Sed0006598 (gene) Chayote v1

Overview
NameSed0006598
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGeneral transcription and DNA repair factor IIH helicase subunit XPD
LocationLG09: 35622443 .. 35631774 (+)
RNA-Seq ExpressionSed0006598
SyntenySed0006598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAATAGACTGAGCGAGTGTGAAGTTGGGGCAAAGGGCCATTTTCGTTAGAAAACAAGTCACCCTTCAGCCAGACCTCTGAAATCGCCGTCGCCGCCATCACCGGCGAAACAACCACCATGAAGTTCGAATTAGAAGACGTAACAGTCTGCTTCCCCTACGACCACATCTACCCGGAGCAATACGCGTACATGCTCGAGCTCAAGCGAGCACTCGACGCCAAGGGCCACTGCCTTCTCGAGATGCCGACCGGCACCGGAAAAACCATCGCCCTCCTCTCCCTCATCACCAGCTACGCCCTATCCAAGCCCCAGAACCCCGTCAAGCTCATCTACTGTACTCGCACCGTTCACGAAATGGAGAAGACCTTGGCCGAGCTGAGATTGTTACATGACTACCAGGTTCGGTTGCTCGGCTCTCGCGCTCAGATCTTGGCGGTCGGGCTGTCCTCGCGGAAGAATCTGTGTGTGAATTCGAAGGTTTTGGCGTCGGAGAATCGGGATTCGGTCGATGCGGGGTGCCGGAAGCTTACCGCGAGTTGGGTTAGGGCTTTGGCGGCGGAGAATTCGAATGTGGCGAGTTGTGAGTTCTTTGAGCAGTATGAGAAGGCGGGTTCTAATGCTGTGTTGCCGCCCGGGGTTTATACGTTGCAGGTATTGGTTTGATTGTTATTTGGATTTTCATGAATTTGGTGCGACCTAAGGTTTAATTCTTTTTTCCCCTAATCAACGAGGGTGGTTTGTCCCTATGGGTGACCGGTGGTGAAAGATTTGAGCTTTCAAGGTATACTCTTATCTAGGTTTGGGATGGACATCTCATATTAATTTGTAGACATCTTTGGTGTTTTCGTTTCTTCCATGTATTCGGGCCTAGGAACAGAGGTAACCTAGGAACGGGTGTGGTTACGTGCGAATAGTGGAGCTAAGCTGCAATTTCCGGGTTTCCAAAAGATAATCACCAATGGTGGTCTAAATTGTGTAGCAGATGCTAAGGAACTAAAAGTACGTATACCGTTGTTATTTTTTGCTTCTGAATGATTTGGATTAGCATTTCTTTGGTCCTTACTCAGAGAAGTTTCCTCATGAAAATCAAAATTCCAGTCTCTTCTTTGGGAGTGCAGTTGGGGATGCAGTTAGTGAAACAGTATTGAGATTCTGAAAGCTATCAATTCATTAGGCATTTAATTTAACGAGACTTGCTAGATTAAGTTTTGAGTATCACTTTCGGCTTTGTCCGCAAGGGGCAGCCTCGTTGGTTGAAACTTTGGCCTTTCAAGGCATGCTTATTTGGAGGTCTGAGGTTCGAGCTCCCCGAGTGAGTTTAATTATAAAATCCTTTGTCATCTCTCAGTTCTGGCCTTAGGGCAGGTGCAGGTGGCCTTAGATATTGGAAAGCGAAGCTCTAATTTCTCGGTTTCAAAATAAGAAAAATATCACTTTTGGCTTTACTTATGATATTATAGTATGAAGACAGTTTTTTTCTGAAGCCAGTTATTATACGGAAGTATATTTGCCAAGATTTTTCTATTCATTCATTTTTATAGATGGATATCATTTGTATCTTGAATAGGCTATTCATGTAATTTCCTCACTCGTTTTGTAGGATCTAAGAGCTTTTGGGACAAAGAAGGGTTGGTGTCCTTACTTCTTGGCCCGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGTGAATCTGTTGTGGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCTCTAAGTGTAAGTGTGAGGAGGCAAACAATTGAAGGTGCTAGAAGAAATCTCAATAAAATGCGCCAGGATATTGAGAGGTATAATCAGATCATAAGTTTCTTCCTTTATTTGATATCATATCTAGAAATAGTGTGTAACATGGCAGTTGCATCATCGGTGATAGTTTGAAGGCCATGGTTCATTTGTTTTCAATGTTCTTCAAAGTTAGTGTACTGATGTCTCTTATTGGAAGATTTATCTAGGTCTCTTAATTCCTTTATATGACTTTGTATCTCATTTAGAGGATCGTGTATATAAATAATTTGGTTTATTATGTGCATTGTGTAGGTATTTATGTGTTACTGTTACTCTTGAATTGCTATTTAATTAGTATTTTCCCTGATATGGTAGGAAGGTTCAAGGAAACCGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTTGTAGAGGGTTTGGCTCAAAGAGGAAACCTACCTAGTATGTTGTAAATTGTTGTAGTTGAAACAAGATTGCATGATTGTTTTTCTTCATGTTAAATATATCTTCACTTTCTTTTATTTTGTGATGCAGTCTCGGACACGTGGCTCTCAAACCCTGCCCTTCCAGATGATATTTTGAAGGAGGCTGTGCCAGGAAATATACGCCGAGCTGAACACTTCATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGCACGTTTGGACACTGAAAATGTTGTAAAGGAAGGGCTTGTTAATTTTGTTGGGAATATTGGTTCACAGGCTGGAATTGACCAAAAAACCCTGAAGTTTTGTTATGATCGTCTCCACTCTCTCATGATGACACTTGAAATTACTGACACAGATGAGTTCTTGCATATACAGACCATATGCGACTTTGCAACACTCGTTGGGACCTACGCACGAGGTTTTTCGATTATAATTGAGCCTGTTGATGAAAGAATGCCACATATTCCTGACCCTGTACTGCAGGTTAGTTAATATCTTCTTTAATTCTCCTATATGAATGTATGTATGCTTCTTGAAAGCCTTTTAGATGTATGGTAGATTTAGATGATCTTGAGTTTTGATGATAGAGAGGGATTTGAGTTGGCTTCCTCTACAACTACCTAGATGGTTTTTGTATTTAGAAATGGTTTTGATCTTGAAGTGTGGAGGCTTCACAGATAAGGAGAATCCACACATAGCTTTCAGTTCCTTTTCTCTGTTCCGGATGCCATCTCTTCTTCTCCTATTTCTGTATGGAGGCTTTCCCGAAGTTCTTATCAGAAAAAGAAAATCCTAAAAGTGTTAATTTGTCTTCGGTCTCTGGTTGGTAACAGCTCGTGCATGATGCTGTCAATGAAATTTTGATATGAACTATCTGTTATGTTTTCAAAAATTTCTATCCATGTTAAATTTTTTTTTTTACTGAAGTCATTTAATTTTTTCCTCAGCTTAGCTGTCATGATGCCTCGCTTGCTATTAAACCGGTGTTCGAACGATTTCAATCAGTTGTGATTACATCTGGAACTCTGAGTCCAATTGATCTCTACCCTCGATTGCTCAATTTTAATCCTGTTGTTAGCAGAAGTTTTACAATGTCTTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGGTGTGTGGTTCGGTTAAAATATATTACGTTTTTTCTTCTTTTCTTGGCAGTAAAGCTGGATTTCCTGTACTCAAACATGGTTTGTTATGTCACTAGTGATCAGCTTCCAGTGAGTACTAAATTTGATATGAGAAGCGATCTCGGTGTTGTAAGGAATTACGGAAGGCTCTTGCTTGAGATGGTCTCAGCAGTTCCTGATGGGGTAGTATGCTTCTTTGTCAGTTACTCATATATGGATGGGATTGTTAACAGTTGGAATGAAACTGGAATATTAAAGGTGACGTTTGGCTTGGTTATGGCTTTTTAGTGCAAAGTAGTCTTGATATGTTCTACCCTGATCATACTAAACTGTTGAACATATTTCTTCAGGAAATAATGCAGCATAAACTTGTATTCATTGAGACTCAAGATGTGGTGGAGACTACACTGGCTCTTGATAATTACCGTAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGTATCCTATTCCTCTGCCAATGCTTTCCTTTCACACTTGTTTTTTTTTTCCCCGCAGGTCTCGCGTGCCTTAGCGTGCTCCTTGCTGTGATTAATTATTAAAAAAATGTCTTTACTAAGCCTAAACACAAAAGTCCTTGTGTTTAAGATTTTTTTGTTCTTTACTAACTAATATAAGTTGCATTTACTAACCATTACTATTGGAGTATTTTTTTTAGAAGTAACATTTACTAACCCTTAGAGTATTTTTTAATATTCGCATTTCATCTGAGCCATCTCTTCTTTATGAATGTTTTTATATATAGTGCACCTCAACAAAAAAAGCTTGTGCTTTTTTTGCGCCTTAGGTTTATCGTACATTAGTGCATCAACTTTTAAAAACACTGCTCTTAGAGTTGTGACATGGCTTTCAATGTTTGGAGTTCGTTCTTTTTAGAGTTTGATTTCCCTTTTTTTTGATAACTCGGGAACTTAGAACTTCGCTCCTCAAAATTTGGGGGCTGCAGCACAATTCGGTTGTGTCTACAAATTCATGTCACTAGTGGATCTCAAATCTGAGAATTCAAGAGAAGCATACCCTCAAAGCCCAAACCTTTGACCAACCGCGCTGCTGCTACCCTTTAGGAACTAGAGTTTAGTATCCTTTGCTAGATAGAAGGTTGTAATGAGATGAACAAAGGCTTGAGGAAAGTTTTGTAGCAGGTTGGGACGTGTGCTATTTTGTGGACACTTTGGAGAGAGAGAAATAATAGAATCTTTCAGAGGCTTGAGGAGGTCTCCTTGAGATGTTTGGTTCCTTATTAGATTCTGTGTTTTTTTAAACTTTGGAGGGGAAGCATTTTTGTAATTCCTTTATCCTTTTAATTACTGGGGATCGCTTATTTGATCTTTAGTAATACATATATGCTATATTGTAATTTCATGAATCAATGAAATGTTTCTTATCCAAAAAAATAGGAAGTGGGAGAGTCCAACATCAATATAAAAGAGATATGGGTTACTCGGGGTCATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAATATGGTATCAGAGTCCATAAAGCCCAAACAAGTATCGGACCAATAAAAATGAAATTGAGATCCGATTTAAGATGGTGAGCTCAAAAGAGGCACCATCTTGAAGGGGCATGTTAGGATTTCACAAATGTCCCACATTGGAAAGTGGCAGAGTCTAACATCAATATAAAAGAGATATGAGTTACTCTCCTCATTGCCAATTGGTTCTCTTCTCCTTTTGTAGCTTTCTTTTTGTACGTCTTTGTTTTTTTTGTTTGGTTTCTAATAAAAAAATGATCTATTTTTCTTTCAGATAACTTCATAGAGACGAAGATAAAAAAAGAATGATGCAATGTAATTGAAATTTAATTTATGTTTGTGCAGGGGAAAAGTAGCTGAAGGTATAGATTTTGATCGTCATTATGGACGATTGGTGATAATGTTTGGTGTTCCATTTCAGTACACATTAAGCAAGTAAGTTTTATCTTATGACTTTTTAATGGCATAACACGTAGGTCAGAAAGGTGATTCTTCAATATAACTGCAATTTTCTATCTATACATTTGGAGTTATTATTGTATGCCCTTGTTTCTATGTTCAAGGACACATAATTTAGTGCGCTTTTGAATTGATTTTCAATTGAAAGTTGGGTGTTTACCCTTGTTTCAAAAAAATAAAAAAAATTGAAAGTTAAGTGCGTTCTTTAATATTTTGGCCGATGGACGTTGGTAAATCTCTGTGGATAAGAAACTTTCATTAATGTCTGAAATTACAATAAGTGCACTGAAGGGTTAAAAAGAGATCTCCAACTGTGTAGAAGTGTGTCATAGCTAACAGAAACAGAATCTTGTTCACACAAGAATGATAGAATCTACCAACTTTATAATAAAATCTCCAGAGAAAATCTCTCATAGAGCCAAAAGGTTACAACTCAAAATTGATAACTGATCGATGCCTTAACAACGACTCATAACTCCAATTTATAGGAAACCTAGAAATATCCTAATTAAGGTAAAAGACTCTTATTCCATAAAGGATTCTTTCCATAAATGATAATTCCATTTATGGAAAGTACAAATAAAAGCTAATTAAATACTAAATAATAATAAAATACTAATTGAAGTCTTCTATCACTTCCGGCTCTGTCTTGAATATGCAATTAGAGGTCTCGGAATCGTATCAAAGAATTGATATTTTCCTTAGATTATGGCTCATTTCCAAGATCAACACTCCTGAATCGCTGTTGGAGTGACGACAAGAAGGACGAGGAAGTTGGGAAGTATTAGAACTTTCAATTTTTATTATCATATACTAGTAATGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAACTATCTTGGGGTCGTTCTGCAAAGAATTGCTATTTTCCTTTTGGGCAGGCAGGTGGGCCCATTTTCTTTAAATTTGGTTGTTTCTGACAGATATTGATTTTGATTTTGTTTTCAGAATTTTGCTTGCTCGTTTAGAATATCTACGAGAGACGTTTCAAATTAAGGAAGGAGATTTTTTAACCTTTGATGCTTTGGTAGGGTCAACTTACTCTTACTCCATATATTGAAACTCCTTTTGGTGTATTATTGCTTAGCTTCTGACAATGTGAACAGAGACAAGCGGCACAATGTGTTGGACGAGTTATCCGATCGAAGGCTGACTATGGGATGATGATATTTGCTGATAAAAGGTTTGATCTTTTCTTTATTCATCAAAGTATGCAGTTTCAGCTAATTCCTCTATCAGAATCTTGTTTTCAATTATAGCTGCAACTTCAAGAAGTTCACAAATTGCCAATTCATTGAACGGGAATTATCTTTTATGAAATATATGAGTTCATTCATACTGATTCAATTTCACAGTACCTTTTCAGCTCTAGAAGTTGAAAGCCACATTAGGCAGAGGCACATTAAATTTGTCATCTGAATGATGTTGGTACTTAAATAAATTAGAGTTATCTACAAGTTAAAACAATATTTTTATAAAAATAAGTCTCCAAAGGGGCAGCCTCGTTGGTGGAGACTTGGGGCTTCCAAGGTGTGCTCTTGGAGGTTTTAGGTTCGAGATCGACCAGTTGAGTTTAATTGTAAAATTTTTTGTTTTCTCTCGGGTCCAGACTTTGGAACGGGCACAGGTGCCGTGGATATAGAGAAGCAAAACTTCGATTCCCAGTAATCATTTTTTTAAAATAAAAATAATAAATACACAAAATACTGAAGAAATAAGCATCAATATTTGAGGATTACTTTTCCTTTTGGAGTAGAAACAATTTAATTGATGATATGAAATTACAAGAGAAGGGTAAAACCCAAGGAGGGAGGTGTTTACCAAAGCCCTCTCCAATTAGATAGGAGGGTGTTATAACTTAAATGTTTAAATGTAGATGGCTGCTTACACCAAGTTATAGCCAAAACAAAATTTTTATCAAATTATATGATGATTCCTTATCTTGGAATGTTCTACTGTTGCGCTCCAGTCAAATAATCCAGAAGAATGCCCGAACTAATAGTTCTCATAGAGGATTACATTTTAGTGCCCTAACATAAATTAAGTCTGTAACTAAAGGAAAAGAATTTAAAACATAAGTTATATAAATCATAAGTCATACTAAAAGCATTGAGAAAAACTGAGGTAAGGAATTAAGCCAGTTATTATATTAAAGCATACAACTAACCACCATGGGTAGCCCAAGTGGTAAAAAATGTCTTAAGAAATCAAAAGGTTGTAGGTTCAATCTCTGGTAACCATCTATCTAAGAATTAATTTCCTACGAGTTTTTTTGACATCAAAATATTATAGGGTAAGACGGTACCTCTTGTGAGAATAGTCAAGGTGTGTGCAAGTTGGCTCGGACACTCATAGATATCGATAAAATAAAATAAAGCAACTGCATTTATATAGGCTGACCAACTAGTAAACACCCGTACTTGATCCCCAAAGGAGACTAATACATGTTTCATATCTACCTTAGTACTCGCAATTTTATAGTGCAAAATATAATAAAAGACATAGTAAATATGATTGTTTTTCGTTGATCTGTTTTGTAAACTTTGTGCAGGTATAGCCGTCATGACAAACGCTCAAAATTGCCGGGATGGATATTGTCACATTTACGCGATGCACATTTGAACTTGAGCACGGACATGGCTCTGCACATAGCTAGGGAGGTTTGTACTTGTTACCGTTCTAAGTTCTAAATATTGACATTTTTTTTATATACATCTATGATGGCCGCCTATCTAAAAAATATATTCTGAATTTTTTTTATATCTAAATGTTGTAGGATCAAGCAGTCATAAAAATAGTTAAGGTGAATGTAAGCTGACTAAAACACTCGCATATATAAAAAATAAGAAGAATATTTGGCATTCAAATCGATTCCTTTTTCTTGTAACTGGCTGTTCCATCATCCCTTTGGGTGTGTTTTGGCCCCTGTTTATGCAAACGACGAGTTGGTTATAATAATCTAACCCATGTTTGCCCCACCGTTTATTATAGTCGGTGGTTACCTAAACCTGCGTGCCCGTTTATCTAAATTTACGTGCCCGTTTATCTAAACCTTATATATATTATTTTTGTTACAATAAACAGTCCTTCAATCACCATTTATCATAACCCTTGTTGTAATAAGTAATAACTTGCCTCTCAAACACCGTTTATAATAATCTACCGCTTATCATAATCTACCGCTTATCATAATCCACCATTTATCATAGCCTTCCGTCTATCATAACCAAATCGGTGTCTCAAATACACCTTTTGAGTTTGAAGCGAAGTAGTTCCATCATCCAGTAGAATGCATCTTTTATAGCCAAACTGTTTGGCTAGTTAACTTCAAAATTATGAAGAATGTCTACTTATTGTCACCACCCTTATAAAATACAATAGAAGTTACTCCTTTTTTTGCATCTGAAAAAGTAATTGAATTCAAACTCTAAATCTGTGGATGCAGTTTCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGAAGCAGTGGTAAAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAAGCAACATGAATGATATGTTATATTAAGGATTTCAATACCTGGAAGTGGACACTGCTGTTTTACATTCTTCTTGAGACCTACCTACCGAGACCGTGTGAGTCCTCGTCTCATTAGTTAGAACTCGGATTTGCATGCTGCCTGGCTGTTGAATTGAATAGGGATGAGAAACTTCTGAAAGGATTGTTATTGTTCCAATAAGTAAATTTTGACAAATAGCTTTATAGTATGTGTATATAAAATATCCCTTGTGTTCCCTTTTGACTGATAATATTGCTCATTTTTTC

mRNA sequence

GTGAAATAGACTGAGCGAGTGTGAAGTTGGGGCAAAGGGCCATTTTCGTTAGAAAACAAGTCACCCTTCAGCCAGACCTCTGAAATCGCCGTCGCCGCCATCACCGGCGAAACAACCACCATGAAGTTCGAATTAGAAGACGTAACAGTCTGCTTCCCCTACGACCACATCTACCCGGAGCAATACGCGTACATGCTCGAGCTCAAGCGAGCACTCGACGCCAAGGGCCACTGCCTTCTCGAGATGCCGACCGGCACCGGAAAAACCATCGCCCTCCTCTCCCTCATCACCAGCTACGCCCTATCCAAGCCCCAGAACCCCGTCAAGCTCATCTACTGTACTCGCACCGTTCACGAAATGGAGAAGACCTTGGCCGAGCTGAGATTGTTACATGACTACCAGGTTCGGTTGCTCGGCTCTCGCGCTCAGATCTTGGCGGTCGGGCTGTCCTCGCGGAAGAATCTGTGTGTGAATTCGAAGGTTTTGGCGTCGGAGAATCGGGATTCGGTCGATGCGGGGTGCCGGAAGCTTACCGCGAGTTGGGTTAGGGCTTTGGCGGCGGAGAATTCGAATGTGGCGAGTTGTGAGTTCTTTGAGCAGTATGAGAAGGCGGGTTCTAATGCTGTGTTGCCGCCCGGGGTTTATACGTTGCAGGATCTAAGAGCTTTTGGGACAAAGAAGGGTTGGTGTCCTTACTTCTTGGCCCGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGTGAATCTGTTGTGGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCTCTAAGTGTAAGTGTGAGGAGGCAAACAATTGAAGGTGCTAGAAGAAATCTCAATAAAATGCGCCAGGATATTGAGAGGTTCAAGGAAACCGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTTGTAGAGGGTTTGGCTCAAAGAGGAAACCTACCTATCTCGGACACGTGGCTCTCAAACCCTGCCCTTCCAGATGATATTTTGAAGGAGGCTGTGCCAGGAAATATACGCCGAGCTGAACACTTCATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGCACGTTTGGACACTGAAAATGTTGTAAAGGAAGGGCTTGTTAATTTTGTTGGGAATATTGGTTCACAGGCTGGAATTGACCAAAAAACCCTGAAGTTTTGTTATGATCGTCTCCACTCTCTCATGATGACACTTGAAATTACTGACACAGATGAGTTCTTGCATATACAGACCATATGCGACTTTGCAACACTCGTTGGGACCTACGCACGAGGTTTTTCGATTATAATTGAGCCTGTTGATGAAAGAATGCCACATATTCCTGACCCTGTACTGCAGCTTAGCTGTCATGATGCCTCGCTTGCTATTAAACCGGTGTTCGAACGATTTCAATCAGTTGTGATTACATCTGGAACTCTGAGTCCAATTGATCTCTACCCTCGATTGCTCAATTTTAATCCTGTTGTTAGCAGAAGTTTTACAATGTCTTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGTGATCAGCTTCCAGTGAGTACTAAATTTGATATGAGAAGCGATCTCGGTGTTGTAAGGAATTACGGAAGGCTCTTGCTTGAGATGGTCTCAGCAGTTCCTGATGGGGTAGTATGCTTCTTTGTCAGTTACTCATATATGGATGGGATTGTTAACAGTTGGAATGAAACTGGAATATTAAAGGAAATAATGCAGCATAAACTTGTATTCATTGAGACTCAAGATGTGGTGGAGACTACACTGGCTCTTGATAATTACCGTAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGGGAAAAGTAGCTGAAGGTATAGATTTTGATCGTCATTATGGACGATTGGTGATAATGTTTGGTGTTCCATTTCAGTACACATTAAGCAAAATTTTGCTTGCTCGTTTAGAATATCTACGAGAGACGTTTCAAATTAAGGAAGGAGATTTTTTAACCTTTGATGCTTTGAGACAAGCGGCACAATGTGTTGGACGAGTTATCCGATCGAAGGCTGACTATGGGATGATGATATTTGCTGATAAAAGGTATAGCCGTCATGACAAACGCTCAAAATTGCCGGGATGGATATTGTCACATTTACGCGATGCACATTTGAACTTGAGCACGGACATGGCTCTGCACATAGCTAGGGAGTTTCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGAAGCAGTGGTAAAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAAGCAACATGAATGATATGTTATATTAAGGATTTCAATACCTGGAAGTGGACACTGCTGTTTTACATTCTTCTTGAGACCTACCTACCGAGACCGTGTGAGTCCTCGTCTCATTAGTTAGAACTCGGATTTGCATGCTGCCTGGCTGTTGAATTGAATAGGGATGAGAAACTTCTGAAAGGATTGTTATTGTTCCAATAAGTAAATTTTGACAAATAGCTTTATAGTATGTGTATATAAAATATCCCTTGTGTTCCCTTTTGACTGATAATATTGCTCATTTTTTC

Coding sequence (CDS)

ATGAAGTTCGAATTAGAAGACGTAACAGTCTGCTTCCCCTACGACCACATCTACCCGGAGCAATACGCGTACATGCTCGAGCTCAAGCGAGCACTCGACGCCAAGGGCCACTGCCTTCTCGAGATGCCGACCGGCACCGGAAAAACCATCGCCCTCCTCTCCCTCATCACCAGCTACGCCCTATCCAAGCCCCAGAACCCCGTCAAGCTCATCTACTGTACTCGCACCGTTCACGAAATGGAGAAGACCTTGGCCGAGCTGAGATTGTTACATGACTACCAGGTTCGGTTGCTCGGCTCTCGCGCTCAGATCTTGGCGGTCGGGCTGTCCTCGCGGAAGAATCTGTGTGTGAATTCGAAGGTTTTGGCGTCGGAGAATCGGGATTCGGTCGATGCGGGGTGCCGGAAGCTTACCGCGAGTTGGGTTAGGGCTTTGGCGGCGGAGAATTCGAATGTGGCGAGTTGTGAGTTCTTTGAGCAGTATGAGAAGGCGGGTTCTAATGCTGTGTTGCCGCCCGGGGTTTATACGTTGCAGGATCTAAGAGCTTTTGGGACAAAGAAGGGTTGGTGTCCTTACTTCTTGGCCCGGCATATGGTACAGTTTGCAAATGTGGTAGTATATAGTTATCAATACTTGCTTGATCCCAAAGTGGCTAGCATTATATCCAAGGAAATGCAGCGTGAATCTGTTGTGGTGTTTGATGAGGCACACAATATTGATAACGTGTGTATTGAAGCTCTAAGTGTAAGTGTGAGGAGGCAAACAATTGAAGGTGCTAGAAGAAATCTCAATAAAATGCGCCAGGATATTGAGAGGTTCAAGGAAACCGATGCAGGTAGACTGCGTGCAGAATATAACAGGCTTGTAGAGGGTTTGGCTCAAAGAGGAAACCTACCTATCTCGGACACGTGGCTCTCAAACCCTGCCCTTCCAGATGATATTTTGAAGGAGGCTGTGCCAGGAAATATACGCCGAGCTGAACACTTCATACATGTATTGCGGAGATTGGTTCAGTATCTTGAAGCACGTTTGGACACTGAAAATGTTGTAAAGGAAGGGCTTGTTAATTTTGTTGGGAATATTGGTTCACAGGCTGGAATTGACCAAAAAACCCTGAAGTTTTGTTATGATCGTCTCCACTCTCTCATGATGACACTTGAAATTACTGACACAGATGAGTTCTTGCATATACAGACCATATGCGACTTTGCAACACTCGTTGGGACCTACGCACGAGGTTTTTCGATTATAATTGAGCCTGTTGATGAAAGAATGCCACATATTCCTGACCCTGTACTGCAGCTTAGCTGTCATGATGCCTCGCTTGCTATTAAACCGGTGTTCGAACGATTTCAATCAGTTGTGATTACATCTGGAACTCTGAGTCCAATTGATCTCTACCCTCGATTGCTCAATTTTAATCCTGTTGTTAGCAGAAGTTTTACAATGTCTTTGACCAGAGACTGCATATGCCCAATGGTTCTCACTCGTGGCAGTGATCAGCTTCCAGTGAGTACTAAATTTGATATGAGAAGCGATCTCGGTGTTGTAAGGAATTACGGAAGGCTCTTGCTTGAGATGGTCTCAGCAGTTCCTGATGGGGTAGTATGCTTCTTTGTCAGTTACTCATATATGGATGGGATTGTTAACAGTTGGAATGAAACTGGAATATTAAAGGAAATAATGCAGCATAAACTTGTATTCATTGAGACTCAAGATGTGGTGGAGACTACACTGGCTCTTGATAATTACCGTAAGGCTTGTGATTGTGGGAGAGGTGCTGTGTTTTTTTCCGTAGCCAGGGGAAAAGTAGCTGAAGGTATAGATTTTGATCGTCATTATGGACGATTGGTGATAATGTTTGGTGTTCCATTTCAGTACACATTAAGCAAAATTTTGCTTGCTCGTTTAGAATATCTACGAGAGACGTTTCAAATTAAGGAAGGAGATTTTTTAACCTTTGATGCTTTGAGACAAGCGGCACAATGTGTTGGACGAGTTATCCGATCGAAGGCTGACTATGGGATGATGATATTTGCTGATAAAAGGTATAGCCGTCATGACAAACGCTCAAAATTGCCGGGATGGATATTGTCACATTTACGCGATGCACATTTGAACTTGAGCACGGACATGGCTCTGCACATAGCTAGGGAGTTTCTTAGGAAGATGGCACAACCCTATGATAAGGCAGGAAGCAGTGGTAAAAAGACCTTATTGTCCCAAGAAGACTTAGAAAAGATGTCTGAAAGCAACATGAATGATATGTTATATTAA

Protein sequence

MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYALSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSKVLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGNIGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPVDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFVSYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY
Homology
[Close]
BLAST of Sed0006598 vs. NCBI nr
Match: XP_022150277.1 (DNA repair helicase XPD [Momordica charantia])

HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 730/758 (96.31%), Postives = 746/758 (98.42%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV  LG RAQILAVGLSSRKNLCVN +
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVHQLGPRAQILAVGLSSRKNLCVNPR 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSTAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +DTWLSNPALPDDILKEAVPGNIRRAEHF+HVLRRLVQYLE RLDTENV KEGLVNFVG+
Sbjct: 301 TDTWLSNPALPDDILKEAVPGNIRRAEHFVHVLRRLVQYLEGRLDTENVEKEGLVNFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +GSQAGIDQKTLKFCYDRLHSL++TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 VGSQAGIDQKTLKFCYDRLHSLLLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEGNMNEMLY 758

[Close]
BLAST of Sed0006598 vs. NCBI nr
Match: XP_038898338.1 (general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 [Benincasa hispida])

HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 734/758 (96.83%), Postives = 748/758 (98.68%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYD IYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDQIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+I+RFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIDRFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSGKKTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. NCBI nr
Match: XP_008451374.1 (PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo])

HSP 1 Score: 1470.3 bits (3805), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDT+NV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGS+G+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. NCBI nr
Match: XP_011659313.1 (general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sativus] >KGN44823.1 hypothetical protein Csa_016833 [Cucumis sativus])

HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN  
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRA+AAEN +V +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. NCBI nr
Match: XP_022953477.1 (DNA repair helicase XPD [Cucurbita moschata])

HSP 1 Score: 1465.7 bits (3793), Expect = 0.0e+00
Identity = 731/758 (96.44%), Postives = 746/758 (98.42%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN  
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match: Q8W4M7 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidopsis thaliana OX=3702 GN=XPD PE=1 SV=1)

HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLA+ENRDSVDA CRK TASWVRAL+ EN NV  C+FFE YEKA  NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDTENV KE  V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match: A6QLJ0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taurus OX=9913 GN=ERCC2 PE=2 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 2.6e-250
Identity = 419/746 (56.17%), Postives = 558/746 (74.80%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
            + P    KLIYC+RTV E+EK + ELR L  +  +  G +   L + LSSRKNLC++ +
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA    +S++  C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL  +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +D  L+NP LPD++LKEAVPG+IR AEHF+  LRRL++Y++ RL  ++VV+E    F+  
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI+D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL DA+LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745

[Close]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match: P18074 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sapiens OX=9606 GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 3.7e-249
Identity = 417/746 (55.90%), Postives = 558/746 (74.80%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + V FPYD+IYPEQ++YM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
            + P    KLIYC+RTV E+EK + ELR L ++  +  G +   L + LSSRKNLC++ +
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA    ++++  C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL  +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL  ++VV+E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEITD  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL DA+LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745

[Close]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match: Q60452 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetulus griseus OX=10029 GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 861.3 bits (2224), Expect = 8.2e-249
Identity = 415/746 (55.63%), Postives = 559/746 (74.93%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
            + P    KLIYC+RTV E+EK + ELR L  +  +  G +   L + LSSRKNLC++ +
Sbjct: 61  RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA   +++++  C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL+ +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL  ++VV+E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +P+L  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL D++LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745

[Close]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match: O08811 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musculus OX=10090 GN=Ercc2 PE=1 SV=2)

HSP 1 Score: 860.5 bits (2222), Expect = 1.4e-248
Identity = 416/746 (55.76%), Postives = 559/746 (74.93%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MK  ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y 
Sbjct: 1   MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
            + P    KLIYC+RTV E+EK + ELR L  +  +  G +   L + LSSRKNLC++ +
Sbjct: 61  RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           V        VD  C  LTAS+VRA   +++++  C F+E+++  G    LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           +A G ++GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCI+++SV++ R+T++  + NL+ +++ + R KETD  RLR EY RLVEGL +      
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +D  L+NP LPD++L+EAVPG+IR AEHF+  LRRL++Y++ RL  ++VV+E    F+  
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +  +  I +K L+FC +RL SL+ TLEI D  +F  +  + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            D+R P I +PVL  SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV   +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF 
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SY YM+  V SW E GIL+ I ++KL+FIETQD  ET++AL+ Y++AC+ GRGA+  SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKV+EGIDF  HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGR IR K DYG+M+FADKR++R DKR KLP WI  HL D++LNL+ D  + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
           LR+MAQP+ +    G  +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745

[Close]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match: A0A6J1DAB3 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Momordica charantia OX=3673 GN=LOC111018482 PE=3 SV=1)

HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 730/758 (96.31%), Postives = 746/758 (98.42%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV  LG RAQILAVGLSSRKNLCVN +
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVHQLGPRAQILAVGLSSRKNLCVNPR 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSTAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           +DTWLSNPALPDDILKEAVPGNIRRAEHF+HVLRRLVQYLE RLDTENV KEGLVNFVG+
Sbjct: 301 TDTWLSNPALPDDILKEAVPGNIRRAEHFVHVLRRLVQYLEGRLDTENVEKEGLVNFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           +GSQAGIDQKTLKFCYDRLHSL++TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 VGSQAGIDQKTLKFCYDRLHSLLLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEGNMNEMLY 758

[Close]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match: A0A1S3BRE4 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis melo OX=3656 GN=LOC103492682 PE=3 SV=1)

HSP 1 Score: 1470.3 bits (3805), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDT+NV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGS+G+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match: A0A0A0K5Q0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis sativus OX=3659 GN=Csa_7G390040 PE=3 SV=1)

HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN  
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASE+RDSVDAGCRKLTASWVRA+AAEN +V +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match: A0A6J1GNB9 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita moschata OX=3662 GN=LOC111456016 PE=3 SV=1)

HSP 1 Score: 1465.7 bits (3793), Expect = 0.0e+00
Identity = 731/758 (96.44%), Postives = 746/758 (98.42%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN  
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match: A0A6J1JQ08 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita maxima OX=3661 GN=LOC111488815 PE=3 SV=1)

HSP 1 Score: 1464.5 bits (3790), Expect = 0.0e+00
Identity = 729/758 (96.17%), Postives = 746/758 (98.42%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN  
Sbjct: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
           SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEG+V FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGIVTFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
           VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758

[Close]
BLAST of Sed0006598 vs. TAIR 10
Match: AT1G03190.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLA+ENRDSVDA CRK TASWVRAL+ EN NV  C+FFE YEKA  NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDTENV KE  V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]
BLAST of Sed0006598 vs. TAIR 10
Match: AT1G03190.2 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0 

Query: 1   MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
           M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY 
Sbjct: 1   MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 61  LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
           LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61  LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
           VLA+ENRDSVDA CRK TASWVRAL+ EN NV  C+FFE YEKA  NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180

Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
           RAFG  +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA  ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240

Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
           NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L  
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300

Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
            D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDTENV KE  V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360

Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
           + SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420

Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
            DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480

Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
           F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540

Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
           SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600

Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
           RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660

Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
           AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720

Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
           LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758

[Close]
BLAST of Sed0006598 vs. TAIR 10
Match: AT1G20720.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.1e-41
Identity = 196/837 (23.42%), Postives = 332/837 (39.67%), Query Frame = 0 

Query: 3   FELEDVTVCFPYDHIYPEQYAYMLELKRALD---AKGHC--LLEMPTGTGKTIALLSLIT 62
           +++  + V FPY   Y  Q A+M  +   LD     GHC  LLE PTGTGK+++LL  + 
Sbjct: 27  YQIGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVL 86

Query: 63  SYA----------------------------------------------LSKPQNPVKLI 122
           ++                                               + K +   K  
Sbjct: 87  AWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKKR 146

Query: 123 YCTRTVHEMEKTLAEL-RLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSKVLASENRDSV 182
               T++   +T +++ +++ +Y  R  G R  +    L+SRK+ C N  VL    +D+V
Sbjct: 147 TKIPTIYYASRTHSQITQVIREY--RKTGYRVPMAV--LASRKHYCTNRHVL---GKDNV 206

Query: 183 DAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDLRAFGTKKGWC 242
           D  CR L         +E  NV         +  G N      V+ ++DL   G     C
Sbjct: 207 DDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNE-----VHDIEDLVKVGKNVRGC 266

Query: 243 PYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVS 302
           PYF +  M + A +V   Y Y+++P + + +  ++ + ++++FDEAHN++++  EA S++
Sbjct: 267 PYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIAREAGSIN 326

Query: 303 VRRQTIEGARRNLNKMR----QDIERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLS 362
           +   T+   +  L +M        +   E   G L +   R  + LA+R       +W  
Sbjct: 327 LEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEG-LISWIGRKKDSLAKRDFQHYFSSWTG 386

Query: 363 NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGNIGSQAG 422
                D  L+E    NI R E F  +L    + +    + E            ++   +G
Sbjct: 387 -----DKALRELEESNITR-ECFPILLECFTKAIRTSKEAE---------MESDMLYLSG 446

Query: 423 IDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPVDERMP 482
           I   TL+  +  L            D  L +Q         GT+   FS           
Sbjct: 447 ISVLTLEELFSSLTYFFSRNGSHILDYQLGLQRSTKRGDPSGTWTHTFS----------- 506

Query: 483 HIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLT 542
                   L C + ++  K + +   SV++TSGTLSP++      +F+  +   F  SL 
Sbjct: 507 --------LWCMNPAVVFKDLADISLSVILTSGTLSPMN------SFSSELGMQFGTSLE 566

Query: 543 RDCICPM-------VLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFF 602
              +           ++ G    P++  +            G+ L E+ + VP G + FF
Sbjct: 567 APHVIDPNMQVWAGAISNGPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFF 626

Query: 603 VSYSYMDGIVNSWNETGILKEIMQHKLVFIE----TQDVVETTL------------ALDN 662
            SY  M+ +   W ET     +   K +F+E     QD  ++ L             +  
Sbjct: 627 PSYKLMEKLCMRWRETEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSIRGKNKIIGR 686

Query: 663 YRKACDCG-----------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKI 722
            R+A   G           +GA F +V RGKV+EGIDF     R VI+ G+PF   L  I
Sbjct: 687 NRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFP-NLHDI 746

Query: 723 LLARLEYLRETFQIKE-----GDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRH 745
            +   +   +T++  +      ++    A R   Q  GR IR + DYG +IF D+RY   
Sbjct: 747 QVGLKKKYNDTYKSSKSLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQ 798

[Close]
BLAST of Sed0006598 vs. TAIR 10
Match: AT1G79950.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 162.9 bits (411), Expect = 9.9e-40
Identity = 175/807 (21.69%), Postives = 330/807 (40.89%), Query Frame = 0 

Query: 3   FELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 62
           + +  + V FP++  Y  Q  YM  +  +L  K H LLE PTGTGKT+ LL    ++   
Sbjct: 49  YSIRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 108

Query: 63  ---------------ALSKPQNPVK------------LIYCTRTVHEMEKTLAELRLLHD 122
                            S    P+             ++Y +RT  ++ + + EL+    
Sbjct: 109 LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELK-RSS 168

Query: 123 YQVRLLGSRAQILAVGLSSRKNLCVNSKVLASENRDSVDAGCRKLTASWVRALAAENSNV 182
           Y+ ++         V L SR+ LCVN +V +   +   +A C+ L          +    
Sbjct: 169 YRPKM---------VVLGSREQLCVNEEVNSLRGKALTNA-CQYL---------CKKRGK 228

Query: 183 ASCEFFEQY-EKAGSNAVLPPGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQY 242
             C  F +  +    N  +      ++DL   G   G CPY++ R + +  +++   Y Y
Sbjct: 229 RQCNHFNRLPDYLKHNPHIGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNY 288

Query: 243 LLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQ-DI 302
           L+       + K     SV++FDEAHN++++C ++ S  +    +        +  Q   
Sbjct: 289 LISNGYRKFL-KVNWTNSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAA 348

Query: 303 ERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLSNPALPDDILKEAVPGNIRRAEHFI 362
            R    +   +  E   +++GL  +              L + I K  +P   +R E F 
Sbjct: 349 ARRDSLNDVSINPENFAILKGLLLK--------------LQELISKVPIP---KRDEGF- 408

Query: 363 HVLRRLVQYLEARLDTENVVKEGLVNFVGNIGSQAGIDQKTLKFCYDRLHSLMMTLEITD 422
               +   Y+   L + N+  E     +G +   A                L    + T 
Sbjct: 409 ---TKPGPYIYEMLKSLNITHETAPKLIGTVEEAAVF--------------LEEEKQRTA 468

Query: 423 TDEFLHIQTICDFATLV-----GTYARGFSIIIEPVDERMPHI----PDPVLQLSCHDAS 482
           T+    ++ I D   L+       +A  + + ++ +++    +        L   C    
Sbjct: 469 TNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLSWWCFSPG 528

Query: 483 LAIKPVFER-FQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSD 542
           + +  + ++   S+++TSGTLSP+D   + L  +  +       ++ + +   V++ G  
Sbjct: 529 ITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPS 588

Query: 543 QLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFVSYSYMDGIVNSW------NE 602
              +++ +  R      +  G  ++     VP+G++ FF SY  MD  +  W      N 
Sbjct: 589 GYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNS 648

Query: 603 TGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDR 662
             + + I + K   IE +D      A+ ++ +        G VFF+V RGKV+EG+DF  
Sbjct: 649 MTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDFAD 708

Query: 663 HYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKE-----------GDFLTFDALRQAA 722
             GR V++ G+P+       +  + E+L E  Q+ +             + + +A R   
Sbjct: 709 GAGRAVVITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVN 768

Query: 723 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR--DAHLNLSTDMALHIARE 747
           Q +GRVIR + DYG +IF D R+ +  ++SK+  WI  +++    +  + +D+A     E
Sbjct: 769 QAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVISDLARFFRTE 798

[Close]
BLAST of Sed0006598 vs. TAIR 10
Match: AT1G79890.1 (RAD3-like DNA-binding helicase protein )

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-36
Identity = 153/697 (21.95%), Postives = 282/697 (40.46%), Query Frame = 0 

Query: 65  QNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSKVLAS 124
           Q   K+ +C+RT  ++ + + ELR        +   + +++ +G  SRKNLC+N  VL  
Sbjct: 180 QGGFKVFFCSRTHSQLSQFVKELR------KTVFAKKLKVVCLG--SRKNLCINEDVLKL 239

Query: 125 ENRDSVDAGCRKLTASWVRALAAE---NSNV------ASCEF----FEQYEKAGSNAVLP 184
            N   ++  C  L    +  ++ +    +NV      ASC        + ++        
Sbjct: 240 GNVTRINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQ 299

Query: 185 PGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVV 244
                ++DL   G +   CPY+ +R M   A++V+  YQ LL       +   + + SVV
Sbjct: 300 QEAMDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVV 359

Query: 245 VFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEG 304
           + DEAHN+ +  +      +    +E    ++      + RF+    G     Y +++  
Sbjct: 360 IIDEAHNLADTLLSMHDAKLTVSQLEDIHCSIESY---LGRFQNL-LGAGNRRYIQIMLI 419

Query: 305 LAQRGNLPI-SDTWLS--NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTEN 364
           L +    P+ SD  LS  N  L  +   ++ P        +  +    +  +        
Sbjct: 420 LTRAFLKPLASDRNLSSVNVGLDTENPSKSKPCGACSMAIYDFLFSLNIDNINLVKLLAY 479

Query: 365 VVKEGLVNFVGNIGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVG 424
           + +  +++ V   G +     +     ++ +  L      +D               L  
Sbjct: 480 IKESNIIHKVSGYGERVAAMLQKDPVAHEEMSKLTSFRAFSDM-----------LVALTN 539

Query: 425 TYARGFSIIIEPVDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPID--- 484
               G  II              +  +    A L    V +   +V++  GTL PI+   
Sbjct: 540 NNGDGRIIISRTSSSTSGQHGGYIKYVMLTGAKL-FSEVVDEAHAVILAGGTLQPIEETR 599

Query: 485 --LYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRL 544
             L+P L + N +   S +  +  + I P+ ++ G            RS +G+++  G L
Sbjct: 600 ERLFPWLPS-NQLQFFSCSHIVPPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLL 659

Query: 545 LLEMVSAVPDGVVCFFVSYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDN 604
           +  +V+ VP+G++ FF S+ Y   +  +W+ +GIL+ I++ K VF E +   E    L +
Sbjct: 660 MSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILRRIVKKKRVFREPRKNTEVEAVLRD 719

Query: 605 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLR-- 664
           Y++A +  RGA+  +V  GKV+EGI+F     R V+M G+P+       LL R++++   
Sbjct: 720 YKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGR 779

Query: 665 -ETFQIKEGDFLTFDA----------------------------LRQAAQCVGRVIRSKA 702
            ++  IK    L  D+                            ++   Q +GR IR + 
Sbjct: 780 ADSDSIKPSVTLVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIRHEK 839

The following BLAST results are available for this feature:
BLAST of Sed0006598 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150277.10.0e+0096.31DNA repair helicase XPD [Momordica charantia][more]
XP_038898338.10.0e+0096.83general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 ... [more]
XP_008451374.10.0e+0096.57PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo][more]
XP_011659313.10.0e+0096.57general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sa... [more]
XP_022953477.10.0e+0096.44DNA repair helicase XPD [Cucurbita moschata][more]
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W4M70.0e+0085.88General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidop... [more]
A6QLJ02.6e-25056.17General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taur... [more]
P180743.7e-24955.90General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sap... [more]
Q604528.2e-24955.63General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetul... [more]
O088111.4e-24855.76General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musc... [more]
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DAB30.0e+0096.31General transcription and DNA repair factor IIH helicase subunit XPD OS=Momordic... [more]
A0A1S3BRE40.0e+0096.57General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ... [more]
A0A0A0K5Q00.0e+0096.57General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ... [more]
A0A6J1GNB90.0e+0096.44General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit... [more]
A0A6J1JQ080.0e+0096.17General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit... [more]
BLAST of Sed0006598 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03190.10.0e+0085.88RAD3-like DNA-binding helicase protein [more]
AT1G03190.20.0e+0085.88RAD3-like DNA-binding helicase protein [more]
AT1G20720.13.1e-4123.42RAD3-like DNA-binding helicase protein [more]
AT1G79950.19.9e-4021.69RAD3-like DNA-binding helicase protein [more]
AT1G79890.13.0e-3621.95RAD3-like DNA-binding helicase protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 256..276
IPR001945RAD3/XPD familyPRINTSPR00852XRODRMPGMNTDcoord: 8..25
score: 66.67
coord: 492..509
score: 54.76
coord: 372..394
score: 52.8
coord: 333..354
score: 42.86
coord: 273..292
score: 62.86
coord: 308..326
score: 70.68
coord: 403..421
score: 74.44
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..631
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..280
e-value: 9.9E-129
score: 443.6
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 542..631
e-value: 1.2E-14
score: 64.7
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 524..626
e-value: 2.2E-21
score: 76.8
IPR010614DEAD2PFAMPF06733DEAD_2coord: 72..255
e-value: 1.0E-51
score: 175.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 501..631
e-value: 5.6E-29
score: 102.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 16..286
e-value: 3.7E-52
score: 179.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 31..623
IPR013020ATP-dependent helicase Rad3/Chl1-likeTIGRFAMTIGR00604TIGR00604coord: 9..631
e-value: 1.4E-202
score: 673.1
IPR010643Helical and beta-bridge domainPFAMPF06777HBBcoord: 270..412
e-value: 2.4E-26
score: 92.6
IPR045028Helicase superfamily 1/2, DinG/Rad3-likePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..631
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 229..238
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..285
score: 38.145443

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006598.1Sed0006598.1mRNA
Sed0006598.2Sed0006598.2mRNA
Sed0006598.3Sed0006598.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000717 nucleotide-excision repair, DNA duplex unwinding
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0045951 positive regulation of mitotic recombination
biological_process GO:0006979 response to oxidative stress
biological_process GO:0009411 response to UV
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0033683 nucleotide-excision repair, DNA incision
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function GO:0004386 helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding