69

Query: 71  ASPPP--ATPPPASPPPATPPPASPPPASPPPASPPPASPPP-ATPPPAPLASPPVAVPA 130
           A+PPP  ++PPPASPPPATPPP + PP  PP ASPPPA+PPP ATPPPAPLASPP  VPA
Sbjct: 70  ANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLASPPAQVPA 129

Query: 131 PAPSKKKTKAAPVSSPLSSPPLPSADAPGPA-GSDSPTPSQSD 161
           PAP+ K    +P  SP SSPPLPS+DAPGP+  S SP PS +D
Sbjct: 130 PAPTTKPDSPSP--SPSSSPPLPSSDAPGPSTDSISPAPSPTD 166

The following BLAST results are available for this feature:

BLAST of Sed0006668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553858.1	9.3e-50	76.10	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022952421.1	1.1e-47	73.56	classical arabinogalactan protein 9-like [Cucurbita moschata]	[more]
KAG6571935.1	2.8e-46	73.02	hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011623.1	9.0e-45	81.61	hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008455018.1	4.2e-42	77.00	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 clas...	[more]

BLAST of Sed0006668 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5S0	2.6e-10	54.12	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]

BLAST of Sed0006668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK65	5.5e-48	73.56	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7SJX5	2.0e-42	77.00	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BZW9	2.0e-42	77.00	classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4...	[more]
A0A0A0K6D8	1.3e-41	77.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1	[more]
A0A6J1I8J9	1.3e-33	61.40	classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Sed0006668 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14890.1	1.8e-11	54.12	arabinogalactan protein 9	[more]
AT2G14890.2	2.4e-11	59.51	arabinogalactan protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 65..90 score: 42.31 coord: 24..40 score: 38.82 coord: 43..60 score: 45.56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..166
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 63..188
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 23..72
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 63..188
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 23..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006668.1	Sed0006668.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane