Sed0006636 (gene) Chayote v1

Overview


Name	Sed0006636
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Mitochondrial transcription termination factor family protein
Location	LG04: 46288651 .. 46289637 (+)
RNA-Seq Expression	Sed0006636
Synteny	Sed0006636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAGCGCCAGTAGAAATGGTACTAGTATGCTGTGGTTCTTTAGGGACAAAGGTTTTGATGACAAAATCATTGATAAGATGTTTAAGAAGTGTAGGCGATTAGAAGCTGTGAAGAACGAAAGAGCATCTGAAAATTGGGAATCTTTGGAAGGAATTGGGATTCAAAAGAGGAAGTTCCCATCTGTTGTTTCTAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTTGTCCCCATGGTTGAGTGCCTTAAGACACTCAGCACTAAGCCTCATGAAATTGCTTCAACCATTGCCAAATTTCCAGTCATTCTTTCCTGTAGCGTTGAAGAGAAGCTTTGTCTACTTTTGGCTTTCTTTCAAGCATTGGGTGTCTCTGAAAAACAGGTTGGAAAGATGATTTTACTCAACCCGAGACTTATTAGCTACAGCATTGAATTGAAGCTCGTTGAACCTGTTGATTTTCTTGCTGGGATTGGTCCAACCAAGGAGGGGGTGATTGGAAAAGTTCTTGCAAACAATCCATTTCTCATCGGTTATAGTGTTGATAAGAGGCTCCGTCCTACTTCGGAGTTTCTTAAGTCGATTGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCTGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTCGGTTTGAAGATGGAGAAATAGTGTCTTTGGTGTCTGGTTATCCCCCTATTTTGATCAAGAGTGTTCAACATTCTTTAGAACCCTGGATTAGATTTTTAGTCGAAACAATGGGAAGAAAACTTAACAAAGTTGTCGAATATCCCAATTTTTTTAAGCATGGTTTGAGGAAGAGACTCGAGTTGCGGCATAGATTGTTGAAAGAGAATAATGTGGATTTTACCTTGAATGAATTGCTGGAATGCAACCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

mRNA sequence

ATGGAAATTAGCGCCAGTAGAAATGGTACTAGTATGCTGTGGTTCTTTAGGGACAAAGGTTTTGATGACAAAATCATTGATAAGATGTTTAAGAAGTGTAGGCGATTAGAAGCTGTGAAGAACGAAAGAGCATCTGAAAATTGGGAATCTTTGGAAGGAATTGGGATTCAAAAGAGGAAGTTCCCATCTGTTGTTTCTAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTTGTCCCCATGGTTGAGTGCCTTAAGACACTCAGCACTAAGCCTCATGAAATTGCTTCAACCATTGCCAAATTTCCAGTCATTCTTTCCTGTAGCGTTGAAGAGAAGCTTTGTCTACTTTTGGCTTTCTTTCAAGCATTGGGTGTCTCTGAAAAACAGGTTGGAAAGATGATTTTACTCAACCCGAGACTTATTAGCTACAGCATTGAATTGAAGCTCGTTGAACCTGTTGATTTTCTTGCTGGGATTGGTCCAACCAAGGAGGGGGTGATTGGAAAAGTTCTTGCAAACAATCCATTTCTCATCGGTTATAGTGTTGATAAGAGGCTCCGTCCTACTTCGGAGTTTCTTAAGTCGATTGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCTGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTCGGTTTGAAGATGGAGAAATAGTGTCTTTGGTGTCTGGTTATCCCCCTATTTTGATCAAGAGTGTTCAACATTCTTTAGAACCCTGGATTAGATTTTTAGTCGAAACAATGGGAAGAAAACTTAACAAAGTTGTCGAATATCCCAATTTTTTTAAGCATGGTTTGAGGAAGAGACTCGAGTTGCGGCATAGATTGTTGAAAGAGAATAATGTGGATTTTACCTTGAATGAATTGCTGGAATGCAACCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

Coding sequence (CDS)

ATGGAAATTAGCGCCAGTAGAAATGGTACTAGTATGCTGTGGTTCTTTAGGGACAAAGGTTTTGATGACAAAATCATTGATAAGATGTTTAAGAAGTGTAGGCGATTAGAAGCTGTGAAGAACGAAAGAGCATCTGAAAATTGGGAATCTTTGGAAGGAATTGGGATTCAAAAGAGGAAGTTCCCATCTGTTGTTTCTAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTTGTCCCCATGGTTGAGTGCCTTAAGACACTCAGCACTAAGCCTCATGAAATTGCTTCAACCATTGCCAAATTTCCAGTCATTCTTTCCTGTAGCGTTGAAGAGAAGCTTTGTCTACTTTTGGCTTTCTTTCAAGCATTGGGTGTCTCTGAAAAACAGGTTGGAAAGATGATTTTACTCAACCCGAGACTTATTAGCTACAGCATTGAATTGAAGCTCGTTGAACCTGTTGATTTTCTTGCTGGGATTGGTCCAACCAAGGAGGGGGTGATTGGAAAAGTTCTTGCAAACAATCCATTTCTCATCGGTTATAGTGTTGATAAGAGGCTCCGTCCTACTTCGGAGTTTCTTAAGTCGATTGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCTGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTCGGTTTGAAGATGGAGAAATAGTGTCTTTGGTGTCTGGTTATCCCCCTATTTTGATCAAGAGTGTTCAACATTCTTTAGAACCCTGGATTAGATTTTTAGTCGAAACAATGGGAAGAAAACTTAACAAAGTTGTCGAATATCCCAATTTTTTTAAGCATGGTTTGAGGAAGAGACTCGAGTTGCGGCATAGATTGTTGAAAGAGAATAATGTGGATTTTACCTTGAATGAATTGCTGGAATGCAACCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

Protein sequence

MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENNVDFTLNELLECNQKKFMMKMGLL

Homology

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BLAST of Sed0006636 vs. NCBI nr
Match: XP_022135779.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 552.0 bits (1421), Expect = 3.5e-153
Identity = 278/328 (84.76%), Postives = 299/328 (91.16%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SASRNGT+MLWFFRDKGFDD+ IDKMFKKCRRLEAV  ERASENWE LE IGIQKRK
Sbjct: 6   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 65

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            P VVSKCPKILALGL EKLVPMVECL TLSTKPHEIAS IAKFP ILS SVEEKLC LL
Sbjct: 66  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 125

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KL+E VDFLAG+G TKEG++GKV+A NPFL
Sbjct: 126 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNPFL 185

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYS+DKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRC F+DG
Sbjct: 186 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 245

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           E+VSLV+GYPPILIKS++HSLEP IRFLVE MGRKL +V +YP+FFKHG +KRLELR +L
Sbjct: 246 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQKL 305

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           L E  VDFTL+ELLECNQKKFMMKMGLL
Sbjct: 306 LIEKKVDFTLSELLECNQKKFMMKMGLL 333

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BLAST of Sed0006636 vs. NCBI nr
Match: XP_038887558.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 548.1 bits (1411), Expect = 5.1e-152
Identity = 276/328 (84.15%), Postives = 298/328 (90.85%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME+SASRNG  MLWFFRDKGFDD+ IDKMFK+CRRL+ ++ ERASENWE LE IGIQ+RK
Sbjct: 1   MEVSASRNGNCMLWFFRDKGFDDRSIDKMFKRCRRLKDMQKERASENWEYLERIGIQRRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PS+VSKCPKILALGLQEKLVPMVECL TLSTKP+EIAS IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSIVSKCPKILALGLQEKLVPMVECLATLSTKPNEIASAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EK +GKMILLNPRLISYSIE KLVE VDF AG G  KEGVIGKVLA NPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFFAGFGLMKEGVIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPTSEFL+SIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRRC F+DG
Sbjct: 181 MGYSVDKRLRPTSEFLRSIGLNEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRCGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVSLV+GYPP+LIKS+QHSLEP IRFLVE MGRKL++V EYP+FFKHGL+KRLELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKRLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE  +DFTL+ELLECNQKKFMMKMGLL
Sbjct: 301 LKEKQMDFTLSELLECNQKKFMMKMGLL 328

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BLAST of Sed0006636 vs. NCBI nr
Match: XP_004144567.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus] >KGN43380.1 hypothetical protein Csa_020537 [Cucumis sativus])

HSP 1 Score: 546.6 bits (1407), Expect = 1.5e-151
Identity = 279/328 (85.06%), Postives = 297/328 (90.55%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SASRNG  MLWFFRDKGFDD+ IDKMF+KCRRLE ++NERASENWE LE IGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKILALGLQEKLVPMVECL TLSTKPHEIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KLVE VDFLAG+G TKEGVIGKVLA NPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR   F+DG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVSLV+GYPP+LIKS+QHSLEP IRFLVE MGRKL +V EYP+FFKHGL+K+LELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE NVDF L+ELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

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BLAST of Sed0006636 vs. NCBI nr
Match: XP_023554548.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 545.8 bits (1405), Expect = 2.5e-151
Identity = 277/328 (84.45%), Postives = 294/328 (89.63%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           MEIS SRNGTSMLWFFRDKGFDD  IDKMFKKCRRLE ++NERA+ENWE LEGIGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKIL LGLQEK+ PMVECL TLSTKP EIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KL+E VDFLAG+G TK+G+IGKVLA NPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKDGMIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           IGYSV KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR  F+DG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRSGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVSLV+GYPPILIKS+QHSLEP IRFLVE MGR L++V EYP FFKHGL+KRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE   DFTL+ELLECNQKKFMMKM LL
Sbjct: 301 LKEKTTDFTLSELLECNQKKFMMKMSLL 328

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BLAST of Sed0006636 vs. NCBI nr
Match: XP_008451174.1 (PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 545.0 bits (1403), Expect = 4.3e-151
Identity = 277/328 (84.45%), Postives = 297/328 (90.55%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SAS+NG  MLWFFRDKGFDD+ IDKMF+KCRRLE  +NERASENWE LE IGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKILALGLQEKLVPMVECL TLSTKPHEIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EK +GKMILLNPRLISYSIE KLVE VDFLAG+G TKEGVIGKVLA NPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR   F+DG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVS+V+GYPP+LIKS+QHSLEP IRFLVE MGRKL++V EYP+FFKHGL+K+LELRHRL
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE NVDFTL+ELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

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BLAST of Sed0006636 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.7e-110
Identity = 196/321 (61.06%), Postives = 252/321 (78.50%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGI-GIQKRKFPSVVS 67
           N +S++WFFRDKGFDD  IDKM +KC++LE  +++ ASENW+ L  I GIQ+RK P +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P E+AS I KFP ILS SVEEKLC LLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVD 187
           GV E Q+GKMIL NPRLISYSI+ KL   V FLA +G  ++G+IGKVL  NPFL+GYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ C F D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENN 307
           V+GYP ILIKSV++SL+P IRFLV+ MGR +++V  YP FF HGL+K++E R +L+K+NN
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLNELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Sed0006636 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.5e-26
Identity = 77/291 (26.46%), Postives = 143/291 (49.14%), Query Frame = 0


Query: 32  KCRRLEAVKNERASENWESLEGIGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLS 91
           +C  L +   E      +    +G+ +  F ++V   PKI+     + +   +  LK   
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 92  TKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELK 151
               E+   +A  P ++ CS+EE+   L+ +F  LG+ ++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 152 LVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVDKRLRPTSEFLKS-IGLKEMDLQAVA 211
           +   V FL  +G   E  IG +L   P L+  S+ K++RP   FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNE-AIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 212 LKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSLVSGYPPILIKSVQHSLEPWIRFLVE 271
              P +L   +   L PN+ Y         ++  +++ +P +L  +V  +L P  R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD-NLRPKYRYLRR 543

Query: 272 TMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENNVDFTLNELLECNQKKF 322
           TM R L  ++E+P FF + L +R+  RH ++ EN V+F L  +L C  ++F
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

[Close]

BLAST of Sed0006636 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-23
Identity = 78/280 (27.86%), Postives = 145/280 (51.79%), Query Frame = 0


Query: 54  IGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVE 113
           +G+   +  ++  K        L  K+ P+VE L  L     +I + + K P I   S+ 
Sbjct: 206 LGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLT 265

Query: 114 EKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKV 173
           + L   +AF + LG+ + Q  K+I   P +++YS + KL   V+FL+  G T+E  IG++
Sbjct: 266 DNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEFLSQTGLTEE-QIGRI 325

Query: 174 LANNPFLIGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLR 233
           L   P ++ YSV+ +LRPT E+ +S+    +D+  +  + P      ++  L+P   +  
Sbjct: 326 LTRCPNIMSYSVEDKLRPTMEYFRSL---NVDVAVLLHRCPQTFGLSIESNLKPVTEFFL 385

Query: 234 RCRFEDGEIVSLVSGYPPILIKSVQHSLEP-WIRFLVETMGRKLNKVVEYPNFFKHGLRK 293
              F   EI  ++S Y  +   S++ ++ P W  F  +TM    +++V++P FF + L++
Sbjct: 386 EKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF--QTMDYPKSELVKFPQFFGYSLQE 445

Query: 294 RLELRHRLLKENNVDFTLNELLECN-------QKKFMMKM 326
           R++ R+ L++ + V   LN++L  +        KK MMK+
Sbjct: 446 RIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKL 478

[Close]

BLAST of Sed0006636 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-21
Identity = 67/309 (21.68%), Postives = 147/309 (47.57%), Query Frame = 0


Query: 54  IGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVE 113
           +G+++   P ++ + P++L   +   L P+V+ L+ +  +PH++   + ++P +L   +E
Sbjct: 154 LGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELLGFKLE 213

Query: 114 EKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELKLVEP-VDFLAGIGPTKEGVIGK 173
             +   +A+   +GV+ +QVG +I   P ++   +  K+++P V+ L GIG  +   I +
Sbjct: 214 GTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVG-KIIKPFVEHLEGIG-LQRLAIAR 273

Query: 174 VLANNPFLIGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDIL--------------- 233
           ++   P+++G+ ++ +++P  E L   G+++  L  +  ++PDIL               
Sbjct: 274 IIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQQSLF 333

Query: 234 -------CRDVDKVLR--------------PNLVYLRRCRFEDGEIVSLVSGYPPILIKS 293
                    D  +V+                ++ +L  C F   ++  +V   P +L  +
Sbjct: 334 ESSILVSSEDFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQLLALN 393

Query: 294 VQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENNVDFTLNELLEC 326
           +   ++    +    M R L ++VE+P FF +GL   +  RH ++ +     +L  LL C
Sbjct: 394 MD-IMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAWLLNC 453

[Close]

BLAST of Sed0006636 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 66/309 (21.36%), Postives = 147/309 (47.57%), Query Frame = 0


Query: 54  IGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVE 113
           +G+++   P ++ + P++L   +   L P+V+ L+ +  +P ++   + ++P +L   +E
Sbjct: 145 LGVRRDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPTDVPRVLERYPELLGFKLE 204

Query: 114 EKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELKLVEP-VDFLAGIGPTKEGVIGK 173
             +   +A+   +GV  +QVG +I   P ++   +  K+++P V+ L GIG  +   I +
Sbjct: 205 GTMSTSVAYLVGIGVGRRQVGSVITRFPEVLGMRVG-KIIKPFVEHLEGIG-LQRLAIAR 264

Query: 174 VLANNPFLIGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDIL--------------- 233
           ++   P+++G+ + ++++P  E L  IG+++  L ++ +++PD+L               
Sbjct: 265 IIEKKPYVLGFGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQQSLF 324

Query: 234 -------CRDVDKVLR--------------PNLVYLRRCRFEDGEIVSLVSGYPPILIKS 293
                    D  +VL                ++ +L  C F   ++  +V   P +L  +
Sbjct: 325 ESSILVSREDFGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQLLALN 384

Query: 294 VQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENNVDFTLNELLEC 326
           +   +     +    M R L ++VE+P FF +G+   +  RH ++    +  +L  LL C
Sbjct: 385 ID-IMRMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPRHEMVSRKGLTCSLAWLLNC 444

[Close]

BLAST of Sed0006636 vs. ExPASy TrEMBL
Match: A0A6J1C2G0 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007658 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.7e-153
Identity = 278/328 (84.76%), Postives = 299/328 (91.16%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SASRNGT+MLWFFRDKGFDD+ IDKMFKKCRRLEAV  ERASENWE LE IGIQKRK
Sbjct: 6   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 65

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            P VVSKCPKILALGL EKLVPMVECL TLSTKPHEIAS IAKFP ILS SVEEKLC LL
Sbjct: 66  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 125

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KL+E VDFLAG+G TKEG++GKV+A NPFL
Sbjct: 126 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNPFL 185

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYS+DKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRC F+DG
Sbjct: 186 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 245

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           E+VSLV+GYPPILIKS++HSLEP IRFLVE MGRKL +V +YP+FFKHG +KRLELR +L
Sbjct: 246 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQKL 305

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           L E  VDFTL+ELLECNQKKFMMKMGLL
Sbjct: 306 LIEKKVDFTLSELLECNQKKFMMKMGLL 333

[Close]

BLAST of Sed0006636 vs. ExPASy TrEMBL
Match: A0A0A0K108 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 7.2e-152
Identity = 279/328 (85.06%), Postives = 297/328 (90.55%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SASRNG  MLWFFRDKGFDD+ IDKMF+KCRRLE ++NERASENWE LE IGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKILALGLQEKLVPMVECL TLSTKPHEIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KLVE VDFLAG+G TKEGVIGKVLA NPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR   F+DG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVSLV+GYPP+LIKS+QHSLEP IRFLVE MGRKL +V EYP+FFKHGL+K+LELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE NVDF L+ELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Sed0006636 vs. ExPASy TrEMBL
Match: A0A5A7UUK2 (Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00330 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 2.1e-151
Identity = 277/328 (84.45%), Postives = 297/328 (90.55%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SAS+NG  MLWFFRDKGFDD+ IDKMF+KCRRLE  +NERASENWE LE IGIQKRK
Sbjct: 8   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 67

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKILALGLQEKLVPMVECL TLSTKPHEIA+ IAKFP ILS SVEEKLC LL
Sbjct: 68  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 127

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EK +GKMILLNPRLISYSIE KLVE VDFLAG+G TKEGVIGKVLA NPFL
Sbjct: 128 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 187

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR   F+DG
Sbjct: 188 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 247

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVS+V+GYPP+LIKS+QHSLEP IRFLVE MGRKL++V EYP+FFKHGL+K+LELRHRL
Sbjct: 248 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 307

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE NVDFTL+ELLECNQKKFMMKMGLL
Sbjct: 308 LKEKNVDFTLSELLECNQKKFMMKMGLL 335

[Close]

BLAST of Sed0006636 vs. ExPASy TrEMBL
Match: A0A1S3BQA2 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492550 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 2.1e-151
Identity = 277/328 (84.45%), Postives = 297/328 (90.55%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           ME SAS+NG  MLWFFRDKGFDD+ IDKMF+KCRRLE  +NERASENWE LE IGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKILALGLQEKLVPMVECL TLSTKPHEIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EK +GKMILLNPRLISYSIE KLVE VDFLAG+G TKEGVIGKVLA NPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           +GYSVDKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR   F+DG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVS+V+GYPP+LIKS+QHSLEP IRFLVE MGRKL++V EYP+FFKHGL+K+LELRHRL
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE NVDFTL+ELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Sed0006636 vs. ExPASy TrEMBL
Match: A0A6J1I081 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468249 PE=3 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.6e-151
Identity = 276/328 (84.15%), Postives = 294/328 (89.63%), Query Frame = 0


Query: 1   MEISASRNGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGIGIQKRK 60
           MEIS SRNGTSMLWFFRDKGFDD  IDKMFKKCRRLE ++NERA+ENWE LEGIGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  FPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLL 120
            PSVVSKCPKIL LGLQEK+ PMVECL TL+TKP EIA+ IAKFP ILS SVEEKLC LL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFL 180
           AFFQALGV EKQ+GKMILLNPRLISYSIE KL+E VDFLAG+G TKEG+IGKVL  NPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 IGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDG 240
           IGYSV KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR  F+DG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRL 300
           EIVSLV+GYPPILIKS+QHSLEP IRFLVE MGR L++V EYP FFKHGL+KRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENNVDFTLNELLECNQKKFMMKMGLL 329
           LKE  +DFTL+ELLECNQKKFMMKM LL
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKMSLL 328

[Close]

BLAST of Sed0006636 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 400.6 bits (1028), Expect = 1.2e-111
Identity = 196/321 (61.06%), Postives = 252/321 (78.50%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGI-GIQKRKFPSVVS 67
           N +S++WFFRDKGFDD  IDKM +KC++LE  +++ ASENW+ L  I GIQ+RK P +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P E+AS I KFP ILS SVEEKLC LLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVD 187
           GV E Q+GKMIL NPRLISYSI+ KL   V FLA +G  ++G+IGKVL  NPFL+GYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ C F D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENN 307
           V+GYP ILIKSV++SL+P IRFLV+ MGR +++V  YP FF HGL+K++E R +L+K+NN
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLNELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Sed0006636 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 400.6 bits (1028), Expect = 1.2e-111
Identity = 196/321 (61.06%), Postives = 252/321 (78.50%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGI-GIQKRKFPSVVS 67
           N +S++WFFRDKGFDD  IDKM +KC++LE  +++ ASENW+ L  I GIQ+RK P +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P E+AS I KFP ILS SVEEKLC LLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVD 187
           GV E Q+GKMIL NPRLISYSI+ KL   V FLA +G  ++G+IGKVL  NPFL+GYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ C F D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENN 307
           V+GYP ILIKSV++SL+P IRFLV+ MGR +++V  YP FF HGL+K++E R +L+K+NN
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLNELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Sed0006636 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 400.6 bits (1028), Expect = 1.2e-111
Identity = 196/321 (61.06%), Postives = 252/321 (78.50%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDKIIDKMFKKCRRLEAVKNERASENWESLEGI-GIQKRKFPSVVS 67
           N +S++WFFRDKGFDD  IDKM +KC++LE  +++ ASENW+ L  I GIQ+RK P +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P E+AS I KFP ILS SVEEKLC LLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVD 187
           GV E Q+GKMIL NPRLISYSI+ KL   V FLA +G  ++G+IGKVL  NPFL+GYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ C F D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENN 307
           V+GYP ILIKSV++SL+P IRFLV+ MGR +++V  YP FF HGL+K++E R +L+K+NN
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLNELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Sed0006636 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.6e-32
Identity = 81/272 (29.78%), Postives = 145/272 (53.31%), Query Frame = 0


Query: 50  SLEGIGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLSTKPHEIASTIAKFPVILS 109
           ++E + +  +    ++ K P IL+  +QE    +     + S    +I   I ++P++L 
Sbjct: 306 AMEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLG 365

Query: 110 CSVEEKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELKLVEPVDFLAGIGPTKEGV 169
           CS    + +++  F  LGV +K++GK+I   P+L+    + + ++ V FL  +G  KE +
Sbjct: 366 CSA-SNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQ-EFLKVVCFLEDLGFQKE-I 425

Query: 170 IGKVLANNPFLIGYSVDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNL 229
           +G++L   P + G S++K L+    FL   G+       +  K+P+ L  D DK + P L
Sbjct: 426 VGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRL 485

Query: 230 VYLRRCRFEDGEIVSLVSGYPPILIKSVQHSLEPWIRFLVETMGRKLNKVVEYPNFFKHG 289
            YL      + EI  ++  + PIL  S+   L P   FLV +M + + +V+EYP +F + 
Sbjct: 486 KYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYS 545

Query: 290 LRKRLELRHRLLKENNVDFTLNELLECNQKKF 322
           L KR++ R R+LK  N++ TL E+L  N ++F
Sbjct: 546 LEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

[Close]

BLAST of Sed0006636 vs. TAIR 10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-27
Identity = 77/291 (26.46%), Postives = 143/291 (49.14%), Query Frame = 0


Query: 32  KCRRLEAVKNERASENWESLEGIGIQKRKFPSVVSKCPKILALGLQEKLVPMVECLKTLS 91
           +C  L +   E      +    +G+ +  F ++V   PKI+     + +   +  LK   
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 92  TKPHEIASTIAKFPVILSCSVEEKLCLLLAFFQALGVSEKQVGKMILLNPRLISYSIELK 151
               E+   +A  P ++ CS+EE+   L+ +F  LG+ ++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 152 LVEPVDFLAGIGPTKEGVIGKVLANNPFLIGYSVDKRLRPTSEFLKS-IGLKEMDLQAVA 211
           +   V FL  +G   E  IG +L   P L+  S+ K++RP   FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNE-AIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 212 LKFPDILCRDVDKVLRPNLVYLRRCRFEDGEIVSLVSGYPPILIKSVQHSLEPWIRFLVE 271
              P +L   +   L PN+ Y         ++  +++ +P +L  +V  +L P  R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD-NLRPKYRYLRR 543

Query: 272 TMGRKLNKVVEYPNFFKHGLRKRLELRHRLLKENNVDFTLNELLECNQKKF 322
           TM R L  ++E+P FF + L +R+  RH ++ EN V+F L  +L C  ++F
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

The following BLAST results are available for this feature:

BLAST of Sed0006636 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135779.1	3.5e-153	84.76	transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica ...	[more]
XP_038887558.1	5.1e-152	84.15	transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa ...	[more]
XP_004144567.1	1.5e-151	85.06	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sa...	[more]
XP_023554548.1	2.5e-151	84.45	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita ...	[more]
XP_008451174.1	4.3e-151	84.45	PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial ...	[more]

BLAST of Sed0006636 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	1.7e-110	61.06	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4IHL3	4.5e-26	26.46	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4JVI3	2.7e-23	27.86	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	1.1e-21	21.68	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
B6TGN4	1.5e-21	21.36	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]

BLAST of Sed0006636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2G0	1.7e-153	84.76	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordic...	[more]
A0A0A0K108	7.2e-152	85.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1	[more]
A0A5A7UUK2	2.1e-151	84.45	Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BQA2	2.1e-151	84.45	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis ...	[more]
A0A6J1I081	4.6e-151	84.15	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]

BLAST of Sed0006636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	1.2e-111	61.06	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	1.2e-111	61.06	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	1.2e-111	61.06	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	5.6e-32	29.78	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	3.2e-27	26.46	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 134..165 e-value: 1.3 score: 18.0 coord: 98..129 e-value: 0.0036 score: 26.6 coord: 27..57 e-value: 2600.0 score: 0.6 coord: 207..238 e-value: 2.1 score: 17.3 coord: 276..307 e-value: 77.0 score: 12.2 coord: 171..202 e-value: 7.3E-5 score: 32.2 coord: 62..93 e-value: 1.6 score: 17.8 coord: 243..275 e-value: 6.7 score: 15.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 8..168 e-value: 8.4E-21 score: 74.2 coord: 153..321 e-value: 2.8E-31 score: 108.6
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..327
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 92..326 e-value: 3.3E-49 score: 169.4
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 11..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006636.1	Sed0006636.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding