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Sed0006600 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGTTGACTAATGCTTGTTCGTCCATGAAAAATGCGAAAAGATTCCGAATCCATAGCTATATTGAATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGTGCGCTTTACTTATAATTTAGTTCTTAACTTTCTTGATCTGTCATGACCTAGATCGATTGAGTAAAGGATTGTTATAAATTTGTCCGGTTAGGATTTTAGATCCCTTTGATAAATTGCTGGAATTTGATTTTTTCTATTTGCATTAGTTATGGCTATTCGGATCACTTTACGCTCGGAAACTGTAGTAAATTAATTTTGACTCAATAATATTCGGATGTCAAGGAAACCGTGTTCAACATGGATTTAACTTATCATCTTTTAGTTATTTAAGATCCTATTGACCACTTGTTCACTCCGTGATTTTTTGGTTTGATGGTTATTTGCATTTGTTCTTAATTGGATGATTTTCAGGTTAATAATTAGTCTCAAGAATCAAGAAAGAGAGTTTTAGTTTGAGTGTGGTAGTGATCAATTATGTTTAGAAGAAAGTGATACGCATATAAAGTTTATCGTTTGCATTAGCTCCCATTAGCCACATTAACCTGATATTGCTGGAGGACGAAAAGGTCTATGCTACTATTCTTTGATTGAAGTAGCCAATGTCTATGAATCTTTAGGAGCTACAACATTAAAATATTGTAACTTTTGTAGTGTTACGATAGGATTGTAACGTCTCAATGGCGTAGTTTTTTGTAATGTTTTCGATAGGATTGTAACTTTTCATGCATCAATGAAGGTTTTCGTTTCCTATAAAAAAAACAACATTAAAATATTTATTTAGGGGTAATGTTAGTACTGATATAGATTATCATGCCAAGTAAGTTGTAATTATCCGTAAGAATTTCCTGTGTACATGAAGTTGGATGTGCTAACTTTATTATTTTTTATTTTTTATTTTTATGATATCTCTTCATGAGCTATATTTCTTACTAATGACTATTTATGTTTTTTCTCTTCATATAAAACTTGCAAATGTAAAGATTCCTGATCCAACTTCGTAATTTTCTTGATTTTATATTTTGAAAGGAAAAGTGGATCTACTTCTAGGTTGTCTAACTAGTGGATTTCTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCTTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTTGTATAGGACTGATAAAATTGAACAAAATTATATAATAACATGCATGCACAACAACCTGATTATTTTTCCCCTTGAAGACAGTTTATTACATCAAGTAGCTAATCTTCAAATTAGGACGCAAACAAGCTTAACATTCATTCTCTCTTTCCTTCACCTCCCATGACCAAGTCGGTCCTTTTGCAGAACTCGGGTCTTACTCTTACATACCTTCTCTTTGTTGCTTTTTTATTCTTAATAGATCGAGTCTACTATGAGAAAGCCTTCCGGCTTTATTCAAATTGTTAATTAAAAGAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGAGGATCAAGAAGCAGGAAGGAATAATTTGAGTTGCTTTTTGAGTTTCACCTATTAAGTCCTAGGCAATCCGTAATCCTCTTGCCCCGCCCCCAGACCAAAAAAAAAACTTCTAGGCGATTTCTTTATCAAGTATTTGGTACTGTCGATTTGTTATTTTCCCCATTCCACTACTTCATAAAGATGGGGTTGCAAATTTAGCAATATATTATTCTGACCATCAAGTACCATGCGAAAGAGTCTGAAGTAGGCTAAATCATGAATCAGTTGTTTAATTAAAATAGGGTTATCTTATTTATCAGTCTTGAGATCTTGAAGTCAAGAAATAGTTGTTATTGACCGATCACCAAACATAAGGAGTTAGTTCAGTTTTAGATAAACTCGCCTATTTTTCCTTTTTCAATCTAATTCAAGGATGATGTATTAAAAACGAATATCTTGTTTGATTTTTTTTAAAAAAAAATTAAACTTGTCTTTCTCATTTTTTTCGACATCTGAATTCTTAGCCAAATTCCTAAAACAAAAACTACTTGAAAACTACTTTTCAGTTTTCCAAACATTACAGACTTGATTTTTTAATACATAGGTGAAAGTTCAAGGAAAAAAAAACCTCTTTTACTTTCTCTCTCTAGTAAACTGTCTTGAAGGAAAAAGCCCTAGGAAACTCTCGAGACTCTCTCTCCTCCTTCTCTAGAGCCAACAATGTGCAACATTTTTCCTCCATTTTGACGCCTTCTTGTCAGGCGTCGATGTGTTTCCTCCACTCTTCTTTTTCACTTAAATATTTCTCGTTTTTTCCTAATGCAACATCTAACGTTGATATCCTCTCAGTCATTTCTCACTTTTTTGGCACCAACAAACATCTTCCTCCACAAACCTGACTACAATCTTTTCCTTCTCTATTTTTTGATCTATGTCATTAACGATGTACCTCCTTATCATGTGCTTCACTACCGATATTCCATGTATCTGTCAATCGTCAGGCATCGTCACCTTTTCTCCTCCAGTGTCTTTCAAAACCAATCGTTGGTGAG CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGCAAAGACAAGACTAGATGAGGATCAAGAAGCAGGAAGGAATAATTTGAGTTGCTTTTTGAGTTTCACCTATTAAGTCCTAGGCAATCCGTAATCCTCTTGCCCCGCCCCCAGACCAAAAAAAAAACTTCTAGGCGATTTCTTTATCAAGTATTTGGTACTGTCGATTTGTTATTTTCCCCATTCCACTACTTCATAAAGATGGGGTTGCAAATTTAGCAATATATTATTCTGACCATCAAGTACCATGCGAAAGAGTCTGAAGTAGGCTAAATCATGAATCAGTTGTTTAATTAAAATAGGGTTATCTTATTTATCAGTCTTGAGATCTTGAAGTCAAGAAATAGTTGTTATTGACCGATCACCAAACATAAGGAGTTAGTTCAGTTTTAGATAAACTCGCCTATTTTTCCTTTTTCAATCTAATTCAAGGATGATGTATTAAAAACGAATATCTTGTTTGATTTTTTTTAAAAAAAAATTAAACTTGTCTTTCTCATTTTTTTCGACATCTGAATTCTTAGCCAAATTCCTAAAACAAAAACTACTTGAAAACTACTTTTCAGTTTTCCAAACATTACAGACTTGATTTTTTAATACATAGGTGAAAGTTCAAGGAAAAAAAAACCTCTTTTACTTTCTCTCTCTAGTAAACTGTCTTGAAGGAAAAAGCCCTAGGAAACTCTCGAGACTCTCTCTCCTCCTTCTCTAGAGCCAACAATGTGCAACATTTTTCCTCCATTTTGACGCCTTCTTGTCAGGCGTCGATGTGTTTCCTCCACTCTTCTTTTTCACTTAAATATTTCTCGTTTTTTCCTAATGCAACATCTAACGTTGATATCCTCTCAGTCATTTCTCACTTTTTTGGCACCAACAAACATCTTCCTCCACAAACCTGACTACAATCTTTTCCTTCTCTATTTTTTGATCTATGTCATTAACGATGTACCTCCTTATCATGTGCTTCACTACCGATATTCCATGTATCTGTCAATCGTCAGGCATCGTCACCTTTTCTCCTCCAGTGTCTTTCAAAACCAATCGTTGGTGAG ATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGCAAAGACAAGACTAGATGA MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLESMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR Homology
BLAST of Sed0006600 vs. NCBI nr
Match: XP_023512420.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37 Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of Sed0006600 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37 Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of Sed0006600 vs. NCBI nr
Match: XP_022986407.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36 Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Sed0006600 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36 Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0
BLAST of Sed0006600 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36 Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1J7G1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.5e-37 Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36 Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1FS03 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36 Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36 Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1CGX5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36 Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14 Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0
BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14 Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0
BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14 Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0
BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0
BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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