Sed0006485 (gene) Chayote v1

Overview
NameSed0006485
Typegene
OrganismSechium edule (Chayote v1)
Descriptionnuclear pore complex protein NUP205
LocationLG06: 13795220 .. 13802776 (-)
RNA-Seq ExpressionSed0006485
SyntenySed0006485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGCTAGTGCAGTTACTACTAAAATCTAATATTGCAAGCTCTTTAGTCGAGGATTATGCATCCTACCTTGAGTTAAGATCTAAAGATAGTCATGCAATAGAAAACAATAGAGATGATCCTAGTGTTCTTATAGTGCAGGTTTGTGTTAGCCTATTTATGCTCTCAAGTTCGATTTTTTTTAAAATACTTGAATGTCTCCGGCGTTGGGTATTTTCTGCACCAAATCTTGCTCCTTAAATTCTAACTAGCTGATCAAACCATCATTTATGTGCCCATTTTCTGCAGCTTCTTATTGACAACACTCTCTCCTAATGTTACACACTTGCTACTTCAATTTGACCTTGAGACATCCATTGAGCGAACGGTTTTGCAGCCAAAATTTCATTGTAGGTGATTTGTTTTTAAATTTATGACAAGTTCTTAAAATATTCCGTTCACTTTTGCATTGATAAATCACAATGTAGTATATTAGTCACATGATTCTTCCTATGTAGTTGGCTTGAAGGTTATTGTGGAGATTTTGGAAAAGCTTTCAAATCTAAAAAGTCATTTTGTTGCTTTATGAGTTTGATTTTCAGGTTAAATGTTGTGGATTATTATTCTAATTAAGGGAAAGTAAAAATTTCAACATATGATCCCTTTTTTCCATTGTCCATTCACACTCACACATCCCTACTCCGTCATTAGTTTAAAGTGGTTTTCTTGTACAACTTCAGATGGATTTGGATGAAGTTTTGGATGAGAAGTTATTTTGAAGATTTATTTTAAGTAGTTAGAAGTGGAAGTTTTTGTAATAACTTGTTTAGTCACTTGCATTATGGATATGGTAAGAGCTTCTTCTGTTTGGGTCTTGCCATGATAAAATAAGAAATATCGCATTTTTAACAAAAACGAAATTTGTTTAGGTTAAATGACGTGTTTGCTTTTTGAAAATAAAATTAAGTTCTATTTATTTATTGGATAAATTTTTCCGCTCTATTTTTCACCATTCGTACCTTTTTCATGCTTGTAATGGTAGCACTTGGAAACCAACCATACCCATTGCATTAGCTCCCTTCATCATGTTTTTTTTTTTATGAATTACTGCACTTAATCATGCTCATGCTTTGCATTTCATTTTCCTGCATTTTTAAACTTAGTACTTACCATTTTTTACCGGCAAATCTGACTTTATTTTTCTTTGTTCACGAGAGCATGGTTGCTTAAGCTTTTAGTTTTAGCTATTGAGTTGCATGTTGCTAATTTTAGTAGCTCAATCCATCGAAAGGCATGGTAGAGTATGCTTGCACACTTATGTCATGTAGGCACAAATAAGAAATAAAAAATAAATATTTAAATTAATAAATATATGTGTGTTTATATTTATATATTGAGTTAAACAAACCATCTAGGCATATATTAGTGCTTATGATTATGACGCAAATGCAATCGACCTTTAACGTGTAACAAGGTTCAATTTTTGAAGCACTTCCAAGTTTTCTTCAATTACTTTTAAGTATCTATTCCTCAATTTCTCATGTCCAAGCATTGGAGCTGCTTGAAGTCATTCAGTTCAGAACTCCAAATACCTTAAGCTTTGTAACGGCCCAGAAATTTCATCCCGGTCTTCCCGGGAGGGCCAGGGGCATTTTGGTAATTTTGGGTCGGGCCGACAGGGCCGGTTTTGAAATTGAAAATTTCCGGAATAATTATGAGTCAAGTTGAATAGGATCGGGATTTTTGGTGAAGGCATTTGGGCTTGGGAATGAGTAAAAATTAAATGAGGAATTAAATAGCGCGTCGAGTGAGATTCGAACCAGAGACGTGTCGCGTGCTAGGCAAGAGGCGCTGCCAGCCGAGCCACTGGGCGTGTTTGTTAATCTACGTGCGCGATTTGGTATATATGCCGTGCGCAGTGGGATTTTCATATAAAAGCAGAGCTCGCCCGAAGCTTCTTCTTCCTCGCGATTTCTCCTTCGTTTCTCCTTCGACCGACTGGCGATCTCCGGCGATTTCTGCCTTCTCCAGCTCCGAATCGATCGTGGTTGTCTTCCCCAGCTCTGAGGTCGATCCTTTTCCGTGTTGAAGGTAAATTTTCCTTCCTTTCTTCTTCTCTTCTTCGCTCCGAGCCCCTTCTTCCGCTTCGTTTCACGCCATGGTGAAGTGTTTTTCCGGGTGGTTTGTGTGCGCGGCTAGTGTAGGAAGTTCTCCAACGAAGAATCGCTCGTCGAATCCCCGTGGATCGCTCGATTTTGGGTTGTCTCCTTCGCCTCTGTTTCGTGCTCTATTGTTTGCTGCGAGTCGTCGCCGAAGTCTCGCCAAGACACAAATACGCGCGCGCTTTGCGCTCTACATCGCCGCGCGTAGAAGCGACCCAATGCCGTCCCGTGCGCTCGTCGCCGAGCCGTGCCGCCGAGCCGTGCCACCGAGCCGTGTCGCCAAGCCGCGCCCCCCCACAGAAACAGTGTCCTCGCTGCTGAGAGCCGAGCCGCTAAGCCAAGCCAATCCGAGCCGAGCTGCCGAGCGAGCCGAGCCGAGCCGAGTGAGAGCCGAGCCGAATTATTTTATTTTTATTTTATTTTATTTTATTTAGATATTGTGTGTAATTGTGTTGTGCTTGTTAGGTTCCCTGTGAGCTAGTTCGGGTTCGTTCGCACTTTCTAGGTTTCCGTGTATTCGCCCCAGACCAAGGTAAGGATTTCTTACGGGAGTTGTGTGGACCTGCGATATTATATGTGATTGCCGATTGATCGCTTGTTTGTGTTTATTGACATGTGTAGCTAGGTAATCTATTCTCAATTCCCGATTAGCATGATTTTCCCGGTTTAATTCTCATGTTAATCCATGCTAGGTTGCTCCTTTCTAGCATGCTCGTGATCTGCTTTGCTTGCTTCGTAGTATCATGCTAGGCTCGTTGTATTCTTATTGAGCACGTATTGGATTTTATGGAATTGTTTGTCGCTTGCTAGGCGGTGTTAGAATTGCGGTGTAGATAGCATCATCCGGCCTGATGCATAAAGAACCTTGCATCCATGGCGGGGACGTCGAGCAAGTCATTCCGCCCCTCGACCCCGTGAGGGATTAGCTAACCCGAGCGGTAGGCCCCGCAATCTTGGGTGAGGGTGGCGATCGTTAAATGCCCCAACGGTCGGGATGATGACTTGGCATTGCCTCGCCCCGCAAACGGCATGTCCTCGGCATGTTTGGCAAGAGCCCCGATTGCCACTGTTAAGGCAAGGACGACTTCTGGTGTAAGCCTACCACGACCGCCTCCTTGGCCCGTGTGCGGTGGTTCAGCCGACATAGTTTACGTGTCCGTGTCTCACACCCCTATGTCGCGACACACCGATCCAAAGATTTAGTTAGGCGTGGTGACTGGATATGGGCGCTTCCCTCCGCACTCCAACCCCCATAGTTCTGCAGAGCACGCGGTGCATGCTTACGCCATTACAAATACCGATCGAGAGCTCCTCGGGATTGTGAGCGCGTATCTTTCGTCGACAATGAGACAGCCGAGGTAGGGACTTGTTTCTCGTATAGGGCGACTTATATATTGGACCGTGTGGTGATATTATTTCCGGACTAAGACCCTAGTTGGCATCCGAGGCCCAAGTATGGGCTAAGCTATGTGCTCCATTCGTGTTTATATTCATAGCTTGCATACGCTCATCGAGATGACCATGTATATCGTATTGTACCCGGTTGGGGATTCTTATCGAGTAATTCGTTACTCACCCTTATTCTCGTGGTTTTCCACGGTAATCGTGGTGCGCGACAGGATGCTCCAAGGAGGAGCTGTGATCATGGGGCCCGATCTTTCCAACTCGATTTTTGTATTATGACTCTCGTGTGTTTTGTTTTCCCATCGCATGTAGTCGGGCACGAGAGCCCTAGGATGTTTGTAAATATTTGTGGATTCCAAAGATTTTGTATCTAAACAGTTTTGAATGGCTTTTATTAAATCTCCGATCGAGTAAACTTTGGAAATGTATTTATCTTGGAACAGTGCTTGGAAACAGGGGGCGAGTTCCAGGAAATTGTCTAGTTTTTAAAGGAGTTATTTTGAATGTTTTGTTTTAATTGGAATCCGAAATCATGTCTGTTTAAATGTCCTTTACTTTGAATGCATGCATTGGGATAAGGGCCCATTTAGTGCCCCATTCGAGTCGGTCCCTTACAAGCTTCCTCAAATAGTTTCAAATTTAAAGTACTAATTGCTAGAATTTCTAGTAATGTTCAAGTATTCCGATTTCTTTGTCTTTCGTTTTTCATTATTGGTGTCTGACACTATTGTTATTCTTTTTTGTAGGTAAAGGATGTACTTGGAAATCCTTCATCTTCTCAAAAGGGTGGGATCTATTGCTATTTAGCTAGTGATCACCTGATTGACCTTTACTTCCTTTCGTGATAAACTTTGGCGTCGGTAAAGAAAAAATCCAGTTTCTTTTTTTATCAAAAAATGACAGACTTAGTTGGAAAATGAGGTTCCATACTTTTATTTGTGGTTTTGGATTGTGCAAGACATTAGTACTTGAAATATATATTTTATTTAATGCTTATGTGGAAATGTTGAAATTGTAATTTATTATTGAAATTCTGTCCAACAAGATATCAATATGTATATATTGATAGGATGAACGGGATAATTAGATAAATGTGACCAATTCTTTTTATAAAAAATAAAAATAACATGCTTTGACGTTTTATAAGTGTCAACAATAAGAACCAACTTGACATTTGACAAGCGTCAACCTTCTATTTTAATGACATTTACAAACTGTCAACATATGTATATTTACTTGACGTTTTTGTTAATAATTGACATTCACAACAGGTCAACTAAACTCTTGCTTGACGTTTATAAAACGTCAACCAAATCATCACTTGACGCTTATAGAGTATCAACGACTTATAGTCCTGACACTTATAATATGTCAACTATAACTTCAAATGACGTTTTTTCGAACGTCAACTATAGTGACTTTAGTTGACAGTCGATTCGTTGACGCTTTTGAAAGCGTCAACTTGACTAAAGAGTTGACGTCCTGTGCGCGTCAACTTTCTTAATTTTTGTAGTAGTGATATTTGGGATTTGGGGTTTAAAAACCACACTATAAAAGCTTATATTAAAGTTAAGTTGCAATAAATCTTGTCTTGTGAACCTATCTAACCAAGGAATGAACAATTTCAGTTCATTATAATGATTGAGTGTGTAAGTTTTGTTTGGTGGTTTTGTTCTCTAACGAAAGAATGAAAAAATTCATTTCTCTTTATCTGCCCTTCAAATTTGGTATGCGAACTCTTCTTTCTTAAGTTTCACATTACCATTTAAAATGACATTTTCAAATTGATTATTGCAATTTTCTATGATGGTGGCTTTGCTTTCATCTTCAAAAGCCCTAATTTTGATTTTCTTTATTTCTTTTCAATTAATAACTTTGGTTTTTTTTCCACACTTAATAAGGAGAAGAATAAGAACAAGAAATAAAAAATGCAAATCAAATTGATTAACAGACCAAACACTCATCATATACACAAAACTTCACCCAAAAAAAAGTTTAATCAATTTCTACATTTAGCACAAAATGACTTACAAAAAAAAAAAAAAAAAAAAACCAACTTTTCAAATATCCGAGTAAAAGAGATCAAGAAAACACATTTTCTTACCAAGCATCTTAGATTTTTCTTCCCTAGACACATTCACGTGAGGAAATAAGGAAGGGGGAGGATATGAGTTACCTTGTGAACAGAGAGATCTCGAATGAACGAAATAAGACGACGATGACTTTGGGAGAATATGCAATTAATGGCTAAGGGATGCCAAATAAAAAAAATTGTAACCTAAATTTAAACTTTTTAGGGTATTTTAAATGCGCGACCAAATTTTTTCTATGCCGCTTAGTTTATTCTTTTTTCCAATAGCATTTTTTAAAAAAGTTATCCTAAAATGCTATAAAAGGGGATATTTGTTGTAGTGAACGTACCTGACAGCAGAGAATAGAGCAACCTTATTGCAGAGAAGATCATGGAACGAAAGTGGGAGCGAATTTCGGGAAGCCTATATAAGGCGAGGGCTTCCCAAATTCAGGGTCGTCAAACCTTCTATTCTCCTATTTTAGTGCCGAAATTTCTCCCCGTTTCGACCAAATTTTCTTTGCTTTGTAGATTTCAACAGTTGGATCACTTTTGTCGGGCTTATCTTCGCTATTTCTTTTCAAGCTTTTCCTTTGTTCTTAGCTTACCATATTGTAACCAGAGCTTTACCAGAAACTTTAAGTTATACAAGTTTTCAGGCGTTTTCTATTCTTCTATCTTTCTCATTGTCATTTGCAAAAGTTTAACTTTATTTCAAGCATGTTTTTGTTCTTTGATTTGTCTTTGAACATGAGTTCCGCTTGCATGAGTAGCTAAATTTGTTATCGGAGAGTTATGGGGGAGTAAGCGGTTTCGCTTAGGCGAGAGGGGGTAGCGAACTAGAACTATTCATGCATGTTGAATTTACTTAACTTATATAGTGTTGAGAAGCCATATATTTGCCTTTACCCTATTTCGAGAGAAAAGAGTGAGAAAACTTGCATGTATGACATTAGGACTATTAAGTTTAGCTTACTAATCAAAGATTACTTAGAGATAAGGGTTGTCTAATGCCATAAGGTGCTTTTGCAGTAGTTGTGTTCGAGAGAACCAACAAGAGCTCGAGAGAGCCAACATTCGAAACTCGAGAGATGGATTATGTGGTTATTCGATTTAGCTATTTACTTCGCCAAAGCGAAGCCTCTGAAACCTTGAACCCCTCCGATACTTAATCTTGTATTGTTATTAATTCGTTCTTTGTTATTTTTTCATACCACCCACTCATTCACTAAATTGGTTACCATATTGACTCTCACACGAAAACAAATATAAACACAACAAAAAATCCCTGTGGAGAATGACCTATACTTACTGATTAAAACTTGCTACAACTTTGACCGCGTATACTTGTGCGAATTGGAAAGAACAGAGACACATTTCGCTTGTTTGCTCTTCGCTTGGGCAAAGATTGAGATTTGCCACGTCATTACCTTACTTAATTATCCTTAATTGTGGTGTGTTAGTTTTAGCTCCAACAATTGCTTTCTTAAGCGCTACAGCTGAAGTAGAGAGAATTCTCAAATGCAAAGGTCGGGTATTTGCCCTTCAGAATGAACCAGAAGTTGCTAGAGATGGGTTCTGATCCTGAAAGATTTCGGTCTGATTTCTGTTCCTGAAATATCATATCGGCTTCTGACAAACAAGGATGAGTTTATAGTCTTAGCTACAGATGGAGTATGAGAGTGATTTCTTAGTACCATTTGTACTCAAACTAAATTTAATTGGTACTATTTAAAGTTTGATTTGGCACTTTTCAGATTGTGGGATCTGCCCGTGCTCCTTCTGCAGCTCGATCATTGGTCGTGGAGAGGCAAGTTTTCTTCTTCCAACATTGATGATTGCACTGTTGTGTGCCTCTTCCTCGACTCGAACTTGATGGTGTCGGAGACAAGCTTAAAGCCAAGGAAGAGGTTAACTCAGCAATCCGAGCTGGAGTGA

mRNA sequence

ATGGTTGGGCTAGTGCAGTTACTACTAAAATCTAATATTGCAAGCTCTTTAGTCGAGGATTATGCATCCTACCTTGAGTTAAGATCTAAAGATAGTCATGCAATAGAAAACAATAGAGATGATCCTAGTGTTCTTATAGTGCAGGTAAAGGATGTACTTGGAAATCCTTCATCTTCTCAAAAGGGTGGGATCTATTGCTATTTAGCTAGTGATCACCTGATTGACCTTTACTTCCTTTCATTGTGGGATCTGCCCGTGCTCCTTCTGCAGCTCGATCATTGGTCGTGGAGAGGCAAGTTTTCTTCTTCCAACATTGATGATTGCACTGTTGTGTGCCTCTTCCTCGACTCGAACTTGATGGTGTCGGAGACAAGCTTAAAGCCAAGGAAGAGGTTAACTCAGCAATCCGAGCTGGAGTGA

Coding sequence (CDS)

ATGGTTGGGCTAGTGCAGTTACTACTAAAATCTAATATTGCAAGCTCTTTAGTCGAGGATTATGCATCCTACCTTGAGTTAAGATCTAAAGATAGTCATGCAATAGAAAACAATAGAGATGATCCTAGTGTTCTTATAGTGCAGGTAAAGGATGTACTTGGAAATCCTTCATCTTCTCAAAAGGGTGGGATCTATTGCTATTTAGCTAGTGATCACCTGATTGACCTTTACTTCCTTTCATTGTGGGATCTGCCCGTGCTCCTTCTGCAGCTCGATCATTGGTCGTGGAGAGGCAAGTTTTCTTCTTCCAACATTGATGATTGCACTGTTGTGTGCCTCTTCCTCGACTCGAACTTGATGGTGTCGGAGACAAGCTTAAAGCCAAGGAAGAGGTTAACTCAGCAATCCGAGCTGGAGTGA

Protein sequence

MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVKDVLGNPSSSQKGGIYCYLASDHLIDLYFLSLWDLPVLLLQLDHWSWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE
Homology
[Close]
BLAST of Sed0006485 vs. NCBI nr
Match: XP_022143113.1 (nuclear pore complex protein NUP205 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS 60
           MVGLVQLLLKSN ASSLVEDYAS LELRS++SH IEN+ DDP VLI+Q+  D +  P+ S
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEESHIIENSGDDPGVLIMQLLIDNISRPAPS 942

[Close]
BLAST of Sed0006485 vs. NCBI nr
Match: XP_011648678.1 (nuclear pore complex protein NUP205 [Cucumis sativus] >KGN60698.2 hypothetical protein Csa_019311 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEECHTIENSGDDPGVLIMQL 931

[Close]
BLAST of Sed0006485 vs. NCBI nr
Match: TYJ97812.1 (nuclear pore complex protein NUP205 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 776 MVGLVQLLLKSNAASSLVEDYASCLELRSEECHTIENSGDDPGVLIMQL 824

[Close]
BLAST of Sed0006485 vs. NCBI nr
Match: XP_023537592.1 (nuclear pore complex protein NUP205 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEECHVIENSGDDPGVLIMQL 931

[Close]
BLAST of Sed0006485 vs. NCBI nr
Match: XP_022938219.1 (nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEECHVIENSGDDPGVLIMQL 931

[Close]
BLAST of Sed0006485 vs. ExPASy Swiss-Prot
Match: F4KBW6 (Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana OX=3702 GN=NUP205 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS 60
           +VGLV +L+K + A+SL+EDYA+ LE R ++   +EN+ DD  VLI+Q + D +  P+ S
Sbjct: 851 LVGLVPMLIKIDAANSLIEDYAACLEGRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPS 910

[Close]
BLAST of Sed0006485 vs. ExPASy Swiss-Prot
Match: Q6K6N7 (Probable protein phosphatase 2C 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0471500 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 87  LLLQLDHWSWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSEL 139
           LL++  H +WR +F +S IDDC VVCLFLD++  +SETS    + +T   E+
Sbjct: 409 LLVESAHRAWRARFPTSKIDDCAVVCLFLDTD-ELSETSSSMARDMTNAVEV 459

[Close]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match: A0A6J1CPX3 (nuclear pore complex protein NUP205 OS=Momordica charantia OX=3673 GN=LOC111013061 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQVK-DVLGNPSSS 60
           MVGLVQLLLKSN ASSLVEDYAS LELRS++SH IEN+ DDP VLI+Q+  D +  P+ S
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEESHIIENSGDDPGVLIMQLLIDNISRPAPS 942

[Close]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match: A0A5A7V0A5 (Nuclear pore complex protein NUP205 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001670 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 883 MVGLVQLLLKSNAASSLVEDYASCLELRSEECHTIENSGDDPGVLIMQL 931

[Close]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match: A0A5D3BDG6 (Nuclear pore complex protein NUP205 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00220 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 776 MVGLVQLLLKSNAASSLVEDYASCLELRSEECHTIENSGDDPGVLIMQL 824

[Close]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match: A0A0A0LI17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006200 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 882 MVGLVQLLLKSNTASSLVEDYASCLELRSEECHTIENSGDDPGVLIMQL 930

[Close]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match: A0A6J1FDF5 (nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444365 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQV 50
           MVGLVQLLLKSN ASSLVEDYAS LELRS++ H IEN+ DDP VLI+Q+
Sbjct: 883 MVGLVQLLLKSNTASSLVEDYASCLELRSEECHVIENSGDDPGVLIMQL 931

[Close]
BLAST of Sed0006485 vs. TAIR 10
Match: AT5G51200.1 (Protein of unknown function (DUF3414) )

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-06
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 1   MVGLVQLLLKSNIASSLVEDYASYLELRSKDSHAIENNRDDPSVLIVQ-VKDVLGNPSSS 60
           +VGLV +L+K + A+SL+EDYA+ LE R ++   +EN+ DD  VLI+Q + D +  P+ S
Sbjct: 851 LVGLVPMLIKIDAANSLIEDYAACLEGRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPS 910

[Close]
BLAST of Sed0006485 vs. TAIR 10
Match: AT1G79630.2 (Protein phosphatase 2C family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 95  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE 140
           SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Sbjct: 269 SWRIKYPTSKNDDCTVVCLFLQDSSVAMEVSTNVKKDSPKEESIE 313

[Close]
BLAST of Sed0006485 vs. TAIR 10
Match: AT1G79630.1 (Protein phosphatase 2C family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 95  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE 140
           SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Sbjct: 379 SWRIKYPTSKNDDCTVVCLFLQDSSVAMEVSTNVKKDSPKEESIE 423

[Close]
BLAST of Sed0006485 vs. TAIR 10
Match: AT1G79630.3 (Protein phosphatase 2C family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 95  SWRGKFSSSNIDDCTVVCLFLDSNLMVSETSLKPRKRLTQQSELE 140
           SWR K+ +S  DDCTVVCLFL  + +  E S   +K   ++  +E
Sbjct: 296 SWRIKYPTSKNDDCTVVCLFLQDSSVAMEVSTNVKKDSPKEESIE 340

[Close]
BLAST of Sed0006485 vs. TAIR 10
Match: AT5G36250.1 (Protein phosphatase 2C family protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.6e-04
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 0 

Query: 95  SWRGKFSSSNIDDCTVVCLFLDS 118
           +WR KF +S +DDC VVCLFLDS
Sbjct: 364 NWRWKFPTSKVDDCAVVCLFLDS 386

The following BLAST results are available for this feature:
BLAST of Sed0006485 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143113.15.3e-1070.00nuclear pore complex protein NUP205 [Momordica charantia][more]
XP_011648678.13.5e-0977.55nuclear pore complex protein NUP205 [Cucumis sativus] >KGN60698.2 hypothetical p... [more]
TYJ97812.13.5e-0977.55nuclear pore complex protein NUP205 [Cucumis melo var. makuwa][more]
XP_023537592.13.5e-0977.55nuclear pore complex protein NUP205 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022938219.13.5e-0977.55nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata][more]
BLAST of Sed0006485 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KBW65.4e-0545.00Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana OX=3702 GN=NUP205 PE... [more]
Q6K6N75.4e-0546.15Probable protein phosphatase 2C 14 OS=Oryza sativa subsp. japonica OX=39947 GN=O... [more]
BLAST of Sed0006485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CPX32.6e-1070.00nuclear pore complex protein NUP205 OS=Momordica charantia OX=3673 GN=LOC1110130... [more]
A0A5A7V0A51.7e-0977.55Nuclear pore complex protein NUP205 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BDG61.7e-0977.55Nuclear pore complex protein NUP205 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0LI171.7e-0977.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006200 PE=3 SV=1[more]
A0A6J1FDF51.7e-0977.55nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita moschata OX=3662 GN=... [more]
BLAST of Sed0006485 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51200.13.8e-0645.00Protein of unknown function (DUF3414) [more]
AT1G79630.22.7e-0442.22Protein phosphatase 2C family protein [more]
AT1G79630.12.7e-0442.22Protein phosphatase 2C family protein [more]
AT1G79630.32.7e-0442.22Protein phosphatase 2C family protein [more]
AT5G36250.13.6e-0469.57Protein phosphatase 2C family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006485.1Sed0006485.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005643 nuclear pore