Sed0006635 (gene) Chayote v1

Overview


Name	Sed0006635
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CACTA en-spm transposon protein
Location	LG07: 15827533 .. 15828262 (+)
RNA-Seq Expression	Sed0006635
Synteny	Sed0006635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAACCACTGGGAATTGCTTGACTGGTTGGAAAAGAGTAGGAAAGCGAAAGAGAGTCGAGTAGGGCTTAAATACCACGACCGAGTAGGCAGTAGGTCCTTCTTGAACATTCAAGAAATGGTCAGTAATGTTCTTGTCCATTCCAATCATTGTATATTCCATGATTTTAATGCATATTTTTTTAACTCTAGAAAAAGAAAGAAATAGGAATTCAACTAGATGATGTGGAACTGTGGAAAGAAGTTCGCTACCATCCAGTGAAGGGATAGTTGGGTCCTAAATACTTCACATGAGTATTATTTCGAATAAGCCAATGTTGTTTGTTTTCATACTTTGTTAGAGATTAATAAATGTATTTATGTATTTGTAGGGTGAAATGATAGCCCTTCAAAAATCACCAATTGTTGAAGGGTCCCAACCCTTAACTAAGGCTAAAATTTGTGTGAAGGTGTTAGGGCGTCTTTCTGATAGGATTAATGGTATGAGTTATCTACCAAAGACAAAGCGCTCAAAAAGTGCCTCCTCTTCATCTGGTAGTAAGGGAAATCGTGATCGTGACTTCGATGATACTGTGGTGGCACTAAAAGAAGATTTTGAACAACAAATAGTTGCATTAAAAAAAGCACAAGAGGAGAAAGATAAACAAACAATGGAGAAGATGGACTCTATGCAAACCATGATGGCGGGGATGTACAAGAAGTTCAATCAAGGCCACCCATCGAGCTAA

mRNA sequence

ATGTGCAACCACTGGGAATTGCTTGACTGGTTGGAAAAGAGTAGGAAAGCGAAAGAGAGTCGAGTAGGGCTTAAATACCACGACCGAGTAGGCAGTAGGTCCTTCTTGAACATTCAAGAAATGGGTGAAATGATAGCCCTTCAAAAATCACCAATTGTTGAAGGGTCCCAACCCTTAACTAAGGCTAAAATTTGTGTGAAGGTGTTAGGGCGTCTTTCTGATAGGATTAATGGTATGAGTTATCTACCAAAGACAAAGCGCTCAAAAAGTGCCTCCTCTTCATCTGGTAGTAAGGGAAATCGTGATCGTGACTTCGATGATACTGTGGTGGCACTAAAAGAAGATTTTGAACAACAAATAGTTGCATTAAAAAAAGCACAAGAGGAGAAAGATAAACAAACAATGGAGAAGATGGACTCTATGCAAACCATGATGGCGGGGATGTACAAGAAGTTCAATCAAGGCCACCCATCGAGCTAA

Coding sequence (CDS)

ATGTGCAACCACTGGGAATTGCTTGACTGGTTGGAAAAGAGTAGGAAAGCGAAAGAGAGTCGAGTAGGGCTTAAATACCACGACCGAGTAGGCAGTAGGTCCTTCTTGAACATTCAAGAAATGGGTGAAATGATAGCCCTTCAAAAATCACCAATTGTTGAAGGGTCCCAACCCTTAACTAAGGCTAAAATTTGTGTGAAGGTGTTAGGGCGTCTTTCTGATAGGATTAATGGTATGAGTTATCTACCAAAGACAAAGCGCTCAAAAAGTGCCTCCTCTTCATCTGGTAGTAAGGGAAATCGTGATCGTGACTTCGATGATACTGTGGTGGCACTAAAAGAAGATTTTGAACAACAAATAGTTGCATTAAAAAAAGCACAAGAGGAGAAAGATAAACAAACAATGGAGAAGATGGACTCTATGCAAACCATGATGGCGGGGATGTACAAGAAGTTCAATCAAGGCCACCCATCGAGCTAA

Protein sequence

MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQEMGEMIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGSKGNRDRDFDDTVVALKEDFEQQIVALKKAQEEKDKQTMEKMDSMQTMMAGMYKKFNQGHPSS

Homology

[Close]

BLAST of Sed0006635 vs. NCBI nr
Match: XP_034677791.1 (uncharacterized protein LOC117908288 [Vitis riparia])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFL-NIQEMGEMIALQKSPIVEGSQPL 60
           +C+ +    +  +S    E+R+ L +  R GSRSF+ +++E+ +M+ LQK P++EG Q L
Sbjct: 355 LCDRFASEKFQRRSTLNTENRMKLPFTHRGGSRSFVQHVEELEKMLELQKQPVLEGGQAL 414

Query: 61  TKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGSKGNRDRDFDDTVVALKEDFEQQ 120
            +A+ICV+VLG  S  I G+ + P   R  S+SS S  K +R+ + ++ + A +E  + Q
Sbjct: 415 KEAEICVQVLGSRSGYIKGLGHGP---RPPSSSSKSTHKSHREIELENELKATRELLQSQ 474

Query: 121 IVALKKAQEE 130
              ++  Q +
Sbjct: 475 ETRIQHQQSQ 481

[Close]

BLAST of Sed0006635 vs. NCBI nr
Match: TYK22243.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-07
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 1    MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ--------EMGEMIALQKSPI 60
            +CNH+    + E+SR  K +R    Y+   GS+SFL  Q        E+ +++ LQ  P 
Sbjct: 903  LCNHYISHAFQEQSRTNKAARQKQSYNHSSGSKSFLQRQYELVERQGELNQILELQFQPT 962

Query: 61   VEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGS 98
             +GSQPL + +IC +VLGR S  + G+ + PK K  ++ S+SS S
Sbjct: 963  PKGSQPLFEDEICDQVLGRRSGYLRGLGWGPKPKARRTTSASSSS 1007

[Close]

BLAST of Sed0006635 vs. NCBI nr
Match: KAA0045540.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-06
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ-EMGE---------------- 60
           +CNH+    + E+SR  K +R    Y+   GS+SFL  Q E+ E                
Sbjct: 177 LCNHYISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFRETH 236

Query: 61  --MIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSS 96
             M+ LQ  P  EGSQPL++ +IC +VLGR  D   G+ + PK K  ++ S+SS
Sbjct: 237 NQMLELQSQPTPEGSQPLSEDEICDQVLGRRRDYSKGLGWGPKPKARRTTSASS 290

[Close]

BLAST of Sed0006635 vs. NCBI nr
Match: KAA0046652.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-05
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ-EMGE---------------- 60
           +C+H+    + E+SR  K +R    Y+   GS+SFL  Q E+ E                
Sbjct: 145 LCDHYISRAFQEQSRINKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFRETH 204

Query: 61  --MIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGS 98
             M+ LQ  P  EGSQPL++ +IC +VLGR      G+ + PK K  ++AS+SS S
Sbjct: 205 NQMLELQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKDRRTASASSSS 260

[Close]

BLAST of Sed0006635 vs. NCBI nr
Match: KAA0051394.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 49/167 (29.34%), Postives = 83/167 (49.70%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ--------EMGEMIALQKSPI 60
           +C+H+    + E+SR  K +R    Y+   GS+SFL  Q        E+ +++ LQ  P 
Sbjct: 68  LCDHYISRAFQEQSRTNKAARQKQSYNHSSGSKSFLQRQYELAERQGELNQILELQSQPT 127

Query: 61  VEGSQPLTKAKICVKVLGRLSDRINGMSY--LPKTKRSKSASSSSGSKGNRDRDFDDTVV 120
            +GSQPL + +IC +VLGR S    G+ +   PK +R+ SASSSS S     +   +   
Sbjct: 128 PKGSQPLFEDEICDQVLGRRSGYSRGLGWGPKPKARRTTSASSSSTSCSQSTQKEIELQA 187

Query: 121 ALKEDFEQQIVALKKAQEEKDKQTMEKMDSMQTMMAGMYKKFNQGHP 158
            L E  E+      + Q+   +    +++ +Q ++   + +  QG P
Sbjct: 188 KLNEALER-----IEVQDRNHQALASQVEQIQKLIK-EFTRAQQGPP 228

[Close]

BLAST of Sed0006635 vs. ExPASy TrEMBL
Match: A0A5D3DFC9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001400 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 1    MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ--------EMGEMIALQKSPI 60
            +CNH+    + E+SR  K +R    Y+   GS+SFL  Q        E+ +++ LQ  P 
Sbjct: 903  LCNHYISHAFQEQSRTNKAARQKQSYNHSSGSKSFLQRQYELVERQGELNQILELQFQPT 962

Query: 61   VEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGS 98
             +GSQPL + +IC +VLGR S  + G+ + PK K  ++ S+SS S
Sbjct: 963  PKGSQPLFEDEICDQVLGRRSGYLRGLGWGPKPKARRTTSASSSS 1007

[Close]

BLAST of Sed0006635 vs. ExPASy TrEMBL
Match: A0A5A7TQV6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00340 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ-EMGE---------------- 60
           +CNH+    + E+SR  K +R    Y+   GS+SFL  Q E+ E                
Sbjct: 177 LCNHYISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFRETH 236

Query: 61  --MIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSS 96
             M+ LQ  P  EGSQPL++ +IC +VLGR  D   G+ + PK K  ++ S+SS
Sbjct: 237 NQMLELQSQPTPEGSQPLSEDEICDQVLGRRRDYSKGLGWGPKPKARRTTSASS 290

[Close]

BLAST of Sed0006635 vs. ExPASy TrEMBL
Match: A0A5A7TT95 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00150 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ-EMGE---------------- 60
           +C+H+    + E+SR  K +R    Y+   GS+SFL  Q E+ E                
Sbjct: 145 LCDHYISRAFQEQSRINKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFRETH 204

Query: 61  --MIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTKRSKSASSSSGS 98
             M+ LQ  P  EGSQPL++ +IC +VLGR      G+ + PK K  ++AS+SS S
Sbjct: 205 NQMLELQSQPTPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKDRRTASASSSS 260

[Close]

BLAST of Sed0006635 vs. ExPASy TrEMBL
Match: A0A5A7U7V3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001340 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.3e-05
Identity = 49/167 (29.34%), Postives = 83/167 (49.70%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ--------EMGEMIALQKSPI 60
           +C+H+    + E+SR  K +R    Y+   GS+SFL  Q        E+ +++ LQ  P 
Sbjct: 68  LCDHYISRAFQEQSRTNKAARQKQSYNHSSGSKSFLQRQYELAERQGELNQILELQSQPT 127

Query: 61  VEGSQPLTKAKICVKVLGRLSDRINGMSY--LPKTKRSKSASSSSGSKGNRDRDFDDTVV 120
            +GSQPL + +IC +VLGR S    G+ +   PK +R+ SASSSS S     +   +   
Sbjct: 128 PKGSQPLFEDEICDQVLGRRSGYSRGLGWGPKPKARRTTSASSSSTSCSQSTQKEIELQA 187

Query: 121 ALKEDFEQQIVALKKAQEEKDKQTMEKMDSMQTMMAGMYKKFNQGHP 158
            L E  E+      + Q+   +    +++ +Q ++   + +  QG P
Sbjct: 188 KLNEALER-----IEVQDRNHQALASQVEQIQKLIK-EFTRAQQGPP 228

[Close]

BLAST of Sed0006635 vs. ExPASy TrEMBL
Match: A0A5A7ULK1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00290 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 42/131 (32.06%), Postives = 61/131 (46.56%), Query Frame = 0


Query: 1   MCNHWELLDWLEKSRKAKESRVGLKYHDRVGSRSFLNIQ-EMGE---------------- 60
           +C+H+    + E+SR  K +R    Y+   GS+SFL  Q E+ E                
Sbjct: 153 LCDHYISRAFQEQSRTNKAARQKEPYNHSSGSKSFLQRQYELAERRGQPVDRVELFRETH 212

Query: 61  -----------------MIALQKSPIVEGSQPLTKAKICVKVLGRLSDRINGMSYLPKTK 98
                            M+ LQ  P  EGSQPL++ +IC +VLGR  D   G+ + PK K
Sbjct: 213 VRAGTFVSQAAEDAHNQMLELQSQPTPEGSQPLSEDEICDQVLGRRPDYSKGLGWGPKPK 272

The following BLAST results are available for this feature:

BLAST of Sed0006635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034677791.1	2.0e-08	33.08	uncharacterized protein LOC117908288 [Vitis riparia]	[more]
TYK22243.1	4.8e-07	37.14	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0045540.1	7.0e-06	35.96	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046652.1	5.9e-05	35.34	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0051394.1	1.7e-04	29.34	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0006635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFC9	2.3e-07	37.14	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TQV6	3.4e-06	35.96	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TT95	2.9e-05	35.34	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7U7V3	8.3e-05	29.34	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULK1	1.4e-04	32.06	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Sed0006635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006635.1	Sed0006635.1	mRNA