Sed0006476 (gene) Chayote v1

Overview


Name	Sed0006476
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG13: 25843550 .. 25844765 (-)
RNA-Seq Expression	Sed0006476
Synteny	Sed0006476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATGATCTAAAATTTATTAAATTGAATTAAGATTAAAAAAGTGGGTAAAAATTAATCCTCGGAATTCAGAAATTCTCTTGGGTCTCTACCCTATTTTTCATAAAATTTAACTGGAAATATTTCAAAGATGAGGATTAAAATGAGTGGTAGGAGTAGGATAGTAAACCAATCCCTTCCTATTCCTATCTCGCTTAGTGGACATCTCTAATACCATCAATTTTGTAAGTTCATCAATTTCTTAAGACGTTGACAATGATGGCTTAAAGTCAAATAATAATCCACTCATCACGTTTATATTTTAATCCTAATTGCTCAACTCCCATCATTTTTCCATTTGAAATTATGTACTAAATTGGAATTATACTTTACAATTGGCAAAGCCTGTCAGTTCTGACTATTTCCATTTCAAACAAACACAAAGTATAATTATTTATTTATTTATTTTCAGAATCTTTCGGCGGCTCTTTACATTGAAACCAAATCAATCTCTATTCCCTTTTAAGCTGCCTTCGCCAAATGGCAAATGATATCTTCTATTTCTTTTTTCTCTCTCAACGTTTGGTACATTAATTCATTGACCCTTTTGATTTTTTGTTCTAATTTTCATAATTTTGGATTCAAATCAACAAATGGGAATCAAATGGCGAAATTCACGGAGCCAAAGCATCAGGTTGGGTAAGAGCTGCGATTCAAATGAACGAGAAAGCAAAGGCTTTGGATGGCAGATTTTGTGGCAAAAAATCAGGAAAGAGAAAAAGAAAATGTTCTGTTCTTCTTCTGTTGAATTGCGTTCTTACAATTCAAATGCTTATGAGTTGAATTTTGATCAAGGATTCAGCTGCTCCTCTGAGCTTGATGATCTCTCCAGATCTTTCTCCGCTCGTTTTGCTGATCCGTCGATCGTTTCGCGGAGCTTGAGATTGTTGGATTGAAGTTCTTGTAAATTTTCAATGGCGTTTCTTGATGGGGTTTCTGTAATTTTTGTGACCCTTTTTCGAGATTTCAATGCCTTGTTTGTGCTTTTTTTTTAGTACACGAAGATTCAAATTTGTAATTTCTTGATCAAAGATATATGTTAATTTATACAGACAATGATCTGTTTGTGCTTTGGAGTTTTGGTTTAATTCTACAGTACTGTGATTATTATGTGTTTGTTTTGTTGGGACTGTTTTTGTATCAGTTTATATGTTTTTCTTTCAAAGGAAGAAAAGAA

mRNA sequence

AAAAATGATCTAAAATTTATTAAATTGAATTAAGATTAAAAAAGTGGGTAAAAATTAATCCTCGGAATTCAGAAATTCTCTTGGGTCTCTACCCTATTTTTCATAAAATTTAACTGGAAATATTTCAAAGATGAGGATTAAAATGAGTGGTAGGAGTAGGATAGTAAACCAATCCCTTCCTATTCCTATCTCGCTTAGTGGACATCTCTAATACCATCAATTTTGTAAGTTCATCAATTTCTTAAGACGTTGACAATGATGGCTTAAAGTCAAATAATAATCCACTCATCACGTTTATATTTTAATCCTAATTGCTCAACTCCCATCATTTTTCCATTTGAAATTATGTACTAAATTGGAATTATACTTTACAATTGGCAAAGCCTGTCAGTTCTGACTATTTCCATTTCAAACAAACACAAAGTATAATTATTTATTTATTTATTTTCAGAATCTTTCGGCGGCTCTTTACATTGAAACCAAATCAATCTCTATTCCCTTTTAAGCTGCCTTCGCCAAATGGCAAATGATATCTTCTATTTCTTTTTTCTCTCTCAACGTTTGGTACATTAATTCATTGACCCTTTTGATTTTTTGTTCTAATTTTCATAATTTTGGATTCAAATCAACAAATGGGAATCAAATGGCGAAATTCACGGAGCCAAAGCATCAGGTTGGGTAAGAGCTGCGATTCAAATGAACGAGAAAGCAAAGGCTTTGGATGGCAGATTTTGTGGCAAAAAATCAGGAAAGAGAAAAAGAAAATGTTCTGTTCTTCTTCTGTTGAATTGCGTTCTTACAATTCAAATGCTTATGAGTTGAATTTTGATCAAGGATTCAGCTGCTCCTCTGAGCTTGATGATCTCTCCAGATCTTTCTCCGCTCGTTTTGCTGATCCGTCGATCGTTTCGCGGAGCTTGAGATTGTTGGATTGAAGTTCTTGTAAATTTTCAATGGCGTTTCTTGATGGGGTTTCTGTAATTTTTGTGACCCTTTTTCGAGATTTCAATGCCTTGTTTGTGCTTTTTTTTTAGTACACGAAGATTCAAATTTGTAATTTCTTGATCAAAGATATATGTTAATTTATACAGACAATGATCTGTTTGTGCTTTGGAGTTTTGGTTTAATTCTACAGTACTGTGATTATTATGTGTTTGTTTTGTTGGGACTGTTTTTGTATCAGTTTATATGTTTTTCTTTCAAAGGAAGAAAAGAA

Coding sequence (CDS)

ATGGGAATCAAATGGCGAAATTCACGGAGCCAAAGCATCAGGTTGGGTAAGAGCTGCGATTCAAATGAACGAGAAAGCAAAGGCTTTGGATGGCAGATTTTGTGGCAAAAAATCAGGAAAGAGAAAAAGAAAATGTTCTGTTCTTCTTCTGTTGAATTGCGTTCTTACAATTCAAATGCTTATGAGTTGAATTTTGATCAAGGATTCAGCTGCTCCTCTGAGCTTGATGATCTCTCCAGATCTTTCTCCGCTCGTTTTGCTGATCCGTCGATCGTTTCGCGGAGCTTGAGATTGTTGGATTGA

Protein sequence

MGIKWRNSRSQSIRLGKSCDSNERESKGFGWQILWQKIRKEKKKMFCSSSVELRSYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD

Homology

[Close]

BLAST of Sed0006476 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 5.7e-30
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1    MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNS 60
            MG+KWRNSRSQSIRLG+SC  SNE+ESK  GWQILW+K++KEK+KMF  SSVELR SYN 
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
            NAY LNFD+  +  SE D+LSRSFSARFADPSIVSR+LRLLD
Sbjct: 1090 NAYHLNFDEE-NWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of Sed0006476 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYN 60
           MGIKWRNSRSQSIRLG+SC  SNE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  SNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
            NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS RLLD
Sbjct: 61  PNAYRLNFEQE-NWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Sed0006476 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGKSCDS-NERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYN 60
           MGIKWRNSRSQSIRLG+SC S NE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  SNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
            NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS RLLD
Sbjct: 61  PNAYRLNFEQE-NWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Sed0006476 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 9.1e-28
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYN 60
           MGIKWRNSRSQSIRLG+SC  SNE+ESK   GWQILWQK +KEK+++F  SSVELR SYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  SNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
            NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS RLLD
Sbjct: 61  PNAYRLNFEQE-NWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Sed0006476 vs. NCBI nr
Match: KAF3446462.1 (hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis])

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-12
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGKSC--DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SY 60
           MGIK W  S SQSIRLG++    +N+RE    GW+ +W+KI+++K K   SS V L+ SY
Sbjct: 1   MGIKEWYKSGSQSIRLGQNYMQSNNDREQIQDGWRKVWRKIKRDKNKKVFSSPVTLQASY 60

Query: 61  NSNAYELNFDQGFSCSSELDDLSRSFSARFADPS-IVSRSLRLLD 101
           + N Y  NFDQG    +E D+LSRSFSARFADP+ I   +  LLD
Sbjct: 61  DPNTYSKNFDQGM-VWTEPDNLSRSFSARFADPNKIFPTTFSLLD 104

[Close]

BLAST of Sed0006476 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.8e-30
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGKSC-DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELR-SYNS 60
           MG+KWRNSRSQSIRLG+SC  SNE+ESK  GWQILW+K++KEK+KMF  SSVELR SYN 
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60

Query: 61  NAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
           NAY LNFD+  +  SE D+LSRSFSARFADPSIVSR+LRLLD
Sbjct: 61  NAYHLNFDEE-NWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]

BLAST of Sed0006476 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGKSC-DSNERESKG-FGWQILWQKIRKEKKKMFCSSSVELR-SYN 60
           MGIKWRNSRSQSIRLG+SC  SNE+ESK  FGWQILWQK +KEK+++F  SSVELR SYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  SNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLRLLD 101
            NAY LNF+Q  +  S+ DDL RSFSARFADPSIVSRS RLLD
Sbjct: 61  PNAYRLNFEQE-NWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Sed0006476 vs. ExPASy TrEMBL
Match: A0A5N5I1S5 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034369 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.5e-12
Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGKSCD--SNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELR 60
           MGI+ WRNSRSQSIRLG + D  SN  +S+  GWQ  W++ + E+KK+F SS+V      
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQP-GWQKFWKRFKIERKKIFGSSTVMPQAQA 60

Query: 61  SYNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR-LLD 101
           SY+ + Y  NFDQG     E D+L RSFSARFADPS V    R LLD
Sbjct: 61  SYDPDTYSKNFDQGTQW-MEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of Sed0006476 vs. ExPASy TrEMBL
Match: A0A251RD41 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGKS-CDSNERESKGFGWQILWQKIRKEKKKMFCSSSV---ELRS 60
           MGIK W NSRSQS+RLG+    SN  +    GWQ  W+K + +KKK   SSS    +  S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR-LLD 101
           Y+   Y  NFD+G   S E D+LSRSFSARFADPS++  + R LLD
Sbjct: 61  YDPKTYSKNFDRGMG-SMEPDNLSRSFSARFADPSMILHNNRNLLD 105

[Close]

BLAST of Sed0006476 vs. ExPASy TrEMBL
Match: A0A498J7U7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020892 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGKSCDSNERESKGF-GWQILWQKIRKEKKKMFCSSSVELR---S 60
           MGI+ WRNSRSQSIRLG + D     +K   GWQ  W++ + ++KK F SS+V  +   S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSHTGWQKFWKRFKIQRKKNFGSSTVTPQAQAS 60

Query: 61  YNSNAYELNFDQGFSCSSELDDLSRSFSARFADPSIVSRSLR-LLD 101
           Y+ + Y  NFDQG     E D+L RSFSARFADPS V    R LLD
Sbjct: 61  YDPDTYSKNFDQGTGW-MEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of Sed0006476 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 14  RLGKSC----DSNERESKGFGWQILWQKIRKEKKKMFCSSSVELRSYNSNAYELNFDQ-- 73
           R  KSC        RE     W++L  K++    +   +SS ++ +Y    Y LNFDQ  
Sbjct: 30  RYSKSCREQKQHQRRERLLPKWKVLLMKLKLLPSR---ASSTKVVAYEPCDYSLNFDQGP 89

Query: 74  GFSCSSELDDLSRSFSARFADPSIVSRSLRLL 100
           G+    E ++LSRSFS RFADP+ +  +  LL
Sbjct: 90  GWHDHDEPENLSRSFSCRFADPTRIRETRFLL 118

The following BLAST results are available for this feature:

BLAST of Sed0006476 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60340.2	5.7e-30	75.49	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
XP_022936244.1	1.8e-28	74.76	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	2.4e-28	74.76	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023536137.1	9.1e-28	73.79	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
KAF3446462.1	5.4e-12	51.43	hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]	[more]

BLAST of Sed0006476 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH9	2.8e-30	75.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1	[more]
A0A6J1F7R9	8.9e-29	74.76	uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A5N5I1S5	7.5e-12	53.27	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]
A0A251RD41	9.9e-12	50.94	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1	[more]
A0A498J7U7	1.7e-11	50.94	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020892 PE=4 SV=1	[more]

BLAST of Sed0006476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	2.6e-04	35.87	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 7..94
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 7..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006476.1	Sed0006476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity