Sed0006649 (gene) Chayote v1

Overview


Name	Sed0006649
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG08: 1946621 .. 1949751 (+)
RNA-Seq Expression	Sed0006649
Synteny	Sed0006649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCAAACAAGCAACCTGGTAAGTCGCAAACCGACCGATTGGTCGAAATAGAAGAGCAACTGCTCTTCTTGAGAGAAGTTCCTGACAACATCCGGTTCTTGGAATCTCGAATGGAAGAGATCGAGACCAAGACCGGCCAAATTGACGCTGTAGTTGGCCGCGTGGACGGGTTGCCCGTCCAAGAGTTGATGCTGAGGGTTGAGTCCCTAGAAGAGAAAGCTGCACGACCCAATGTCCTGGAACGGGGGGACAATTCGTCGAGCTCTGTGGCCCATATGGAAGAGCGAGTCGATGTCCTGGACAACTCGCAAAAGACGCTAATTCAGATGGTCACGGACCTTTCTGAAGATGTAAAGTCAACGTTCGACATTCTCAAGGCTCAGATTGAAGATCTGAGCAACAAGTTGAACCTCACCATGATAGTTGTGGGGAGCCATAACCCAACTGGGGTTGTGGGACACCTAAACAAGGTGAAAGTGCCCGAGCCGAAACCCTTCTGCGGGGTTCGAGATGCCAAGGACCTGGAAAATTTCATTTTCGACTTGGAACAATACTTTCGTGCCACAAACAATCGATTGATGAAGCCAAGATTACCTTGGCAACGATGCATCTAGCTGAAGATGCTAAACTATGGTGGAGATCTAGATTCATAGACATCGAACAAGGTCGATATTCTAGCGAGATGTGGGAAAAACTGAAACAAGAGCTGCGTTCTCAATTCTTCCCAGAAAATGTGGAGATATTGGCAAGATGCAAACTGCGTGAATTGAAGCACACTGGCAGCATCCGCGAATATGTTAAACAGTTCTCGGCATAAATGTTGGACATACGGGATATGTCTGAGAAGGACAAGGTATTTTGCTTCATCGAAGGCTTGAAGTCGTGGGCGAAATCGAAACTATACGAGCAGAGAGTGCAGGACCTCTCGACCGTTTACGCTGTGGCCGAGCGATTGTACGATTTAAGCGTTGATCAATCCCCAGACGCAAGAAAGAACCCTGGCCCCTCAAGTAACACAAATCCCAATACCCGCGCCAGTTCGCCTAAGAATGGTGGGGGAGATAAACAAGGTGGGGGAGAGCGAAAACCCTTCCAATCTAGGGGCGGGTACCAGGGACAGGGATTTTATCAGAATAATTACAACAATCGGTCCAACCCTTATTGCTATATTTGCAAAGGACCCCATCGGGCCTTTGAGTGCCCCAAACGAGTAGCCTTTCAAGCATTGTTTGACACTAATGCCGAGACAGAAACTTAGCTACCGAGGCGAGTACGCCGCAGACCGAGGGAGACAACAACCCTCGCATGGGAGCCTTAAAGTTCTTGTCAGCCCTCCAGAACAAGATGGGTCAACCAGGAGAGCCATTCGAGCGTGGTCTCATGTATGTTGACACATGGGTTAGCCAGAAGTCTGCCAAGAGTACCATGGTCGACTCTGGAGCCACCCATAACTTCATGGCCGAAGCGGAAGCATGTCAGTTGGACCTTCAATGGGACCGAGATTCGGGAAAGATGAAAGCGGTTAATTCGGCAGCGCTACCCATCCTAGGGGTAGCGAGACGAACAACACTAAAGCTGGGAGAATGGAAAAGACAGGCAAACTTTGTGATTGTCAAGATGGATGACTTTGATGTCGTGTTAGGGATGAAATTTCTTTTAGAACATAAAGTCATTCTGATGCCCTTCGCCAAATGCTTAGTTATCACAGGGTCTAGCATAGCTGTTGTTCAAGCTACAATAAATCAGTCGAATGGCCTAAGAATGATCTTGGCCCTCCAGCTAAAGGGAGGGTTGGCGCATGAAGAACCAACGGTATGGCTATCCCAATGATGGGAAAGGCGGACACGACCGAGATGGTCCCTGTGAAGATCCAGCGGGTTCTAGAAAAATACCGCGATGTTATGCTAGATGCTTTGCCGAAGGCTTTACCCCCACGAAGGGGGATCGACCATGAGATTGAATTACTACCCGGTATAAAACCCCTAGCCAAAAATGCGTATCATATGGCCCTTTCTGAGTTATCGAAGTTGAGAAACCAGCTCGATGAGCTCCTGTCTGTGGGTTCATTCGGCCTGCTAAGGTCCCCCCTTTGGGGCTCCGGTCCTCTTTCAAAAGAAAAAAGATGGCAGCTTACGCTTATGCATCGACTATCGAGCACTAAACAAGATCACTGCCCGCAACAAATACCCCTTGCCGATTATAACTGATTTATTTGACCGCCTCCATGGGGCTAAATACTTTTCAAAACTAGATTTGAGATCAGGATACTATCAAGTCCGCATCGCAGAAGGAGACAAATCTAAGACTACATGCGTTACCCGTTATGGGGAATTTGAATTCCTTGTGATGCCGTTTGGCCTCACTAAGTTGTAAGATACCCAAATGATGAAGAATAGCCTAGAAGGGGTATTTTTGGAAAAGCACTATGTAGGAGGTTAGTTTGTTAGAGAGAGTGCTACTGTGTGGGTATAAATAAGGTAGTGCAGGGAGCGTGAGAGGTAGGCTTTATTTTGGAAGAAGGTCTGAGGACTTCTTGGGAGAGATACCGGAGCTCTCGAACTCTCCGAGTAACGTCGTTTGGTTTATTTTCTATCCTTGTAATTCTGTTGATATTTCTATTAATGAAATATCTGTTGGTATTTGAAGTTAGATCCCTGTTTTGGTGTTATCTTTTCCATTTTATACTCTGTTTGGCATTTTATTGTGAATTGTTGAAGAAGTAAGGTATTGGTTACCTTACAAATTGGTATCAGAGCATTAAGATGCTGGGAAAGAAAATGTCTCCGTCTCAAATGGAAGAACGAATGGAGAAGCTCGAGCGACATACTGACGATCTACGCATCGGTGAACAGAATCCAGAGTACACTTGAAAATCTGGAAAGGATGATGTTGAATTATGTTGAACCACCAATCAATCCAAAAGCCTAAGCTGATGGATTGGAGTAAATTTAATTATACTAACCAACACTCCCCCTCACTTGTGGGCTTTGAAATTTGAGAAATGCCCTACAAGTGGACTTGAATTTTAATTGGGGATGAAATGACTTGACAGGGATTCGAACTCATGACCTCCTGCTCTGATACCATGTTGAATTATGTTAAACCACCAATTAATCCAAAAGCCTAA

mRNA sequence

ATGTCTGCAAACAAGCAACCTGGTAAGTCGCAAACCGACCGATTGGTCGAAATAGAAGAGCAACTGCTCTTCTTGAGAGAAGTTCCTGACAACATCCGGTTCTTGGAATCTCGAATGGAAGAGATCGAGACCAAGACCGGCCAAATTGACGCTGTAGTTGGCCGCGTGGACGGGTTGCCCGTCCAAGAGTTGATGCTGAGGGTTGAGTCCCTAGAAGAGAAAGCTGCACGACCCAATGTCCTGGAACGGGGGGACAATTCGTCGAGCTCTGTGGCCCATATGGAAGAGCGAATGAAAGCGGTTAATTCGGCAGCGCTACCCATCCTAGGGGTAGCGAGACGAACAACACTAAAGCTGGGAGAATGGAAAAGACAGGCAAACTTTGTGATTGGATTCGAACTCATGACCTCCTGCTCTGATACCATGTTGAATTATGTTAAACCACCAATTAATCCAAAAGCCTAA

Coding sequence (CDS)

ATGTCTGCAAACAAGCAACCTGGTAAGTCGCAAACCGACCGATTGGTCGAAATAGAAGAGCAACTGCTCTTCTTGAGAGAAGTTCCTGACAACATCCGGTTCTTGGAATCTCGAATGGAAGAGATCGAGACCAAGACCGGCCAAATTGACGCTGTAGTTGGCCGCGTGGACGGGTTGCCCGTCCAAGAGTTGATGCTGAGGGTTGAGTCCCTAGAAGAGAAAGCTGCACGACCCAATGTCCTGGAACGGGGGGACAATTCGTCGAGCTCTGTGGCCCATATGGAAGAGCGAATGAAAGCGGTTAATTCGGCAGCGCTACCCATCCTAGGGGTAGCGAGACGAACAACACTAAAGCTGGGAGAATGGAAAAGACAGGCAAACTTTGTGATTGGATTCGAACTCATGACCTCCTGCTCTGATACCATGTTGAATTATGTTAAACCACCAATTAATCCAAAAGCCTAA

Protein sequence

MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPILGVARRTTLKLGEWKRQANFVIGFELMTSCSDTMLNYVKPPINPKA

Homology

[Close]

BLAST of Sed0006649 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-26
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS  KQ GKS  DRLVEIEE+LLFLRE+PDN+R++ESR++EI TK   ID V  R+DGL 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPILGVARRTT 117
           ++ELMLRVE+LE+K  R + LERG++SSSS+AHMEER++ ++ +   I+ +    T
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELT 116

[Close]

BLAST of Sed0006649 vs. NCBI nr
Match: KAA0046219.1 (uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-23
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           +SAN   GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP
Sbjct: 2   LSANPS-GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 61

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 62  IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

[Close]

BLAST of Sed0006649 vs. NCBI nr
Match: TYK18977.1 (uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-22
Identity = 60/102 (58.82%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 8   GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLR 67
           GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ R
Sbjct: 8   GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 68  VESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           V++LE    R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 68  VDTLEGIVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

[Close]

BLAST of Sed0006649 vs. NCBI nr
Match: KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS++   GK+Q DRLVE+EEQ+L+L EVPD+IR+LESR+EEI  KT  IDAV GRV+G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFP 60

Query: 61  VQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QELM RV++LE      R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLL 111

[Close]

BLAST of Sed0006649 vs. NCBI nr
Match: KAA0045293.1 (uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS+    GK+Q DRL E+EEQ+L+L EVPD+IRFLESR+E+I  KT  IDAV GRV+GL 
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QEL+ RV++LEE   R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

[Close]

BLAST of Sed0006649 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.8e-27
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS  KQ GKS  DRLVEIEE+LLFLRE+PDN+R++ESR++EI TK   ID V  R+DGL 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPILGVARRTT 117
           ++ELMLRVE+LE+K  R + LERG++SSSS+AHMEER++ ++ +   I+ +    T
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDISKKTIVQMVSELT 116

[Close]

BLAST of Sed0006649 vs. ExPASy TrEMBL
Match: A0A5A7TY91 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00070 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           +SAN   GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP
Sbjct: 2   LSANPS-GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLP 61

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QEL+ RV++LE    R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 62  IQELLARVDTLEGIVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

[Close]

BLAST of Sed0006649 vs. ExPASy TrEMBL
Match: A0A5D3D5Z0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00720 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-23
Identity = 60/102 (58.82%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 8   GKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLPVQELMLR 67
           GK+Q DRLVE+EEQ+L+L +VPD+IRFLESR+EEI  KT  IDAV GRV+GLP+QEL+ R
Sbjct: 8   GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 68  VESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           V++LE    R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 68  VDTLEGIVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

[Close]

BLAST of Sed0006649 vs. ExPASy TrEMBL
Match: A0A5A7SW95 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001980 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS++   GK+Q DRLVE+EEQ+L+L EVPD+IR+LESR+EEI  KT  IDAV GRV+G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFP 60

Query: 61  VQELMLRVESLEE--KAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QELM RV++LE      R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLL 111

[Close]

BLAST of Sed0006649 vs. ExPASy TrEMBL
Match: A0A5A7TP22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00510 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MSANKQPGKSQTDRLVEIEEQLLFLREVPDNIRFLESRMEEIETKTGQIDAVVGRVDGLP 60
           MS+    GK+Q DRL E+EEQ+L+L EVPD+IRFLESR+E+I  KT  IDAV GRV+GL 
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  VQELMLRVESLEEKAARPNVLERGDNSSSSVAHMEERMKAVNSAALPIL 110
           +QEL+ RV++LEE   R    ERGD+S+ SVAH+EER++ ++S+   +L
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLL 109

The following BLAST results are available for this feature:

BLAST of Sed0006649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	2.0e-26	56.90	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0046219.1	4.7e-23	57.80	uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]	[more]
TYK18977.1	1.0e-22	58.82	uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa]	[more]
KAA0035532.1	1.4e-22	55.86	uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]	[more]
KAA0045293.1	1.4e-22	55.96	uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0006649 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	9.8e-27	56.90	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TY91	2.3e-23	57.80	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D5Z0	5.0e-23	58.82	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SW95	6.6e-23	55.86	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TP22	6.6e-23	55.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0006649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006649.1	Sed0006649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity